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The map label for this gene is ybfI [H]

Identifier: 119896497

GI number: 119896497

Start: 228076

End: 228660

Strand: Reverse

Name: ybfI [H]

Synonym: azo0206

Alternate gene names: 119896497

Gene position: 228660-228076 (Counterclockwise)

Preceding gene: 119896499

Following gene: 119896496

Centisome position: 5.23

GC content: 69.23

Gene sequence:

>585_bases
ATGCGGCGGGCACCAGGATTGCACGTTCCTGCCGTGGCGCGCACGGCCGCGGTGCATGCGCAAGGTCGTGCTGCGCGGCC
GTGCAAATCGACATTTGCTGTTGCGGCGACGGGGCATTGCAGCGCCATCGTCGGGGGCATCGCTCCTAAGCTTTTCCCCA
TGGAAACCAAGCCCTTGCCCACCTGTCGCGGCGCCCGGCGCCCCCCCCGCGGCATCGACAACGCCCTCGCCTACATCCAC
CGCCACTTCGACGAGCAGCTATCGCTCGAAGAGCTGGCGGAGATCGCCGGCCTCAGCGTGTGCCGCTTCGCCACCGTGTT
CCGCGAACGCATGGGCATCCCGCCGCACCGCTACATCTGCATCCTGCGCGTGCGCCACGCCCAGGCCCTGCTGCGCAGCG
GCATGCCGGCGGCCAATGTCGCCAGCGAGGCCGGTTTCTACGACCAGAGCCATCTGTCGCGGCACTTCAAGAACATCTGC
GGCATGACGCCCAAGCAGTACCTGCGCGAAGCCGGGCCGCTGCCGGAAGGCGCCTACATCGGCGCGCTGCGCCAGCCCGC
CGCCTTTGCGGCCCACGCCGCATGA

Upstream 100 bases:

>100_bases
CCGGCCCCTGCGCCTCCAGCCCCTGCAAGTCCTCGCTCTGCTTGATGATCCTGATGCCCACAGTCGTCGCTCCTGATAGA
AAACCGGGCGGACGATAGCA

Downstream 100 bases:

>100_bases
GCGCCGCCGCCCGGCCGTCCGCTGGGGGTGCCTCCTCCCCTGGTGAGGATGTCGCGCAGCGACAGGAGGGCAGTTCGGAG
AACATCGCCGACGACGCGCT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MRRAPGLHVPAVARTAAVHAQGRAARPCKSTFAVAATGHCSAIVGGIAPKLFPMETKPLPTCRGARRPPRGIDNALAYIH
RHFDEQLSLEELAEIAGLSVCRFATVFRERMGIPPHRYICILRVRHAQALLRSGMPAANVASEAGFYDQSHLSRHFKNIC
GMTPKQYLREAGPLPEGAYIGALRQPAAFAAHAA

Sequences:

>Translated_194_residues
MRRAPGLHVPAVARTAAVHAQGRAARPCKSTFAVAATGHCSAIVGGIAPKLFPMETKPLPTCRGARRPPRGIDNALAYIH
RHFDEQLSLEELAEIAGLSVCRFATVFRERMGIPPHRYICILRVRHAQALLRSGMPAANVASEAGFYDQSHLSRHFKNIC
GMTPKQYLREAGPLPEGAYIGALRQPAAFAAHAA
>Mature_194_residues
MRRAPGLHVPAVARTAAVHAQGRAARPCKSTFAVAATGHCSAIVGGIAPKLFPMETKPLPTCRGARRPPRGIDNALAYIH
RHFDEQLSLEELAEIAGLSVCRFATVFRERMGIPPHRYICILRVRHAQALLRSGMPAANVASEAGFYDQSHLSRHFKNIC
GMTPKQYLREAGPLPEGAYIGALRQPAAFAAHAA

Specific function: Transcription Activator For The Expression Of The Melab Operon. Melr Binds At Two Sites Located Upstream Of The Melab Transcription Site. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 20993; Mature: 20993

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRAPGLHVPAVARTAAVHAQGRAARPCKSTFAVAATGHCSAIVGGIAPKLFPMETKPLP
CCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHEEEECCHHHHHHHHHCCCCCCCCCCCCC
TCRGARRPPRGIDNALAYIHRHFDEQLSLEELAEIAGLSVCRFATVFRERMGIPPHRYIC
CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEE
ILRVRHAQALLRSGMPAANVASEAGFYDQSHLSRHFKNICGMTPKQYLREAGPLPEGAYI
HHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHH
GALRQPAAFAAHAA
HHHHCCHHHHHCCC
>Mature Secondary Structure
MRRAPGLHVPAVARTAAVHAQGRAARPCKSTFAVAATGHCSAIVGGIAPKLFPMETKPLP
CCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHEEEECCHHHHHHHHHCCCCCCCCCCCCC
TCRGARRPPRGIDNALAYIHRHFDEQLSLEELAEIAGLSVCRFATVFRERMGIPPHRYIC
CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEE
ILRVRHAQALLRSGMPAANVASEAGFYDQSHLSRHFKNICGMTPKQYLREAGPLPEGAYI
HHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHH
GALRQPAAFAAHAA
HHHHCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]