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The map label for this gene is ydeM [H]

Identifier: 119896407

GI number: 119896407

Start: 132910

End: 133359

Strand: Reverse

Name: ydeM [H]

Synonym: azo0115

Alternate gene names: 119896407

Gene position: 133359-132910 (Counterclockwise)

Preceding gene: 119896408

Following gene: 119896404

Centisome position: 3.05

GC content: 67.78

Gene sequence:

>450_bases
ATGGACACCCGCTACCTCGACGACCTGCAGCCCGGCGAACGCTTCTGCACCGGCGGCGTGACGCTGACCGAGGCGGAGAT
CATCGACTTTGCCTGGCGCTACGACCCGCAGCCCTTCCACCTCGACACCGGCGCCGCGGAACAATCGCCCTACGGCGGCC
TGATCGCCAGCGGCTTCCAGAGCCTGGCGCTGTGCTTCCGCCTGTTCATCCAGACCGGCGTGCTGGCGCAGTCCAGCCTG
GGTTCGCCGGGCATCGACGAACTGCGCTGGCTCGCACCGGTACGCCCGGGCGACACCCTGCATTGCGAAGTCGAAGTGCT
GGAGACCCGACCGTCGTCATCCAAGCCGGACCGCGGGATCGCGCGGCTGCGGTACGCGGCACTGAATCAGCGCGGGGAGA
CGGTGATGACCTTTGTCATCGCACATTTGCTGAGGCGGCGGATGGGGTGA

Upstream 100 bases:

>100_bases
CGCTCGAACGTCTGCGCGATCAGGGCGTGGACCGGCTGCACAGCCGCAAGCTGCGCAGCTTCGCCGAAGTGGCGTTCCAG
TAGTCCCCAGGAGAAACGCG

Downstream 100 bases:

>100_bases
GGGGGCTGTTCTTGCCCCTCCTAGAGTGGTTAGAAACCCTGTTCCTCCCCCTTCAAGGGGGAGGTTAGGAGGGGGATGGG
GTTGGGCTGAGCGGCCGCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MDTRYLDDLQPGERFCTGGVTLTEAEIIDFAWRYDPQPFHLDTGAAEQSPYGGLIASGFQSLALCFRLFIQTGVLAQSSL
GSPGIDELRWLAPVRPGDTLHCEVEVLETRPSSSKPDRGIARLRYAALNQRGETVMTFVIAHLLRRRMG

Sequences:

>Translated_149_residues
MDTRYLDDLQPGERFCTGGVTLTEAEIIDFAWRYDPQPFHLDTGAAEQSPYGGLIASGFQSLALCFRLFIQTGVLAQSSL
GSPGIDELRWLAPVRPGDTLHCEVEVLETRPSSSKPDRGIARLRYAALNQRGETVMTFVIAHLLRRRMG
>Mature_149_residues
MDTRYLDDLQPGERFCTGGVTLTEAEIIDFAWRYDPQPFHLDTGAAEQSPYGGLIASGFQSLALCFRLFIQTGVLAQSSL
GSPGIDELRWLAPVRPGDTLHCEVEVLETRPSSSKPDRGIARLRYAALNQRGETVMTFVIAHLLRRRMG

Specific function: Phenylacetic acid aerobic catabolism. [C]

COG id: COG2030

COG function: function code I; Acyl dehydratase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787653, Length=151, Percent_Identity=29.8013245033113, Blast_Score=74, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002539 [H]

Pfam domain/function: PF01575 MaoC_dehydratas [H]

EC number: NA

Molecular weight: Translated: 16555; Mature: 16555

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTRYLDDLQPGERFCTGGVTLTEAEIIDFAWRYDPQPFHLDTGAAEQSPYGGLIASGFQ
CCCCCCCCCCCCCCEECCCCEECHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHH
SLALCFRLFIQTGVLAQSSLGSPGIDELRWLAPVRPGDTLHCEVEVLETRPSSSKPDRGI
HHHHHHHHHHHHCHHHHCCCCCCCHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCHHH
ARLRYAALNQRGETVMTFVIAHLLRRRMG
HHHHHHHHCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDTRYLDDLQPGERFCTGGVTLTEAEIIDFAWRYDPQPFHLDTGAAEQSPYGGLIASGFQ
CCCCCCCCCCCCCCEECCCCEECHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHH
SLALCFRLFIQTGVLAQSSLGSPGIDELRWLAPVRPGDTLHCEVEVLETRPSSSKPDRGI
HHHHHHHHHHHHCHHHHCCCCCCCHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCHHH
ARLRYAALNQRGETVMTFVIAHLLRRRMG
HHHHHHHHCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]