| Definition | Azoarcus sp. BH72 chromosome, complete genome. |
|---|---|
| Accession | NC_008702 |
| Length | 4,376,040 |
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The map label for this gene is cirA [C]
Identifier: 119896669
GI number: 119896669
Start: 403712
End: 405787
Strand: Reverse
Name: cirA [C]
Synonym: azo0378
Alternate gene names: 119896669
Gene position: 405787-403712 (Counterclockwise)
Preceding gene: 119896670
Following gene: 119896668
Centisome position: 9.27
GC content: 71.29
Gene sequence:
>2076_bases ATGCTGCCCCGCCTTTCCCCGCTCTCGCTCGCCCTCCTTTGCGCGCTCGGCACCGCCCACGCTGCCGCCCAATCGGCAGC CCCCAACGACCCCACCGCCGCGCCGCCGGTCCAGCTCGAAGCCGTCACCGTTTCGGCCAGCGGGCTCGACGTCGACAGCG GCGCGATGAGCACGCCGGCCACCGTGCTCGGCGGCGACGAACTCGTGCGCCGGCGCGCGGCGACGCTGGGTGAAACCCTC GCCACCGAGCCCGGCATCCACGCCACCGAATTCGGCGCCGGCGCCAGCCGCCCGGTGATCCGCGGCATGGACGGGGCGCG CGTGCGGCTGCTGAGCGACGGCGCGGAGATCATGGACGCCTCCACCATCAGCCCGGACCACGCGGTGGCGGCCGAGCCGC TGCTCAGCGAGCGCATCGAGGTGCTGCGCGGCCCGTCCGCGCTCGCCTACGGCGGCGGGGCGGTGGGCGGCGTGGTGAAT GTGCTCGATCGCCGTATCCCCACCGCGATTCCGGAGCGCGGCGTGGAGGGCAGCGTGGAACTGCGCGGCAACACCGCCGC GCGCGAAGCCGCCGGCGCGTTCGAAGTGACCGCCGGCGCCGGCAACATCGCGATCCACGCCGAAGGCCTCAAGCGCGACG CGCGCGACTACCGCGTCGGCGACGGATGGGCGGGCGGACGCCGGGTGGACGGCAGCTACAACGAAACCGAAACCGGCAGC CTTGGCCTGTCGTGGATTGGCGAGCGCGGTTACCTCGGCGTCGCCTGGACCCGTCAGCGCAACGAATACGGCCTGCCCGG CCACGCCCACGACCTGGAGGACTGCCACACCCACGGCAACAGCCTGCACTGCGGCGGCCACGACGGCGACGACGAGGACG ACCACGACCACGCCGACGAAGGCGGCGGCGTACCCTACGTGAAGCTCGACAGCGAACGCTGGGATCTGCGCGGGGAATAC CGCGAACCCTTCGCCGGCATCAGCCGGCTGCGCGTGCGCGCCAGCCACACCCGCTACCGCCACGACGAGATCGAAGACGG CGCGGTCTCCACCCGCTTCCGCAACAACGCCAGCGAAGGCCGGGTGGAACTGCAGCACGCGCCGCTGGGCGGCTGGCGCG GGGTGTTCGGGCTGCAGACCACGCGGCGCGACTTCTCCGCCATCGGCGAGGAGGCCTATGTGCCGCCCACGCTCACCCGC CGCCACGGCGCCTTCCTGATCGAGGAGTACCCCACCGGCGACTGGCGTTTCGAAGCCGGCCTGCGCCACGAATGGCAGCA GGTGGAGGTCGATGCCGACGCGCGCGACCGCAGCCATCGCGGCAACTCGCTGTCGCTCGGCGCGGTGTGGAACTTCGCCC CCGATTACGCGCTGGGCCTGTCGCTGGCGCGCGCGCAACGGCTGCCCACCGCCGAGGAGTTGTACGCCGATGGCCTGCAC ATGGCGACGCGCACGATCGAACGCGGCAACGCCGACCTGAAGGCCGAGACTTCGCACAATATCGACCTCAGCCTGAAGAA GCTGGCCGGCGCCACCACCTTCAACCTCAGCGTGTTCCACAACCGGGTGAACGACTTCATCTACGCCCACACGCTGGATG CGCTGGAGGGCATGCAACTGATCGAATACGCCCAGCGCGACGCCATCTTCACCGGCGTGGAAGGCCAAGTCCGCCAGCAG CTCGACCGCGTGTTCGGGCTCACGCTGTTCGGCGACTACGTGCGCGCACGCCTCGCTGGCGGCGACGGCGACCGCGACCG CGACCTGCCGCGCATCCCGGCGCACCGCGTCGGCCTGCGGCTGGACGCGCGCCAGGGCGCGTGGCAGGGCGAACTGGAGG TCTATCGCGTCGGCCGCCAGCGCCAGGTCGCCGAGTTCGAGAGCAGCACGCCGGGCTACAACATGGTCAACCTCGGCGCC AGCTACGCCGGCCGCATCGCCAGCGTGCCCTACCTGTTCTACGTGAAGGCGGCCAACCTCACCGACGAACTCGCCTACAG CCACACCTCCTTCATCAAGGACGCCGCCCCGCTGATGGGCCGCAACCTGACCATGGGGGTGAAAGTGACGTTCTGA
Upstream 100 bases:
>100_bases GCTGCCGGTGCGCCACGCTTGCGTGCGCGCCGCCCGAGGCCGTGCGCCGATACGCGCCTGTCTCCCGCACCTGTGCCGGC AGCCCGCCAGGACAATGACA
Downstream 100 bases:
>100_bases CCGGGAACAGTGGGCGCTCCCCCGGGCGGGATTCGCCGAGCAGCGCGCTGGCGCGGTGGAGCGGACCACGAGCGTCCCGG ACCGGGATGGGGATGAGGTC
Product: putative TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 691; Mature: 691
Protein sequence:
>691_residues MLPRLSPLSLALLCALGTAHAAAQSAAPNDPTAAPPVQLEAVTVSASGLDVDSGAMSTPATVLGGDELVRRRAATLGETL ATEPGIHATEFGAGASRPVIRGMDGARVRLLSDGAEIMDASTISPDHAVAAEPLLSERIEVLRGPSALAYGGGAVGGVVN VLDRRIPTAIPERGVEGSVELRGNTAAREAAGAFEVTAGAGNIAIHAEGLKRDARDYRVGDGWAGGRRVDGSYNETETGS LGLSWIGERGYLGVAWTRQRNEYGLPGHAHDLEDCHTHGNSLHCGGHDGDDEDDHDHADEGGGVPYVKLDSERWDLRGEY REPFAGISRLRVRASHTRYRHDEIEDGAVSTRFRNNASEGRVELQHAPLGGWRGVFGLQTTRRDFSAIGEEAYVPPTLTR RHGAFLIEEYPTGDWRFEAGLRHEWQQVEVDADARDRSHRGNSLSLGAVWNFAPDYALGLSLARAQRLPTAEELYADGLH MATRTIERGNADLKAETSHNIDLSLKKLAGATTFNLSVFHNRVNDFIYAHTLDALEGMQLIEYAQRDAIFTGVEGQVRQQ LDRVFGLTLFGDYVRARLAGGDGDRDRDLPRIPAHRVGLRLDARQGAWQGELEVYRVGRQRQVAEFESSTPGYNMVNLGA SYAGRIASVPYLFYVKAANLTDELAYSHTSFIKDAAPLMGRNLTMGVKVTF
Sequences:
>Translated_691_residues MLPRLSPLSLALLCALGTAHAAAQSAAPNDPTAAPPVQLEAVTVSASGLDVDSGAMSTPATVLGGDELVRRRAATLGETL ATEPGIHATEFGAGASRPVIRGMDGARVRLLSDGAEIMDASTISPDHAVAAEPLLSERIEVLRGPSALAYGGGAVGGVVN VLDRRIPTAIPERGVEGSVELRGNTAAREAAGAFEVTAGAGNIAIHAEGLKRDARDYRVGDGWAGGRRVDGSYNETETGS LGLSWIGERGYLGVAWTRQRNEYGLPGHAHDLEDCHTHGNSLHCGGHDGDDEDDHDHADEGGGVPYVKLDSERWDLRGEY REPFAGISRLRVRASHTRYRHDEIEDGAVSTRFRNNASEGRVELQHAPLGGWRGVFGLQTTRRDFSAIGEEAYVPPTLTR RHGAFLIEEYPTGDWRFEAGLRHEWQQVEVDADARDRSHRGNSLSLGAVWNFAPDYALGLSLARAQRLPTAEELYADGLH MATRTIERGNADLKAETSHNIDLSLKKLAGATTFNLSVFHNRVNDFIYAHTLDALEGMQLIEYAQRDAIFTGVEGQVRQQ LDRVFGLTLFGDYVRARLAGGDGDRDRDLPRIPAHRVGLRLDARQGAWQGELEVYRVGRQRQVAEFESSTPGYNMVNLGA SYAGRIASVPYLFYVKAANLTDELAYSHTSFIKDAAPLMGRNLTMGVKVTF >Mature_691_residues MLPRLSPLSLALLCALGTAHAAAQSAAPNDPTAAPPVQLEAVTVSASGLDVDSGAMSTPATVLGGDELVRRRAATLGETL ATEPGIHATEFGAGASRPVIRGMDGARVRLLSDGAEIMDASTISPDHAVAAEPLLSERIEVLRGPSALAYGGGAVGGVVN VLDRRIPTAIPERGVEGSVELRGNTAAREAAGAFEVTAGAGNIAIHAEGLKRDARDYRVGDGWAGGRRVDGSYNETETGS LGLSWIGERGYLGVAWTRQRNEYGLPGHAHDLEDCHTHGNSLHCGGHDGDDEDDHDHADEGGGVPYVKLDSERWDLRGEY REPFAGISRLRVRASHTRYRHDEIEDGAVSTRFRNNASEGRVELQHAPLGGWRGVFGLQTTRRDFSAIGEEAYVPPTLTR RHGAFLIEEYPTGDWRFEAGLRHEWQQVEVDADARDRSHRGNSLSLGAVWNFAPDYALGLSLARAQRLPTAEELYADGLH MATRTIERGNADLKAETSHNIDLSLKKLAGATTFNLSVFHNRVNDFIYAHTLDALEGMQLIEYAQRDAIFTGVEGQVRQQ LDRVFGLTLFGDYVRARLAGGDGDRDRDLPRIPAHRVGLRLDARQGAWQGELEVYRVGRQRQVAEFESSTPGYNMVNLGA SYAGRIASVPYLFYVKAANLTDELAYSHTSFIKDAAPLMGRNLTMGVKVTF
Specific function: Probable receptor, tonB-dependent [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=166, Percent_Identity=28.9156626506024, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1790405, Length=164, Percent_Identity=26.219512195122, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI1786798, Length=172, Percent_Identity=30.2325581395349, Blast_Score=64, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 74808; Mature: 74808
Theoretical pI: Translated: 5.76; Mature: 5.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPRLSPLSLALLCALGTAHAAAQSAAPNDPTAAPPVQLEAVTVSASGLDVDSGAMSTPA CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCC TVLGGDELVRRRAATLGETLATEPGIHATEFGAGASRPVIRGMDGARVRLLSDGAEIMDA EEECCHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHCCCCCCEEEEEECCHHHHCC STISPDHAVAAEPLLSERIEVLRGPSALAYGGGAVGGVVNVLDRRIPTAIPERGVEGSVE CCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEE LRGNTAAREAAGAFEVTAGAGNIAIHAEGLKRDARDYRVGDGWAGGRRVDGSYNETETGS ECCCCHHHHHCCCEEEECCCCCEEEEECCCCCCHHHCCCCCCCCCCEEECCCCCCCCCCC LGLSWIGERGYLGVAWTRQRNEYGLPGHAHDLEDCHTHGNSLHCGGHDGDDEDDHDHADE CCEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCC GGGVPYVKLDSERWDLRGEYREPFAGISRLRVRASHTRYRHDEIEDGAVSTRFRNNASEG CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCC RVELQHAPLGGWRGVFGLQTTRRDFSAIGEEAYVPPTLTRRHGAFLIEEYPTGDWRFEAG EEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCEEECCC LRHEWQQVEVDADARDRSHRGNSLSLGAVWNFAPDYALGLSLARAQRLPTAEELYADGLH CCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHCCHH MATRTIERGNADLKAETSHNIDLSLKKLAGATTFNLSVFHNRVNDFIYAHTLDALEGMQL HHHHHHHCCCCCEEECCCCCCCEEHHHHCCCEEEEHHHHHHHHHHEEHHHHHHHHHHHHH IEYAQRDAIFTGVEGQVRQQLDRVFGLTLFGDYVRARLAGGDGDRDRDLPRIPAHRVGLR HHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCHHHHCEE LDARQGAWQGELEVYRVGRQRQVAEFESSTPGYNMVNLGASYAGRIASVPYLFYVKAANL EECCCCCCCCCEEEEECCCHHHHHHHHCCCCCCEEEECCCHHHCHHHCCCEEEEEEECCC TDELAYSHTSFIKDAAPLMGRNLTMGVKVTF HHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC >Mature Secondary Structure MLPRLSPLSLALLCALGTAHAAAQSAAPNDPTAAPPVQLEAVTVSASGLDVDSGAMSTPA CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCC TVLGGDELVRRRAATLGETLATEPGIHATEFGAGASRPVIRGMDGARVRLLSDGAEIMDA EEECCHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHCCCCCCEEEEEECCHHHHCC STISPDHAVAAEPLLSERIEVLRGPSALAYGGGAVGGVVNVLDRRIPTAIPERGVEGSVE CCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEE LRGNTAAREAAGAFEVTAGAGNIAIHAEGLKRDARDYRVGDGWAGGRRVDGSYNETETGS ECCCCHHHHHCCCEEEECCCCCEEEEECCCCCCHHHCCCCCCCCCCEEECCCCCCCCCCC LGLSWIGERGYLGVAWTRQRNEYGLPGHAHDLEDCHTHGNSLHCGGHDGDDEDDHDHADE CCEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCC GGGVPYVKLDSERWDLRGEYREPFAGISRLRVRASHTRYRHDEIEDGAVSTRFRNNASEG CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCC RVELQHAPLGGWRGVFGLQTTRRDFSAIGEEAYVPPTLTRRHGAFLIEEYPTGDWRFEAG EEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCEEECCC LRHEWQQVEVDADARDRSHRGNSLSLGAVWNFAPDYALGLSLARAQRLPTAEELYADGLH CCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHCCHH MATRTIERGNADLKAETSHNIDLSLKKLAGATTFNLSVFHNRVNDFIYAHTLDALEGMQL HHHHHHHCCCCCEEECCCCCCCEEHHHHCCCEEEEHHHHHHHHHHEEHHHHHHHHHHHHH IEYAQRDAIFTGVEGQVRQQLDRVFGLTLFGDYVRARLAGGDGDRDRDLPRIPAHRVGLR HHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCHHHHCEE LDARQGAWQGELEVYRVGRQRQVAEFESSTPGYNMVNLGASYAGRIASVPYLFYVKAANL EECCCCCCCCCEEEEECCCHHHHHHHHCCCCCCEEEECCCHHHCHHHCCCEEEEEEECCC TDELAYSHTSFIKDAAPLMGRNLTMGVKVTF HHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]