| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776752
Identifier: 119776752
GI number: 119776752
Start: 4260195
End: 4261103
Strand: Direct
Name: 119776752
Synonym: Sama_3620
Alternate gene names: NA
Gene position: 4260195-4261103 (Clockwise)
Preceding gene: 119776751
Following gene: 119776755
Centisome position: 98.93
GC content: 56.44
Gene sequence:
>909_bases ATGACCGACGAAGTGCAGCTGGTGTATATGAGCGCCAAACAGGTGGCCGAATATTTGGACCTCAATGAGAAAAAGGTCTA CGCCATGGCCAATGACCGTATCTTGCCCGCCACCAAGGTAACAGGCAAGTGGTTGTTTCCAAAAGTGCTTATTGACAGAT GGGTAATGGACTCCTGCCATAGCGGCATGCTCACCGATCGCCTGATTATCACCGGCAGCGATGATCCCCTGTTGTCGATG CTGGTAGCCAGACTCATGGGAAAAGTAGGCAGTCGCGAACTGGTGAGTTACAGCGCCACTGGTTCACGTCTGGGACTGGA ACTGCTCGCCAAGGGTTATGCCGATGTCTGTACCCTGCACTGGGGTAGCTTTGATGAGCGCAACATCCGCCATACCGGGC TGCTAAAAGGCTATCAAAACCACCAGCAATGGATACTGGTCCACGGCTACAAGCGCGCTCAGGGGCTGATAGTGAGGCCG GAGATGCATCACAGGGTGCAGGATCAGACAGAACTCTTTACCCAGCCGCTGCGTTGGGTAAGACGCCAGAATGGTGCAGG CAGCCAGCAGCATCTGGAGCATTGGTTGATGACAAGGGGCATAGCCGCATCTGAGCTGGACGTGCGTTTTACGGCGTTGA GTGAACGGGAGCTGGCGGGCTATATAGCCCGTGAAGACGCCGATATTGGCTTTGGCTGTCAGGCGGTGGCCAGAGAGAGT GGCCTGGCCTTCGTGCCACTGCTGACCGAGTCCTTTGATTTTGTGATGTCGCAGGGCATCTATTTCCGCCGCCAGTTACA ACAACTGCTGGGCATGCTGACCGCCCCCGACACCCGCCAGGTAGCGGCCATGTTGGGCGGTTACGACTTAAGTGGCTCCG GGCAGCTGCTCTGGTCCCAGGGACAGTAA
Upstream 100 bases:
>100_bases TCACCCTCATCGCCAGAGCAAAAGGCCGGCACTTTTTGGTATATCACGGCGCCGAGACCATAGATTTTGATGCAACCCCA GGGAAGACAGGACAAGGATA
Downstream 100 bases:
>100_bases TCAGGTAACAGACTCAAAGCGCCAGGCCAGTATCCGGGTGATTTTTTGCCCCTGCTGCATTTCTATCACCTTGATTTCAC TGGCGCCGCGCTGCTCCAAA
Product: hypothetical protein
Products: NA
Alternate protein names: Molybdenum Cofactor Synthesis Domain-Containing Protein; Molybdate Metabolism Transcriptional Regulator; Molybdenum Cofactor Biosynthesis Protein; Molybdopterin Biosynthesis Protein MoeA; Molybdopterin Biosynthesis MoeA Protein; Molybdopterin Biosynthesis Protein; LysR Family Transcriptional Regulator; Formate Dehydrogenase Regulator; Molybdate Transport Repressor Domain Protein; Molybdopterin Molybdochelatase; Transcriptional Regulator FdsR; Molybdate Metabolism LysR Family Transcription Regulator; Molybdenum Cofactor Biosynthesis
Number of amino acids: Translated: 302; Mature: 301
Protein sequence:
>302_residues MTDEVQLVYMSAKQVAEYLDLNEKKVYAMANDRILPATKVTGKWLFPKVLIDRWVMDSCHSGMLTDRLIITGSDDPLLSM LVARLMGKVGSRELVSYSATGSRLGLELLAKGYADVCTLHWGSFDERNIRHTGLLKGYQNHQQWILVHGYKRAQGLIVRP EMHHRVQDQTELFTQPLRWVRRQNGAGSQQHLEHWLMTRGIAASELDVRFTALSERELAGYIAREDADIGFGCQAVARES GLAFVPLLTESFDFVMSQGIYFRRQLQQLLGMLTAPDTRQVAAMLGGYDLSGSGQLLWSQGQ
Sequences:
>Translated_302_residues MTDEVQLVYMSAKQVAEYLDLNEKKVYAMANDRILPATKVTGKWLFPKVLIDRWVMDSCHSGMLTDRLIITGSDDPLLSM LVARLMGKVGSRELVSYSATGSRLGLELLAKGYADVCTLHWGSFDERNIRHTGLLKGYQNHQQWILVHGYKRAQGLIVRP EMHHRVQDQTELFTQPLRWVRRQNGAGSQQHLEHWLMTRGIAASELDVRFTALSERELAGYIAREDADIGFGCQAVARES GLAFVPLLTESFDFVMSQGIYFRRQLQQLLGMLTAPDTRQVAAMLGGYDLSGSGQLLWSQGQ >Mature_301_residues TDEVQLVYMSAKQVAEYLDLNEKKVYAMANDRILPATKVTGKWLFPKVLIDRWVMDSCHSGMLTDRLIITGSDDPLLSML VARLMGKVGSRELVSYSATGSRLGLELLAKGYADVCTLHWGSFDERNIRHTGLLKGYQNHQQWILVHGYKRAQGLIVRPE MHHRVQDQTELFTQPLRWVRRQNGAGSQQHLEHWLMTRGIAASELDVRFTALSERELAGYIAREDADIGFGCQAVARESG LAFVPLLTESFDFVMSQGIYFRRQLQQLLGMLTAPDTRQVAAMLGGYDLSGSGQLLWSQGQ
Specific function: Unknown
COG id: COG1910
COG function: function code P; Periplasmic molybdate-binding protein/domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34049; Mature: 33917
Theoretical pI: Translated: 7.69; Mature: 7.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDEVQLVYMSAKQVAEYLDLNEKKVYAMANDRILPATKVTGKWLFPKVLIDRWVMDSCH CCCCEEEEEHHHHHHHHHHCCCCCEEEEEECCEECCCCCCCCCHHHHHHHHHHHHHHHHC SGMLTDRLIITGSDDPLLSMLVARLMGKVGSRELVSYSATGSRLGLELLAKGYADVCTLH CCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHEEECCCCHHHHHHHHHCCHHHEEEEE WGSFDERNIRHTGLLKGYQNHQQWILVHGYKRAQGLIVRPEMHHRVQDQTELFTQPLRWV CCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHH RRQNGAGSQQHLEHWLMTRGIAASELDVRFTALSERELAGYIAREDADIGFGCQAVARES HHCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHCCCCCCCCCHHHHHHCC GLAFVPLLTESFDFVMSQGIYFRRQLQQLLGMLTAPDTRQVAAMLGGYDLSGSGQLLWSQ CCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCEEEEC GQ CC >Mature Secondary Structure TDEVQLVYMSAKQVAEYLDLNEKKVYAMANDRILPATKVTGKWLFPKVLIDRWVMDSCH CCCEEEEEHHHHHHHHHHCCCCCEEEEEECCEECCCCCCCCCHHHHHHHHHHHHHHHHC SGMLTDRLIITGSDDPLLSMLVARLMGKVGSRELVSYSATGSRLGLELLAKGYADVCTLH CCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHEEECCCCHHHHHHHHHCCHHHEEEEE WGSFDERNIRHTGLLKGYQNHQQWILVHGYKRAQGLIVRPEMHHRVQDQTELFTQPLRWV CCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHH RRQNGAGSQQHLEHWLMTRGIAASELDVRFTALSERELAGYIAREDADIGFGCQAVARES HHCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHCCCCCCCCCHHHHHHCC GLAFVPLLTESFDFVMSQGIYFRRQLQQLLGMLTAPDTRQVAAMLGGYDLSGSGQLLWSQ CCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCEEEEC GQ CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA