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The map label for this gene is ycaN [H]

Identifier: 119896312

GI number: 119896312

Start: 22404

End: 23309

Strand: Reverse

Name: ycaN [H]

Synonym: azo0020

Alternate gene names: 119896312

Gene position: 23309-22404 (Counterclockwise)

Preceding gene: 119896318

Following gene: 119896310

Centisome position: 0.53

GC content: 69.65

Gene sequence:

>906_bases
ATGATCGAGCCTTCGCTATTACCCGCGCTTGCGGCTTTCGAATGCGTTGCGCGCCACGCCAGTTTCAGTCGCGCGGCGGC
GGAACTGGGCTTGTCGGCGTCGGCGCTGTCGCAATCGGTGAGCACGCTGGAGCGCAGGTTGGGGCTGCGTCTGCTGGCGC
GCACCACGCGCCACGTCGGTCTCACTGAAGAGGGCGCGCGCCTGCTCGACGGCGTGCGGCGCGGGCTGGCGGAACTCGGC
GGCGCGCTCGCGTCGGTGGACCATGCGCGCGAGCAGCCCTCGGGCACGGTGCGGATCACGTTGCCGCGGCTCGCTTTTGC
GCTGTATTTCGCGCCCCATGTGGATGAGTTCGCGCGGCGCTACCCGGAGGTGGGGATCGAGTTCTCGCTCGATGACAAGC
TGGCCGATCTGGTCGCGGACCGCTTCGACATCGGCCTGCGGATGGCGGACAACATCGCCGGCGACATGGTGGCGATCCCG
CTCGGGCGTCCGCAGCGCCTGATCGTCGCCGCGGCGCCGGCGTACTTCGCGCGCCATCCGGTGCCCTTGCAGCCGGCCGA
CCTCGCCGAGCACGACTGCATCCGTTTCCGCTTCCCGACCAGCGGGCGCAACGCGCGCTGGCTGTTCCGGCAGGATGACG
GCGACTTCGAACTCGAGGTTCGCGGCCGCTTTACGGTGAACGATGCCGATGCCGAACTCGACCTGCTGCGCCGCGGCCTG
GGCATCTCGCAGGTGGTGGAATCCATGGTGCAGGACGACCTTGCCGCCGGCCGCCTGCGCGAGGTGCTGGCGGAGTACGC
CTGGCCGATGCCTGTCGCCCACCTGTACTTCCCCAGTCGCGCCCAGATGCCGGCGCGGCTGCGGGTGTTCATCGATTTCT
TCCGCGCGATGAACGCGCCGGCCTGA

Upstream 100 bases:

>100_bases
GCGGTCGTCATGGCTGCCGCACTGAAATGACGTTCAGCTTAGACGCGGATTCTTTTAAGATCGACGCCGCAATCCTGCAT
GCGTCTTTAAGTACTGCTTA

Downstream 100 bases:

>100_bases
ACTACTGCACGTAGCGGCCGCTGCCGCGCACCAGCGAGAGATCGACGTAGCGCGAGCCGGCGCGGCGGCCGGGGCCGAAG
CCGACCTCGTAGCCGCCGAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MIEPSLLPALAAFECVARHASFSRAAAELGLSASALSQSVSTLERRLGLRLLARTTRHVGLTEEGARLLDGVRRGLAELG
GALASVDHAREQPSGTVRITLPRLAFALYFAPHVDEFARRYPEVGIEFSLDDKLADLVADRFDIGLRMADNIAGDMVAIP
LGRPQRLIVAAAPAYFARHPVPLQPADLAEHDCIRFRFPTSGRNARWLFRQDDGDFELEVRGRFTVNDADAELDLLRRGL
GISQVVESMVQDDLAAGRLREVLAEYAWPMPVAHLYFPSRAQMPARLRVFIDFFRAMNAPA

Sequences:

>Translated_301_residues
MIEPSLLPALAAFECVARHASFSRAAAELGLSASALSQSVSTLERRLGLRLLARTTRHVGLTEEGARLLDGVRRGLAELG
GALASVDHAREQPSGTVRITLPRLAFALYFAPHVDEFARRYPEVGIEFSLDDKLADLVADRFDIGLRMADNIAGDMVAIP
LGRPQRLIVAAAPAYFARHPVPLQPADLAEHDCIRFRFPTSGRNARWLFRQDDGDFELEVRGRFTVNDADAELDLLRRGL
GISQVVESMVQDDLAAGRLREVLAEYAWPMPVAHLYFPSRAQMPARLRVFIDFFRAMNAPA
>Mature_301_residues
MIEPSLLPALAAFECVARHASFSRAAAELGLSASALSQSVSTLERRLGLRLLARTTRHVGLTEEGARLLDGVRRGLAELG
GALASVDHAREQPSGTVRITLPRLAFALYFAPHVDEFARRYPEVGIEFSLDDKLADLVADRFDIGLRMADNIAGDMVAIP
LGRPQRLIVAAAPAYFARHPVPLQPADLAEHDCIRFRFPTSGRNARWLFRQDDGDFELEVRGRFTVNDADAELDLLRRGL
GISQVVESMVQDDLAAGRLREVLAEYAWPMPVAHLYFPSRAQMPARLRVFIDFFRAMNAPA

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=287, Percent_Identity=38.3275261324042, Blast_Score=211, Evalue=5e-56,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=35.1724137931034, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=33.4494773519164, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI87081978, Length=291, Percent_Identity=31.9587628865979, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1789440, Length=284, Percent_Identity=30.9859154929577, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=30.4054054054054, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1789639, Length=297, Percent_Identity=28.6195286195286, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788706, Length=258, Percent_Identity=25.5813953488372, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1786448, Length=157, Percent_Identity=34.3949044585987, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788748, Length=155, Percent_Identity=37.4193548387097, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI157672245, Length=170, Percent_Identity=30.5882352941176, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790011, Length=308, Percent_Identity=23.7012987012987, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789173, Length=254, Percent_Identity=27.1653543307087, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788481, Length=297, Percent_Identity=25.5892255892256, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI145693105, Length=242, Percent_Identity=24.7933884297521, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787879, Length=138, Percent_Identity=34.7826086956522, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33284; Mature: 33284

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50931 HTH_LYSR ; PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEPSLLPALAAFECVARHASFSRAAAELGLSASALSQSVSTLERRLGLRLLARTTRHVG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LTEEGARLLDGVRRGLAELGGALASVDHAREQPSGTVRITLPRLAFALYFAPHVDEFARR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH
YPEVGIEFSLDDKLADLVADRFDIGLRMADNIAGDMVAIPLGRPQRLIVAAAPAYFARHP
CCCCCEEEECCHHHHHHHHHHHHHCHHHHCCCCCCEEEEECCCCCEEEEEECCHHHHCCC
VPLQPADLAEHDCIRFRFPTSGRNARWLFRQDDGDFELEVRGRFTVNDADAELDLLRRGL
CCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHCC
GISQVVESMVQDDLAAGRLREVLAEYAWPMPVAHLYFPSRAQMPARLRVFIDFFRAMNAP
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEECCCCCCCCHHHHHHHHHHHHHCCC
A
C
>Mature Secondary Structure
MIEPSLLPALAAFECVARHASFSRAAAELGLSASALSQSVSTLERRLGLRLLARTTRHVG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LTEEGARLLDGVRRGLAELGGALASVDHAREQPSGTVRITLPRLAFALYFAPHVDEFARR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH
YPEVGIEFSLDDKLADLVADRFDIGLRMADNIAGDMVAIPLGRPQRLIVAAAPAYFARHP
CCCCCEEEECCHHHHHHHHHHHHHCHHHHCCCCCCEEEEECCCCCEEEEEECCHHHHCCC
VPLQPADLAEHDCIRFRFPTSGRNARWLFRQDDGDFELEVRGRFTVNDADAELDLLRRGL
CCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHCC
GISQVVESMVQDDLAAGRLREVLAEYAWPMPVAHLYFPSRAQMPARLRVFIDFFRAMNAP
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEECCCCCCCCHHHHHHHHHHHHHCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]