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The map label for this gene is exbD3 [H]

Identifier: 119896904

GI number: 119896904

Start: 642997

End: 643413

Strand: Reverse

Name: exbD3 [H]

Synonym: azo0613

Alternate gene names: 119896904

Gene position: 643413-642997 (Counterclockwise)

Preceding gene: 119896905

Following gene: 119896903

Centisome position: 14.7

GC content: 65.95

Gene sequence:

>417_bases
ATGGCTTTCGGCGGTTTCCACCAGGGCGGCGAGCGCCAGCCGACCAGCGACATCAATATGGTGCCGCTGATCGACGTGAT
GCTGGTGCTGCTGATCGTGTTCATGATCACCGCGCCGCTGCTCACCCACTCGGTCAAGATCGACCTGCCCAAGGCGGCCA
GCCAGCCCAACGTCGAGAAGCCGGAAACGGTCACGCTCGCGCTGGACGGCGACGGCAAGCTGTTCTGGAACAACGAGCCG
CTGCCCGACGACCAGTTGGCGACCCGGCTGACGGAGGCCGCCGGCCGCACGCCGCAACCGGAACTGCACCTGCGCGCGGA
CCAGAACACGCGTTACCAGAAGCTCGCCGAAGTCATGTCCGAGGCGCGCGAGGCCGGCATCGAGAAGATGGGTTTCATCA
CCGTCCCCGAACGCTGA

Upstream 100 bases:

>100_bases
GGTTCTCCACGGGCGCCCGCATCGCGCCGCTGCCGGGTCAGGGCGCTGAAACTGCCACCAAGGCCGGCGCCACCCGCCTG
GCCGCCGCGGGAGCCGCGTA

Downstream 100 bases:

>100_bases
ACCCCGGCTGCTCCCGGCTGCTTTCGCTCCGCCGACGGCGCACCCCGCAGATCGCGGTGTGCGCCGTTTTTCTTGCCGGC
GCCGGCCGCGCCGCCACGCC

Product: biopolymer transport protein ExbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MAFGGFHQGGERQPTSDINMVPLIDVMLVLLIVFMITAPLLTHSVKIDLPKAASQPNVEKPETVTLALDGDGKLFWNNEP
LPDDQLATRLTEAAGRTPQPELHLRADQNTRYQKLAEVMSEAREAGIEKMGFITVPER

Sequences:

>Translated_138_residues
MAFGGFHQGGERQPTSDINMVPLIDVMLVLLIVFMITAPLLTHSVKIDLPKAASQPNVEKPETVTLALDGDGKLFWNNEP
LPDDQLATRLTEAAGRTPQPELHLRADQNTRYQKLAEVMSEAREAGIEKMGFITVPER
>Mature_137_residues
AFGGFHQGGERQPTSDINMVPLIDVMLVLLIVFMITAPLLTHSVKIDLPKAASQPNVEKPETVTLALDGDGKLFWNNEPL
PDDQLATRLTEAAGRTPQPELHLRADQNTRYQKLAEVMSEAREAGIEKMGFITVPER

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=119, Percent_Identity=41.1764705882353, Blast_Score=91, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15262; Mature: 15131

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGGFHQGGERQPTSDINMVPLIDVMLVLLIVFMITAPLLTHSVKIDLPKAASQPNVEK
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCC
PETVTLALDGDGKLFWNNEPLPDDQLATRLTEAAGRTPQPELHLRADQNTRYQKLAEVMS
CCEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHH
EAREAGIEKMGFITVPER
HHHHCCHHHCCCEECCCC
>Mature Secondary Structure 
AFGGFHQGGERQPTSDINMVPLIDVMLVLLIVFMITAPLLTHSVKIDLPKAASQPNVEK
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCC
PETVTLALDGDGKLFWNNEPLPDDQLATRLTEAAGRTPQPELHLRADQNTRYQKLAEVMS
CCEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHH
EAREAGIEKMGFITVPER
HHHHCCHHHCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]