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The map label for this gene is pal [H]

Identifier: 119896707

GI number: 119896707

Start: 441562

End: 442080

Strand: Reverse

Name: pal [H]

Synonym: azo0416

Alternate gene names: 119896707

Gene position: 442080-441562 (Counterclockwise)

Preceding gene: 119896708

Following gene: 119896706

Centisome position: 10.1

GC content: 67.05

Gene sequence:

>519_bases
ATGAAGAAGCTTGTCCTGCCCGCTCTGCTGTCCGCCGTTCTGGCTGCGTGCTCCAGCACCGGTCCCGAAGCGACCTCCGG
CGCTGCCGTCACCGACCGCTCCGGCGCCGGCGTGGCCACCGTGACCGCCAACACCCCGTCCGGCTCCGGCATCGCCGCGC
TGACCGACCCGAACAACATCCTGTCCAAGCGCAATGTGTTCTTCGACTTCGACAGCTATGTGATCAAGGCCGACGCCAAG
CCGCTGGTCGAAGCCCACGGCCGCTTCCTCGCCCAGAACCCGCAGATGAAGATGCTGGTCCAGGGCAACGCCGACGAGCG
CGGCAGCCGCGAATACAACCTGGCGCTGGGCCAGAAGCGCGCCGACGCCGTCAAGCAGGCCCTGCTGCTGCTGGGCGCCA
AGGAAGCGCAGATCGAGTCCGTCAGCCTCGGCGAAGAAAAGCCGCGCTGCACCGAAAGCTCGGAAGCCTGCTTTGCCCAG
AACCGCCGCGGCGACATGCTGTACTCGGGCGAGTTCTGA

Upstream 100 bases:

>100_bases
CCTTTCGGTGCAGGCCGCCGATGTACGGGAACCCGCCTGGGGCCCCTTGCAAAAGCAATAACGCTGCTGTCCCCCTAAAA
AACGACTTGGAGAAACATCC

Downstream 100 bases:

>100_bases
TGAAGCGCCTCCTGCCGCTGGCGGCGCTTCTCGCACTGTCTTCGGCCGGGCCCGCCCACGCGGGCCTGTTCGACGACAAC
GAAGCGCGCCGCCAAATCTA

Product: putative peptidoglycan-associated lipoprotein

Products: NA

Alternate protein names: OMP P6; P6-like; Peptidoglycan-associated lipoprotein [H]

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MKKLVLPALLSAVLAACSSTGPEATSGAAVTDRSGAGVATVTANTPSGSGIAALTDPNNILSKRNVFFDFDSYVIKADAK
PLVEAHGRFLAQNPQMKMLVQGNADERGSREYNLALGQKRADAVKQALLLLGAKEAQIESVSLGEEKPRCTESSEACFAQ
NRRGDMLYSGEF

Sequences:

>Translated_172_residues
MKKLVLPALLSAVLAACSSTGPEATSGAAVTDRSGAGVATVTANTPSGSGIAALTDPNNILSKRNVFFDFDSYVIKADAK
PLVEAHGRFLAQNPQMKMLVQGNADERGSREYNLALGQKRADAVKQALLLLGAKEAQIESVSLGEEKPRCTESSEACFAQ
NRRGDMLYSGEF
>Mature_172_residues
MKKLVLPALLSAVLAACSSTGPEATSGAAVTDRSGAGVATVTANTPSGSGIAALTDPNNILSKRNVFFDFDSYVIKADAK
PLVEAHGRFLAQNPQMKMLVQGNADERGSREYNLALGQKRADAVKQALLLLGAKEAQIESVSLGEEKPRCTESSEACFAQ
NRRGDMLYSGEF

Specific function: Thought to play a role in bacterial envelope integrity. Links the outer membrane to the peptidoglycan layer [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=166, Percent_Identity=36.7469879518072, Blast_Score=105, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 18151; Mature: 18151

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLVLPALLSAVLAACSSTGPEATSGAAVTDRSGAGVATVTANTPSGSGIAALTDPNNI
CCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCEEEEECCHHH
LSKRNVFFDFDSYVIKADAKPLVEAHGRFLAQNPQMKMLVQGNADERGSREYNLALGQKR
HHCCCEEEECCCEEEECCCCHHHHHCCCEEECCCCEEEEEECCCCCCCCCEEEEECCCHH
ADAVKQALLLLGAKEAQIESVSLGEEKPRCTESSEACFAQNRRGDMLYSGEF
HHHHHHHHHHHCCCCHHEEEECCCCCCCCCCCCCCHHHHCCCCCCEEECCCC
>Mature Secondary Structure
MKKLVLPALLSAVLAACSSTGPEATSGAAVTDRSGAGVATVTANTPSGSGIAALTDPNNI
CCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCEEEEECCHHH
LSKRNVFFDFDSYVIKADAKPLVEAHGRFLAQNPQMKMLVQGNADERGSREYNLALGQKR
HHCCCEEEECCCEEEECCCCHHHHHCCCEEECCCCEEEEEECCCCCCCCCEEEEECCCHH
ADAVKQALLLLGAKEAQIESVSLGEEKPRCTESSEACFAQNRRGDMLYSGEF
HHHHHHHHHHHCCCCHHEEEECCCCCCCCCCCCCCHHHHCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7868272; 11248100 [H]