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The map label for this gene is araJ [H]

Identifier: 119896872

GI number: 119896872

Start: 612146

End: 613330

Strand: Reverse

Name: araJ [H]

Synonym: azo0581

Alternate gene names: 119896872

Gene position: 613330-612146 (Counterclockwise)

Preceding gene: 119896873

Following gene: 119896868

Centisome position: 14.02

GC content: 72.83

Gene sequence:

>1185_bases
ATGCCGCTTCCGCTCCTCGCCCTCGCCATCGCCTCCTTCGGCATCGGCACCACCGAATTCGTCATCATGGGGCTGCTGCC
CGAGGTCGCCCGCGACCTCGGCGTCGACATCCCGCGCGCCGGCATGCTGGTGTCCGGCTACGCGATGGGGGTGGTGATCG
GCGCCCCCATCCTCGCCGTGGTGATCTCGCGCATGCAACGCCGGCGCGCGCTGCTCGGCCTGATCGGCATGTTCATCGCC
GGCAACCTGCTGTGCGCCTTGGCGCCGGACTACGCCGCGCTGATGGCGGCGCGCATCGCCACCGCGTTCTGCCACGGTGC
CTTCTTCGGCCTCGGCGCGGTGGTCGCCGCCGGGCTGGTCGCGCCCGAACGTCGCGCCCAGGCGATCGCGCTGATGTTCA
CCGGGCTGACGCTTGCGAACGTGCTCGGCGTGCCGCTCGGCACCTTGCTCGGCCAGCACGCGGGCTGGCGCGCCACCTTC
TGGGCGGTGGTGGCGATCGGCGTCGCCGCGGCGCTGACGCTGCACCGCTGGCTGCCGCACGACCTCGGCGCCGGCAGCAG
CCGCGGCCTGCTCAACGAGGTGCGCGCACTGCGCCGCACGCAGGTGCTGCTGGCGATGCTGATCAGCGTGCTGTCATCGG
CCAGCCTGTTCAGCGTGTTTACCTATATCGCGCCGATGCTGCTGGAAGTGACCGGCATCTCGCCGCGCGGGGTGACGCTG
GTGCTGCTGCTGTTCGGCGCCGGCCTCACGCTCGGCAACCTGCTCGGCGGGCGGCTGGCGGACTGGCGGCTGATGCCGGC
GGTGATCGGCATCTTCGTCGCGGTGATCGCGGTGCTGGCGCTGCTGCCCGCGGCGCTGCCGGTGCCGCTCGGCGCGGTGA
CGGTGGTGTTCCTGTGGGGCGTCGCCGCCTTCGCGCTGATCTCGCCGCTGCAGATGCGGGTGGTGAACGAGGCGGCCGGC
GCGCCCAATCTGGCCTCCACGGTCAACCAGGGCGCGTTCAACCTCGGCAACGCCATCGGCGCCTGGGTGGGCGGCGTGGC
CATACGGCAGGGGGTCGGCTACGACGGCATCCCCTGGGTGGGGGTGGCGCTAGCCATCCTGGCGCTGGCGTTCAGCATCG
GGGCCCACCGCCTGGAGGCGCGCTCCCTCGCCGCCGCTCGACCGGCAACCGAGGGCGGCCGCTGA

Upstream 100 bases:

>100_bases
GCGGCATCAGCATATTGAAACCCGCCCCGGCGCCCGCAGCCGCCGCCGGGGCGTAAGATGCTGCAACGCACCATCCGAGC
ACCGCAAACCCTTCTGCCCC

Downstream 100 bases:

>100_bases
CCGCTGCTCAGGTGCGGAAGCGGCCGACGGTGGCACCGACCGTCGCCGCCAGTTCGTCCAGCCGGCGCGCGGCGTCGGCC
GCCTCGGCAGAGGCGAGGCG

Product: putative transmembrane efflux protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MPLPLLALAIASFGIGTTEFVIMGLLPEVARDLGVDIPRAGMLVSGYAMGVVIGAPILAVVISRMQRRRALLGLIGMFIA
GNLLCALAPDYAALMAARIATAFCHGAFFGLGAVVAAGLVAPERRAQAIALMFTGLTLANVLGVPLGTLLGQHAGWRATF
WAVVAIGVAAALTLHRWLPHDLGAGSSRGLLNEVRALRRTQVLLAMLISVLSSASLFSVFTYIAPMLLEVTGISPRGVTL
VLLLFGAGLTLGNLLGGRLADWRLMPAVIGIFVAVIAVLALLPAALPVPLGAVTVVFLWGVAAFALISPLQMRVVNEAAG
APNLASTVNQGAFNLGNAIGAWVGGVAIRQGVGYDGIPWVGVALAILALAFSIGAHRLEARSLAAARPATEGGR

Sequences:

>Translated_394_residues
MPLPLLALAIASFGIGTTEFVIMGLLPEVARDLGVDIPRAGMLVSGYAMGVVIGAPILAVVISRMQRRRALLGLIGMFIA
GNLLCALAPDYAALMAARIATAFCHGAFFGLGAVVAAGLVAPERRAQAIALMFTGLTLANVLGVPLGTLLGQHAGWRATF
WAVVAIGVAAALTLHRWLPHDLGAGSSRGLLNEVRALRRTQVLLAMLISVLSSASLFSVFTYIAPMLLEVTGISPRGVTL
VLLLFGAGLTLGNLLGGRLADWRLMPAVIGIFVAVIAVLALLPAALPVPLGAVTVVFLWGVAAFALISPLQMRVVNEAAG
APNLASTVNQGAFNLGNAIGAWVGGVAIRQGVGYDGIPWVGVALAILALAFSIGAHRLEARSLAAARPATEGGR
>Mature_393_residues
PLPLLALAIASFGIGTTEFVIMGLLPEVARDLGVDIPRAGMLVSGYAMGVVIGAPILAVVISRMQRRRALLGLIGMFIAG
NLLCALAPDYAALMAARIATAFCHGAFFGLGAVVAAGLVAPERRAQAIALMFTGLTLANVLGVPLGTLLGQHAGWRATFW
AVVAIGVAAALTLHRWLPHDLGAGSSRGLLNEVRALRRTQVLLAMLISVLSSASLFSVFTYIAPMLLEVTGISPRGVTLV
LLLFGAGLTLGNLLGGRLADWRLMPAVIGIFVAVIAVLALLPAALPVPLGAVTVVFLWGVAAFALISPLQMRVVNEAAGA
PNLASTVNQGAFNLGNAIGAWVGGVAIRQGVGYDGIPWVGVALAILALAFSIGAHRLEARSLAAARPATEGGR

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=384, Percent_Identity=46.3541666666667, Blast_Score=293, Evalue=1e-80,
Organism=Escherichia coli, GI1786595, Length=372, Percent_Identity=36.0215053763441, Blast_Score=221, Evalue=7e-59,
Organism=Escherichia coli, GI1787808, Length=381, Percent_Identity=30.9711286089239, Blast_Score=126, Evalue=3e-30,
Organism=Escherichia coli, GI145693198, Length=337, Percent_Identity=28.7833827893175, Blast_Score=98, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40470; Mature: 40339

Theoretical pI: Translated: 11.67; Mature: 11.67

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLPLLALAIASFGIGTTEFVIMGLLPEVARDLGVDIPRAGMLVSGYAMGVVIGAPILAV
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
VISRMQRRRALLGLIGMFIAGNLLCALAPDYAALMAARIATAFCHGAFFGLGAVVAAGLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
APERRAQAIALMFTGLTLANVLGVPLGTLLGQHAGWRATFWAVVAIGVAAALTLHRWLPH
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH
DLGAGSSRGLLNEVRALRRTQVLLAMLISVLSSASLFSVFTYIAPMLLEVTGISPRGVTL
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
VLLLFGAGLTLGNLLGGRLADWRLMPAVIGIFVAVIAVLALLPAALPVPLGAVTVVFLWG
HHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VAAFALISPLQMRVVNEAAGAPNLASTVNQGAFNLGNAIGAWVGGVAIRQGVGYDGIPWV
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
GVALAILALAFSIGAHRLEARSLAAARPATEGGR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PLPLLALAIASFGIGTTEFVIMGLLPEVARDLGVDIPRAGMLVSGYAMGVVIGAPILAV
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
VISRMQRRRALLGLIGMFIAGNLLCALAPDYAALMAARIATAFCHGAFFGLGAVVAAGLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
APERRAQAIALMFTGLTLANVLGVPLGTLLGQHAGWRATFWAVVAIGVAAALTLHRWLPH
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH
DLGAGSSRGLLNEVRALRRTQVLLAMLISVLSSASLFSVFTYIAPMLLEVTGISPRGVTL
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
VLLLFGAGLTLGNLLGGRLADWRLMPAVIGIFVAVIAVLALLPAALPVPLGAVTVVFLWG
HHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VAAFALISPLQMRVVNEAAGAPNLASTVNQGAFNLGNAIGAWVGGVAIRQGVGYDGIPWV
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
GVALAILALAFSIGAHRLEARSLAAARPATEGGR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]