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The map label for this gene is rnfD1 [H]

Identifier: 119896805

GI number: 119896805

Start: 548939

End: 549994

Strand: Reverse

Name: rnfD1 [H]

Synonym: azo0514

Alternate gene names: 119896805

Gene position: 549994-548939 (Counterclockwise)

Preceding gene: 119896806

Following gene: 119896804

Centisome position: 12.57

GC content: 70.17

Gene sequence:

>1056_bases
ATGAACGCGATTTCCTCCCCCCACGCCCACGGCGCGCGCAAGGTCGGCCGGGTCATGACGCTGGTGATGCTGGCGCTGGT
GCCCGCCACGCTGGCCGGCTTCTGGCGCTTCGGCTGGCCCGCCGTCTACCTGTGGCTGGTCACGCTGCTCTCCTGTCTGC
TGGCCGAAGCCTTCTCGACCCGCATCCGCGGCATCGACACCCGGCGCGCACTGTTCGACGGCTCCGCGGTGCTCACCGGC
TGGCTGCTCGCGCTGTCGCTGCCGCCGTGGGCGCCGTGGTGGATCGGCGCGCTGGGCGGTGCGTTCGCGATCATCGTCAC
CAAGCACCTGTTCGGCGGCCTCGGCCAGAACCTGTTCAACCCGGCGATGGCCGCCCGCGTGATGCTGCTGATCTCGTTTC
CGGTGGAAATGACGCAGTGGCTGCTGCCCACGCCGGAGACGCTGCCGGGCGCGATCGAGGCGCTATCGATCACCTTCGGT
GCCGGGGTGCCCGACGCGATGAGCAGCGCCTCGCTGCTCGGCCACGTCAAGAGCGAGGCCACCAAGGGCATCCTGCTCGG
CCAGTCGCTCACCGGCCACTACTCGGCCGCCGCGTTCGGCCTCGGCGACCGCCAGGGCAGCCTGGGCGAAACCAGCGCCT
TGCTGCTGCTCGCCGGCGGCGTCTTCCTGATCTTCCAGCGCATCATCACCGCCCGCATCCCGCTCGCCTTCCTGGCCGGC
GTCGCAGCGCCTGCGGCGCTCGCCAGCGCGATCGCGCCGGACCTGTACCTCGGCCCGCTGACCCATCTGCTGTCGGGCGG
CGTGATGCTCGCGGCCTTCTTCATCGCCACCGACTACGTCACCTCGCCGAGCACGCCGCTCGGACAGTGGATCTTCGGTA
TCGGCTGCGGACTGCTCACCTGGATCATCCGCACCTGGGGTGCCTACCCCGAAGGCATCGCGTTCGCGGTGATGCTGATG
AATGCCACCGCGCCGCTGATCGACCAATACACCCGGCCGCGCATCTTCGGCCGCAGCCGCGACGGTCGCGCGCTGAATCC
CGCCGAATCCCGCTGA

Upstream 100 bases:

>100_bases
GCCGCAAGGCCGAACGTGAAAAGGCCAAGGCCGAAGCCGCCGCCAAGGCCGCTGCCAAGAAGGCCGCCGCACCCGCACCC
GCCAGCGAAGAGAGCCCAGC

Downstream 100 bases:

>100_bases
CATCAAGGCGCGCACCATGGACATCGCCAAGCAGTTCGACACCCTCTGGTACCAGGGCGCCTCGCTCGCCGCGGTCGCCC
TGATCACCGGCGCCGCGCTT

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: Nitrogen fixation protein rnfD [H]

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MNAISSPHAHGARKVGRVMTLVMLALVPATLAGFWRFGWPAVYLWLVTLLSCLLAEAFSTRIRGIDTRRALFDGSAVLTG
WLLALSLPPWAPWWIGALGGAFAIIVTKHLFGGLGQNLFNPAMAARVMLLISFPVEMTQWLLPTPETLPGAIEALSITFG
AGVPDAMSSASLLGHVKSEATKGILLGQSLTGHYSAAAFGLGDRQGSLGETSALLLLAGGVFLIFQRIITARIPLAFLAG
VAAPAALASAIAPDLYLGPLTHLLSGGVMLAAFFIATDYVTSPSTPLGQWIFGIGCGLLTWIIRTWGAYPEGIAFAVMLM
NATAPLIDQYTRPRIFGRSRDGRALNPAESR

Sequences:

>Translated_351_residues
MNAISSPHAHGARKVGRVMTLVMLALVPATLAGFWRFGWPAVYLWLVTLLSCLLAEAFSTRIRGIDTRRALFDGSAVLTG
WLLALSLPPWAPWWIGALGGAFAIIVTKHLFGGLGQNLFNPAMAARVMLLISFPVEMTQWLLPTPETLPGAIEALSITFG
AGVPDAMSSASLLGHVKSEATKGILLGQSLTGHYSAAAFGLGDRQGSLGETSALLLLAGGVFLIFQRIITARIPLAFLAG
VAAPAALASAIAPDLYLGPLTHLLSGGVMLAAFFIATDYVTSPSTPLGQWIFGIGCGLLTWIIRTWGAYPEGIAFAVMLM
NATAPLIDQYTRPRIFGRSRDGRALNPAESR
>Mature_351_residues
MNAISSPHAHGARKVGRVMTLVMLALVPATLAGFWRFGWPAVYLWLVTLLSCLLAEAFSTRIRGIDTRRALFDGSAVLTG
WLLALSLPPWAPWWIGALGGAFAIIVTKHLFGGLGQNLFNPAMAARVMLLISFPVEMTQWLLPTPETLPGAIEALSITFG
AGVPDAMSSASLLGHVKSEATKGILLGQSLTGHYSAAAFGLGDRQGSLGETSALLLLAGGVFLIFQRIITARIPLAFLAG
VAAPAALASAIAPDLYLGPLTHLLSGGVMLAAFFIATDYVTSPSTPLGQWIFGIGCGLLTWIIRTWGAYPEGIAFAVMLM
NATAPLIDQYTRPRIFGRSRDGRALNPAESR

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=351, Percent_Identity=44.4444444444444, Blast_Score=258, Evalue=4e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 37166; Mature: 37166

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAISSPHAHGARKVGRVMTLVMLALVPATLAGFWRFGWPAVYLWLVTLLSCLLAEAFST
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIRGIDTRRALFDGSAVLTGWLLALSLPPWAPWWIGALGGAFAIIVTKHLFGGLGQNLFN
HHCCCCHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PAMAARVMLLISFPVEMTQWLLPTPETLPGAIEALSITFGAGVPDAMSSASLLGHVKSEA
HHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
TKGILLGQSLTGHYSAAAFGLGDRQGSLGETSALLLLAGGVFLIFQRIITARIPLAFLAG
HCCEEECCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAAPAALASAIAPDLYLGPLTHLLSGGVMLAAFFIATDYVTSPSTPLGQWIFGIGCGLLT
HHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
WIIRTWGAYPEGIAFAVMLMNATAPLIDQYTRPRIFGRSRDGRALNPAESR
HHHHHHCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNAISSPHAHGARKVGRVMTLVMLALVPATLAGFWRFGWPAVYLWLVTLLSCLLAEAFST
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIRGIDTRRALFDGSAVLTGWLLALSLPPWAPWWIGALGGAFAIIVTKHLFGGLGQNLFN
HHCCCCHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PAMAARVMLLISFPVEMTQWLLPTPETLPGAIEALSITFGAGVPDAMSSASLLGHVKSEA
HHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
TKGILLGQSLTGHYSAAAFGLGDRQGSLGETSALLLLAGGVFLIFQRIITARIPLAFLAG
HCCEEECCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAAPAALASAIAPDLYLGPLTHLLSGGVMLAAFFIATDYVTSPSTPLGQWIFGIGCGLLT
HHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
WIIRTWGAYPEGIAFAVMLMNATAPLIDQYTRPRIFGRSRDGRALNPAESR
HHHHHHCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA