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The map label for this gene is ydiP [H]

Identifier: 119776725

GI number: 119776725

Start: 4224835

End: 4225863

Strand: Reverse

Name: ydiP [H]

Synonym: Sama_3593

Alternate gene names: 119776725

Gene position: 4225863-4224835 (Counterclockwise)

Preceding gene: 119776726

Following gene: 119776724

Centisome position: 98.14

GC content: 57.05

Gene sequence:

>1029_bases
ATGACTCAGACCACTCTCCCCACCCTGAATATCGCAATTCTGATACCCGAGACGCCGGTCATGAGCGGTGTGACGGCCTT
TTTGGATCTGTTTCGTCATGCCAATACCTATGCAGAACGCACCGGCCAATCAGGTGTACCCCATGTGGAACCCAGGGTGT
ATTCGGCCCGGGGAGGCTGGGTGAGCGCCGAAGGAATAGGGATAGAGTCCGTGCCCGTGTCTGCGTTGGACCTGACGCAG
GTCGATGCCTTGGTTATCTCGGCGCCGCTTATTCTGGATGGCCGCGATTTGCATCGCGAACTGGCCAGCTTCAAGGCCTT
TGAAGATCATATCAAGGCATTGGCAGACAATGGCGTGCCCGTTGCTGCTTGCTGCGCCGGCGCTTTCTTATTGGCTGCCA
CCGGACTCCTGGATGGTCGCAAGGCCACAACAGCCTGGTGGCTGGCGCCGTTGTTTGAACAACACTTTCCCGAGGTTAGG
CTGTCGATGGTGTCTTTGGTCGAACGCGATGGTCTGTTTTTTACTGCAGGGGCCTCCACAGCAAGCTACAGCCTGGGACT
GGCTTTGTTAGAGCAGCTGGTGGATGAGCACTTTGCCCAGGCCATGGCCAAAGTCTTTCTAATCGACCCCAACCGCAGCT
CCCAGCGGGTGTTTATGGATCAGGTGCCGCTTCAGCCCCTGCATACCGATCCCCAGGTGGCCGATATCATGCGCTGGATA
AGCAATAACCTCACAGAAGATTTGGCCCTGGAGTCGCTGGCCGAGCGTTTTGCCATGGGTAAGCGCACCCTCATTCGCCG
CTTCAAGGCAGCGCTGCACGACACCCCGTCGAGCTACATACAGAAACTGCGCATAGACAGGGCGAAGCGCTTACTGGAGC
GCACCGATTTACCTCTGGAACGTATCCTGCCTGAGCTCGGGTATGAGGATGTCAGCTCGTTTCGAAAGCTCTTTATCCAA
CATACCAGTCTCACGCCCAAGGCTTACCGGGAGAAGTTTCGCCCCGGCGAGCGTTGTTGCGACCAATAG

Upstream 100 bases:

>100_bases
TCATGGCCTTACCTCCTTGGTGGCGATGAAAAGAGTTTAAAAAAACATCAATAGGCCTTAAAGTGTCGTTAATGACAGTT
TTATGGTTAAAAGTGACATG

Downstream 100 bases:

>100_bases
GGTGGCCTATATCATCCGGCAAGGGGGCAAAAGCATCGGACATATGCCCTAAAGCGGCGGGAAATGGGCATTTCGGCAGG
GTCTTTCCCCCTTTGCACTG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MTQTTLPTLNIAILIPETPVMSGVTAFLDLFRHANTYAERTGQSGVPHVEPRVYSARGGWVSAEGIGIESVPVSALDLTQ
VDALVISAPLILDGRDLHRELASFKAFEDHIKALADNGVPVAACCAGAFLLAATGLLDGRKATTAWWLAPLFEQHFPEVR
LSMVSLVERDGLFFTAGASTASYSLGLALLEQLVDEHFAQAMAKVFLIDPNRSSQRVFMDQVPLQPLHTDPQVADIMRWI
SNNLTEDLALESLAERFAMGKRTLIRRFKAALHDTPSSYIQKLRIDRAKRLLERTDLPLERILPELGYEDVSSFRKLFIQ
HTSLTPKAYREKFRPGERCCDQ

Sequences:

>Translated_342_residues
MTQTTLPTLNIAILIPETPVMSGVTAFLDLFRHANTYAERTGQSGVPHVEPRVYSARGGWVSAEGIGIESVPVSALDLTQ
VDALVISAPLILDGRDLHRELASFKAFEDHIKALADNGVPVAACCAGAFLLAATGLLDGRKATTAWWLAPLFEQHFPEVR
LSMVSLVERDGLFFTAGASTASYSLGLALLEQLVDEHFAQAMAKVFLIDPNRSSQRVFMDQVPLQPLHTDPQVADIMRWI
SNNLTEDLALESLAERFAMGKRTLIRRFKAALHDTPSSYIQKLRIDRAKRLLERTDLPLERILPELGYEDVSSFRKLFIQ
HTSLTPKAYREKFRPGERCCDQ
>Mature_341_residues
TQTTLPTLNIAILIPETPVMSGVTAFLDLFRHANTYAERTGQSGVPHVEPRVYSARGGWVSAEGIGIESVPVSALDLTQV
DALVISAPLILDGRDLHRELASFKAFEDHIKALADNGVPVAACCAGAFLLAATGLLDGRKATTAWWLAPLFEQHFPEVRL
SMVSLVERDGLFFTAGASTASYSLGLALLEQLVDEHFAQAMAKVFLIDPNRSSQRVFMDQVPLQPLHTDPQVADIMRWIS
NNLTEDLALESLAERFAMGKRTLIRRFKAALHDTPSSYIQKLRIDRAKRLLERTDLPLERILPELGYEDVSSFRKLFIQH
TSLTPKAYREKFRPGERCCDQ

Specific function: Unknown

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787987, Length=108, Percent_Identity=30.5555555555556, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38013; Mature: 37882

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQTTLPTLNIAILIPETPVMSGVTAFLDLFRHANTYAERTGQSGVPHVEPRVYSARGGW
CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCE
VSAEGIGIESVPVSALDLTQVDALVISAPLILDGRDLHRELASFKAFEDHIKALADNGVP
EECCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCC
VAACCAGAFLLAATGLLDGRKATTAWWLAPLFEQHFPEVRLSMVSLVERDGLFFTAGAST
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCEEEEECCCH
ASYSLGLALLEQLVDEHFAQAMAKVFLIDPNRSSQRVFMDQVPLQPLHTDPQVADIMRWI
HHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEHHCCCCCCCCCCHHHHHHHHHH
SNNLTEDLALESLAERFAMGKRTLIRRFKAALHDTPSSYIQKLRIDRAKRLLERTDLPLE
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHH
RILPELGYEDVSSFRKLFIQHTSLTPKAYREKFRPGERCCDQ
HHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHCCC
>Mature Secondary Structure 
TQTTLPTLNIAILIPETPVMSGVTAFLDLFRHANTYAERTGQSGVPHVEPRVYSARGGW
CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCE
VSAEGIGIESVPVSALDLTQVDALVISAPLILDGRDLHRELASFKAFEDHIKALADNGVP
EECCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCC
VAACCAGAFLLAATGLLDGRKATTAWWLAPLFEQHFPEVRLSMVSLVERDGLFFTAGAST
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCEEEEECCCH
ASYSLGLALLEQLVDEHFAQAMAKVFLIDPNRSSQRVFMDQVPLQPLHTDPQVADIMRWI
HHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEHHCCCCCCCCCCHHHHHHHHHH
SNNLTEDLALESLAERFAMGKRTLIRRFKAALHDTPSSYIQKLRIDRAKRLLERTDLPLE
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHH
RILPELGYEDVSSFRKLFIQHTSLTPKAYREKFRPGERCCDQ
HHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]