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The map label for this gene is ydaM [C]

Identifier: 119896741

GI number: 119896741

Start: 480291

End: 482036

Strand: Direct

Name: ydaM [C]

Synonym: azo0450

Alternate gene names: 119896741

Gene position: 480291-482036 (Clockwise)

Preceding gene: 119896737

Following gene: 119896746

Centisome position: 10.98

GC content: 71.53

Gene sequence:

>1746_bases
ATGCTGGCGACCCTCGGCGTCGCCGCGGCAGGGCTGGTGCTGTTCACCGGCGACCTGCTCGAAGGCCGGCTGCACGAGCG
CTGGCGCGCCGAGCGCCTGTCCGAGCTGTCGGGCTTGCGCGCCCAGCTCGAAGGCCGGCTCAACGGGGCGATCAACCTCA
CCGCGGGCCTGGTGGCCCACGTCGCGGTGCACGGCGGCATCGGCGAGGAGGAATTCGAACGCCTCGCGGCCGAGCTGATG
GTCGAACGCAGCCTGCTGCGCAACATCACGCTGGCGCCGGGCAACGTCATCGGCATGGTGTATCCGCTGCGCGGCAACGA
GCGCGCAATCGGGCTCGACCTGCTCAACCATCCGGTGCAGGGTGCGGCCACGCGGCGCATGCTCGCGCTCAACCGGCCGG
TGCTGGCCGGGCCGGTAGACCTGGTGCAGGGCGGCCGGGCGCTGATCCACCGGGTGCCGATCTTCCTTTCTCCGCCCGAC
GGGCCGCCGCGCAGCGGCAGCTACTGGGGGTTGATGAGCACCCCGATCGACTTCGACGGGCTGCTCGCGCAGGCCGGCCT
CACCGATCCGCGCCTGCGCTTCCGCATCGCGCTGCGCGGCGTGGACGGGATGGGTGCCGACGGCGCGGTGTTCTGGGGCG
ACGCGGCGCTGTTCGACGACCGCGACGCGATCGCGCTCGACATCCAGGTGCTCAATGGCTCGTGGCGCATGGCGGCGCTG
CCGCTGGACGAGCCGGCGGTGGGCAACACCGTGTGGGCGGCGCGCGCGGCCGCGGTGCTGCTGGTGCTGGTGACGCTGGC
GATGGTGCTGCGGCTGCGCAGCATGGATCTGCGCCTCACCGAATCGGAAGCGCTTCACCGCGAGCTGGCCGAGCAGATCC
GCGACGTGCTGTTCCGCACCGACGCCGCCGGGCGGGTGATCTACCTGAACCCGGCGTGGACCCAGATCACCGGGCGCGAG
GTCAGCACCTGCCTGGGCTATCACTGGACCGAGCTGGTCGAGGTCGAACCGGGCGACGGCGTGCGCCTGCGCACCGCCAA
GCTGCTGTCCGACGCCCGTCACGACGGCGGCAACACGCCGGCCCTGCAGAACGAGCGGGTCCATCTGACCGATTGCGACG
GCACGCGGCGCACGCTGGTCGTGCGTGCCGGCGTGCACCGCAACCCCGCTGGCGCGGTCGAAGGCGTGGTCGGCATCATG
GTGGATATTTCCGAGCAGGAACGGCTGGAGGCGCGGGTGCGCCATCTGGCACTGCACGACAGCCTGACCGGGCTTGCCAA
CCGCGTGCTGCTCGCCAGCCGCTTCCAGCAGGCGGCGGAGTTCGCCCGCCGCATGGGCCACCGCATGGCGGTGCTCTACC
TCGATCTGGACGGCTTCAAGCCGATCAACGACGGCTATGGCCACGAGACTGGCGACCGCGTGCTGTGCGGCATCGGCGAG
CGCCTGCAACTGAGCGTGCGCGAGAGCGACACGGTGGCGCGCGTGGGAGGCGACGAGTTCGTCATCCTGCTCGGCCAGGT
GCTGTCGGTGGATGACGCGCGCGCGGTGGCGCTGAAGGTGCAGGACGTGCTGGCGCCGGCGCTGGTGGTGGGCGAACAGC
GCTTTTCGGTGCGCGCCAGCATCGGCATCAGCGTGTTTCCGGACCACGGCGGTTCGCTGGACGAACTGCTGCGCGCGGCG
GACCGCGCGATGTACCGGGTGAAGAGCGCCGCCGCGGGCGGTCACATCGGCGTCATCGACGCCTGA

Upstream 100 bases:

>100_bases
GCGGAGCTTGCGATGCCTAAAATGACGGCTATGTCATGAACCCCCTTGCAGGAGCTTCTTCCGCGTGCAGCGCAGAACCC
GTCGATCCTGGACCAGCGTG

Downstream 100 bases:

>100_bases
GGCGGCGGGCGTCCGCTCAATCCTGCTGGCCGGGGAAGGTGTCGCGCCACTCCACGCTCTCGGGCGCGAAGCGGGCGATG
CGCAGTGAACCGAGGAAGGC

Product: PAS/PAC/GGDEF-domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 581; Mature: 581

Protein sequence:

>581_residues
MLATLGVAAAGLVLFTGDLLEGRLHERWRAERLSELSGLRAQLEGRLNGAINLTAGLVAHVAVHGGIGEEEFERLAAELM
VERSLLRNITLAPGNVIGMVYPLRGNERAIGLDLLNHPVQGAATRRMLALNRPVLAGPVDLVQGGRALIHRVPIFLSPPD
GPPRSGSYWGLMSTPIDFDGLLAQAGLTDPRLRFRIALRGVDGMGADGAVFWGDAALFDDRDAIALDIQVLNGSWRMAAL
PLDEPAVGNTVWAARAAAVLLVLVTLAMVLRLRSMDLRLTESEALHRELAEQIRDVLFRTDAAGRVIYLNPAWTQITGRE
VSTCLGYHWTELVEVEPGDGVRLRTAKLLSDARHDGGNTPALQNERVHLTDCDGTRRTLVVRAGVHRNPAGAVEGVVGIM
VDISEQERLEARVRHLALHDSLTGLANRVLLASRFQQAAEFARRMGHRMAVLYLDLDGFKPINDGYGHETGDRVLCGIGE
RLQLSVRESDTVARVGGDEFVILLGQVLSVDDARAVALKVQDVLAPALVVGEQRFSVRASIGISVFPDHGGSLDELLRAA
DRAMYRVKSAAAGGHIGVIDA

Sequences:

>Translated_581_residues
MLATLGVAAAGLVLFTGDLLEGRLHERWRAERLSELSGLRAQLEGRLNGAINLTAGLVAHVAVHGGIGEEEFERLAAELM
VERSLLRNITLAPGNVIGMVYPLRGNERAIGLDLLNHPVQGAATRRMLALNRPVLAGPVDLVQGGRALIHRVPIFLSPPD
GPPRSGSYWGLMSTPIDFDGLLAQAGLTDPRLRFRIALRGVDGMGADGAVFWGDAALFDDRDAIALDIQVLNGSWRMAAL
PLDEPAVGNTVWAARAAAVLLVLVTLAMVLRLRSMDLRLTESEALHRELAEQIRDVLFRTDAAGRVIYLNPAWTQITGRE
VSTCLGYHWTELVEVEPGDGVRLRTAKLLSDARHDGGNTPALQNERVHLTDCDGTRRTLVVRAGVHRNPAGAVEGVVGIM
VDISEQERLEARVRHLALHDSLTGLANRVLLASRFQQAAEFARRMGHRMAVLYLDLDGFKPINDGYGHETGDRVLCGIGE
RLQLSVRESDTVARVGGDEFVILLGQVLSVDDARAVALKVQDVLAPALVVGEQRFSVRASIGISVFPDHGGSLDELLRAA
DRAMYRVKSAAAGGHIGVIDA
>Mature_581_residues
MLATLGVAAAGLVLFTGDLLEGRLHERWRAERLSELSGLRAQLEGRLNGAINLTAGLVAHVAVHGGIGEEEFERLAAELM
VERSLLRNITLAPGNVIGMVYPLRGNERAIGLDLLNHPVQGAATRRMLALNRPVLAGPVDLVQGGRALIHRVPIFLSPPD
GPPRSGSYWGLMSTPIDFDGLLAQAGLTDPRLRFRIALRGVDGMGADGAVFWGDAALFDDRDAIALDIQVLNGSWRMAAL
PLDEPAVGNTVWAARAAAVLLVLVTLAMVLRLRSMDLRLTESEALHRELAEQIRDVLFRTDAAGRVIYLNPAWTQITGRE
VSTCLGYHWTELVEVEPGDGVRLRTAKLLSDARHDGGNTPALQNERVHLTDCDGTRRTLVVRAGVHRNPAGAVEGVVGIM
VDISEQERLEARVRHLALHDSLTGLANRVLLASRFQQAAEFARRMGHRMAVLYLDLDGFKPINDGYGHETGDRVLCGIGE
RLQLSVRESDTVARVGGDEFVILLGQVLSVDDARAVALKVQDVLAPALVVGEQRFSVRASIGISVFPDHGGSLDELLRAA
DRAMYRVKSAAAGGHIGVIDA

Specific function: Unknown

COG id: COG3452

COG function: function code T; Predicted periplasmic ligand-binding sensor domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=38.0681818181818, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1787541, Length=203, Percent_Identity=34.9753694581281, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI1788381, Length=312, Percent_Identity=26.9230769230769, Blast_Score=100, Evalue=5e-22,
Organism=Escherichia coli, GI1786584, Length=170, Percent_Identity=28.2352941176471, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=34.7560975609756, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI87082007, Length=171, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI87081977, Length=153, Percent_Identity=33.9869281045752, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1788956, Length=169, Percent_Identity=36.094674556213, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=29.1925465838509, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787816, Length=152, Percent_Identity=34.2105263157895, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081974, Length=161, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787802, Length=184, Percent_Identity=27.1739130434783, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 62731; Mature: 62731

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS50839 CHASE ; PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLATLGVAAAGLVLFTGDLLEGRLHERWRAERLSELSGLRAQLEGRLNGAINLTAGLVAH
CCCCHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHH
VAVHGGIGEEEFERLAAELMVERSLLRNITLAPGNVIGMVYPLRGNERAIGLDLLNHPVQ
HHHCCCCCHHHHHHHHHHHHHHHHHHHCEECCCCCEEEEEEEECCCCCEEEHHHHCCCCC
GAATRRMLALNRPVLAGPVDLVQGGRALIHRVPIFLSPPDGPPRSGSYWGLMSTPIDFDG
CHHHHHHHHHCCCCEECCHHHHHCCHHHHHCCCEEECCCCCCCCCCCCCEEECCCCCHHH
LLAQAGLTDPRLRFRIALRGVDGMGADGAVFWGDAALFDDRDAIALDIQVLNGSWRMAAL
HHHHCCCCCCCEEEEEEEECCCCCCCCCEEEECCEEEECCCCEEEEEEEEECCCEEEEEE
PLDEPAVGNTVWAARAAAVLLVLVTLAMVLRLRSMDLRLTESEALHRELAEQIRDVLFRT
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHCC
DAAGRVIYLNPAWTQITGREVSTCLGYHWTELVEVEPGDGVRLRTAKLLSDARHDGGNTP
CCCCEEEEECCCCCEECCHHHHHHHCCCCEEEEEECCCCCCEEHHHHHHHHHHCCCCCCC
ALQNERVHLTDCDGTRRTLVVRAGVHRNPAGAVEGVVGIMVDISEQERLEARVRHLALHD
CCCCCEEEEECCCCCCEEEEEEECCCCCCCHHHHCEEEEEEECCHHHHHHHHHHHHHHHH
SLTGLANRVLLASRFQQAAEFARRMGHRMAVLYLDLDGFKPINDGYGHETGDRVLCGIGE
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEECCCC
RLQLSVRESDTVARVGGDEFVILLGQVLSVDDARAVALKVQDVLAPALVVGEQRFSVRAS
EEEEEEECCCCEEEECCCEEEEEEHHHHCCCCCCEEEEEHHHHHHHHHHCCCCCEEEEEE
IGISVFPDHGGSLDELLRAADRAMYRVKSAAAGGHIGVIDA
ECEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECC
>Mature Secondary Structure
MLATLGVAAAGLVLFTGDLLEGRLHERWRAERLSELSGLRAQLEGRLNGAINLTAGLVAH
CCCCHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHH
VAVHGGIGEEEFERLAAELMVERSLLRNITLAPGNVIGMVYPLRGNERAIGLDLLNHPVQ
HHHCCCCCHHHHHHHHHHHHHHHHHHHCEECCCCCEEEEEEEECCCCCEEEHHHHCCCCC
GAATRRMLALNRPVLAGPVDLVQGGRALIHRVPIFLSPPDGPPRSGSYWGLMSTPIDFDG
CHHHHHHHHHCCCCEECCHHHHHCCHHHHHCCCEEECCCCCCCCCCCCCEEECCCCCHHH
LLAQAGLTDPRLRFRIALRGVDGMGADGAVFWGDAALFDDRDAIALDIQVLNGSWRMAAL
HHHHCCCCCCCEEEEEEEECCCCCCCCCEEEECCEEEECCCCEEEEEEEEECCCEEEEEE
PLDEPAVGNTVWAARAAAVLLVLVTLAMVLRLRSMDLRLTESEALHRELAEQIRDVLFRT
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHCC
DAAGRVIYLNPAWTQITGREVSTCLGYHWTELVEVEPGDGVRLRTAKLLSDARHDGGNTP
CCCCEEEEECCCCCEECCHHHHHHHCCCCEEEEEECCCCCCEEHHHHHHHHHHCCCCCCC
ALQNERVHLTDCDGTRRTLVVRAGVHRNPAGAVEGVVGIMVDISEQERLEARVRHLALHD
CCCCCEEEEECCCCCCEEEEEEECCCCCCCHHHHCEEEEEEECCHHHHHHHHHHHHHHHH
SLTGLANRVLLASRFQQAAEFARRMGHRMAVLYLDLDGFKPINDGYGHETGDRVLCGIGE
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEECCCC
RLQLSVRESDTVARVGGDEFVILLGQVLSVDDARAVALKVQDVLAPALVVGEQRFSVRAS
EEEEEEECCCCEEEECCCEEEEEEHHHHCCCCCCEEEEEHHHHHHHHHHCCCCCEEEEEE
IGISVFPDHGGSLDELLRAADRAMYRVKSAAAGGHIGVIDA
ECEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]