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The map label for this gene is ycaO [H]

Identifier: 119776701

GI number: 119776701

Start: 4203638

End: 4205821

Strand: Direct

Name: ycaO [H]

Synonym: Sama_3569

Alternate gene names: 119776701

Gene position: 4203638-4205821 (Clockwise)

Preceding gene: 119776698

Following gene: 119776707

Centisome position: 97.62

GC content: 55.77

Gene sequence:

>2184_bases
ATGGAAATCAAAGTTAATTTTCTCGATAACCTGAGACTGGAAGCCAAGTTCGACGACTTCACCGTGGTTGCCGACCAACC
CATTCGCTACAAGGGCGATGGCTCGGCCCCCAGTCCGTTCGACTACTTCCTGGCTTCCTCCGCCCTGTGTGCCGCCTACT
TTGTGAAGGTGTACTGCGTGTCGCGGGATATTCCCACCGAAGGTATCCGCCTGTCGCAAAACAACATTGTTGACCCGGAA
AACCGCTACAACCAGCAGTTTAAAATTCAGGTTGAACTACCAGAGAGCATCAGCGACAAAGACCGCGAAGGCATTCTGCG
CTCCATCGACCGCTGCACCGTGAAAAAAGTGGTCCAGACCGGCCCCGAGTTCGTTATCGAAACCGTGGAAAACCTCGACG
AAGACGCCCAGGCCATGCTGATGGTGACGCCCGATGCCGACCACAGCACCTTTATTGTGGGGAAAGACCTGCCGCTGGAG
CAGACCATCGCCAATATGACCGCCAAGCTGGCGGAGCTGGGAATGAAAATTGAAATCTCCAGCTGGCGTAACCTGGTACC
CAACGTCTGGTCACTGCATATCCGTGACGCCGCCTCGCCCATGTGCTTTACCAACGGCAAAGGCGCCACCAAAGAAAGCG
CCCTTTGCTCGGCATTGGGTGAATTTATCGAGCGTCTCAGCTGCAACTTCTTCTATAACGATCAGTATTTTGGTGAAGAA
ATAGCCAATGCTGAGTTCGTGCATTACCCCAATGAAAAGTGGTTCCCGCTGGAGGAAGACGACTCGCTGCCAGCAGGTCT
GTTGGACGAGTATTGCCTCGATATCTACGACAACGATGGCGAGCTGTGCGGCTCTCATCTGGTGGACACCAACTCGGGCA
ACTATGAGCGCGGCATCTGCGCCATCCCTTACATCCGCCACAGCGATGGCGAGACAGTGTATTTCCCGTCCAACCTGATT
GAAAACCTATTCCTCAGCAACGGCATGAGCGCGGGCAACAACCTGGCCGAAGCCAAGGTGCAGTGCCTGTCGGAAATCTT
CGAGCGCGCGGTAAAGCGCCAGATCATCGAAGAAGAAATTGCCCTGCCGGACGTGCCCAAGGACGTGCTGGCCAAGTACC
CTTCCATAGTGGCGGGCATCGACGCGCTGGAGGCCCAGGGCTTCCCGGTGGTGGTGAAAGATGCCTCCCTCGGCGGCCAG
TTCCCGGTGATGTGCGTAACCTTGATGAACCCACGCACCGGCGGCGTATTTGCCTCCTTTGGCGCCCACCCAAGCCTCGA
AGTGGCGCTGGAGCGCAGCCTCACAGAGCTGCTGCAGGGCCGCAGTTTCGAAGGTCTTAACGACGTGCAAAAGCCCACCT
TCAACAGCATGGCGGTGCAGGAGCCAGAGAACTTCGTTGAGCACTTTATCGACTCGACTGGGGTGATCTCCTGGCGCTTC
TTCAGTGCCAAACACGACTATGAGTTCGTGGAGTGGGATTTCTCCGGCACCAATGAAGAAGAATCCACCGCCCTGTTCGG
CATCCTCGAAGATCTGGGTCTTGAGGCCTACATCGCTGAATTCACTGCTCTGGGCAGTGCCTGCCGTATTCTGGTGCCCG
GTTACTCAGAGGTGTATCCGGTCACCGACCTGATTTGGGATAACACCAATAAGGCGCTGGATTTCCGTGAAGATATCCTC
AACCTGCATCGCCTGAGTGACGATGAGCTTGCTGATTTGGTTGAGCGCCTCGAAGAAAGCGAGCTGGATAACTACACCGA
CATCATCACCCTGATTGGTATCGAATTTGATGAAAATACCGTTTGGGGTCAGCTGACTATCCTTGAGCTCAAGCTGCTGT
GCTACCTGGCGCTGGGCGAGCTGGAAGCGGCCCAGGAACTGACCGAGACCTTCCTTCAGTACAACGACAATACGGTAAAA
CGCGGCCTCTTCTATCAGGCCATGTCAGCGGTGCTGGAAATCAGCCTGGATGATGAGCTGGCGCTGGAAGACTACCGCCA
CAACCTCACCCGCATGTTCGGTGAAGAAACCATGGACGCCGTAATCGGCTCGGTGGAAGGTTCGGTGCGTTTCTATGGCC
TCACCCCAACCAGCATGAAACTGGAAGGACTGGACCGTCATCAGCGCTTGATTGAAAGCTATAAGAAGCTGCACGCCGCC
CGCGCCAAACTGGCGGGGCTGTAA

Upstream 100 bases:

>100_bases
ACCCAAGACTAATGGGGCAAAAAAGCCGATAATTGCGCTAATTTTTCAGCGGTTTTGCCGCGGGGCAACTGCATATGCCC
GCAACATCTGGAATTATCCC

Downstream 100 bases:

>100_bases
TTCGTTGTTCTGACATTTTCCGGTCCTGACATTCTCCGCTCCTGCCATAGTCAGGCACTGATTTTACAGGTTACGGAAGC
TAACCGGACATCAAAAAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 727; Mature: 727

Protein sequence:

>727_residues
MEIKVNFLDNLRLEAKFDDFTVVADQPIRYKGDGSAPSPFDYFLASSALCAAYFVKVYCVSRDIPTEGIRLSQNNIVDPE
NRYNQQFKIQVELPESISDKDREGILRSIDRCTVKKVVQTGPEFVIETVENLDEDAQAMLMVTPDADHSTFIVGKDLPLE
QTIANMTAKLAELGMKIEISSWRNLVPNVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLSCNFFYNDQYFGEE
IANAEFVHYPNEKWFPLEEDDSLPAGLLDEYCLDIYDNDGELCGSHLVDTNSGNYERGICAIPYIRHSDGETVYFPSNLI
ENLFLSNGMSAGNNLAEAKVQCLSEIFERAVKRQIIEEEIALPDVPKDVLAKYPSIVAGIDALEAQGFPVVVKDASLGGQ
FPVMCVTLMNPRTGGVFASFGAHPSLEVALERSLTELLQGRSFEGLNDVQKPTFNSMAVQEPENFVEHFIDSTGVISWRF
FSAKHDYEFVEWDFSGTNEEESTALFGILEDLGLEAYIAEFTALGSACRILVPGYSEVYPVTDLIWDNTNKALDFREDIL
NLHRLSDDELADLVERLEESELDNYTDIITLIGIEFDENTVWGQLTILELKLLCYLALGELEAAQELTETFLQYNDNTVK
RGLFYQAMSAVLEISLDDELALEDYRHNLTRMFGEETMDAVIGSVEGSVRFYGLTPTSMKLEGLDRHQRLIESYKKLHAA
RAKLAGL

Sequences:

>Translated_727_residues
MEIKVNFLDNLRLEAKFDDFTVVADQPIRYKGDGSAPSPFDYFLASSALCAAYFVKVYCVSRDIPTEGIRLSQNNIVDPE
NRYNQQFKIQVELPESISDKDREGILRSIDRCTVKKVVQTGPEFVIETVENLDEDAQAMLMVTPDADHSTFIVGKDLPLE
QTIANMTAKLAELGMKIEISSWRNLVPNVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLSCNFFYNDQYFGEE
IANAEFVHYPNEKWFPLEEDDSLPAGLLDEYCLDIYDNDGELCGSHLVDTNSGNYERGICAIPYIRHSDGETVYFPSNLI
ENLFLSNGMSAGNNLAEAKVQCLSEIFERAVKRQIIEEEIALPDVPKDVLAKYPSIVAGIDALEAQGFPVVVKDASLGGQ
FPVMCVTLMNPRTGGVFASFGAHPSLEVALERSLTELLQGRSFEGLNDVQKPTFNSMAVQEPENFVEHFIDSTGVISWRF
FSAKHDYEFVEWDFSGTNEEESTALFGILEDLGLEAYIAEFTALGSACRILVPGYSEVYPVTDLIWDNTNKALDFREDIL
NLHRLSDDELADLVERLEESELDNYTDIITLIGIEFDENTVWGQLTILELKLLCYLALGELEAAQELTETFLQYNDNTVK
RGLFYQAMSAVLEISLDDELALEDYRHNLTRMFGEETMDAVIGSVEGSVRFYGLTPTSMKLEGLDRHQRLIESYKKLHAA
RAKLAGL
>Mature_727_residues
MEIKVNFLDNLRLEAKFDDFTVVADQPIRYKGDGSAPSPFDYFLASSALCAAYFVKVYCVSRDIPTEGIRLSQNNIVDPE
NRYNQQFKIQVELPESISDKDREGILRSIDRCTVKKVVQTGPEFVIETVENLDEDAQAMLMVTPDADHSTFIVGKDLPLE
QTIANMTAKLAELGMKIEISSWRNLVPNVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLSCNFFYNDQYFGEE
IANAEFVHYPNEKWFPLEEDDSLPAGLLDEYCLDIYDNDGELCGSHLVDTNSGNYERGICAIPYIRHSDGETVYFPSNLI
ENLFLSNGMSAGNNLAEAKVQCLSEIFERAVKRQIIEEEIALPDVPKDVLAKYPSIVAGIDALEAQGFPVVVKDASLGGQ
FPVMCVTLMNPRTGGVFASFGAHPSLEVALERSLTELLQGRSFEGLNDVQKPTFNSMAVQEPENFVEHFIDSTGVISWRF
FSAKHDYEFVEWDFSGTNEEESTALFGILEDLGLEAYIAEFTALGSACRILVPGYSEVYPVTDLIWDNTNKALDFREDIL
NLHRLSDDELADLVERLEESELDNYTDIITLIGIEFDENTVWGQLTILELKLLCYLALGELEAAQELTETFLQYNDNTVK
RGLFYQAMSAVLEISLDDELALEDYRHNLTRMFGEETMDAVIGSVEGSVRFYGLTPTSMKLEGLDRHQRLIESYKKLHAA
RAKLAGL

Specific function: Unknown

COG id: COG1944

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0142 family [H]

Homologues:

Organism=Escherichia coli, GI87081799, Length=580, Percent_Identity=48.2758620689655, Blast_Score=553, Evalue=1e-158,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003776 [H]

Pfam domain/function: PF02624 YcaO [H]

EC number: NA

Molecular weight: Translated: 81564; Mature: 81564

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIKVNFLDNLRLEAKFDDFTVVADQPIRYKGDGSAPSPFDYFLASSALCAAYFVKVYCV
CEEEEEEHHCCEEEEECCCEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
SRDIPTEGIRLSQNNIVDPENRYNQQFKIQVELPESISDKDREGILRSIDRCTVKKVVQT
CCCCCCCCEEECCCCCCCCHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHC
GPEFVIETVENLDEDAQAMLMVTPDADHSTFIVGKDLPLEQTIANMTAKLAELGMKIEIS
CHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEH
SWRNLVPNVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLSCNFFYNDQYFGEE
HHHCCCCCHHEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCCHHHHH
IANAEFVHYPNEKWFPLEEDDSLPAGLLDEYCLDIYDNDGELCGSHLVDTNSGNYERGIC
HCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHCCCCEEECCCCCCCCCEE
AIPYIRHSDGETVYFPSNLIENLFLSNGMSAGNNLAEAKVQCLSEIFERAVKRQIIEEEI
EECEEECCCCCEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
ALPDVPKDVLAKYPSIVAGIDALEAQGFPVVVKDASLGGQFPVMCVTLMNPRTGGVFASF
CCCCCCHHHHHHCCHHHHCCHHHHCCCCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEC
GAHPSLEVALERSLTELLQGRSFEGLNDVQKPTFNSMAVQEPENFVEHFIDSTGVISWRF
CCCCCHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEE
FSAKHDYEFVEWDFSGTNEEESTALFGILEDLGLEAYIAEFTALGSACRILVPGYSEVYP
ECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCEEEECCCCCCCC
VTDLIWDNTNKALDFREDILNLHRLSDDELADLVERLEESELDNYTDIITLIGIEFDENT
CHHHEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHEEEEEEEEEECCCC
VWGQLTILELKLLCYLALGELEAAQELTETFLQYNDNTVKRGLFYQAMSAVLEISLDDEL
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCCCHH
ALEDYRHNLTRMFGEETMDAVIGSVEGSVRFYGLTPTSMKLEGLDRHQRLIESYKKLHAA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCHHHHHHHHHHHHHHHH
RAKLAGL
HHHHCCC
>Mature Secondary Structure
MEIKVNFLDNLRLEAKFDDFTVVADQPIRYKGDGSAPSPFDYFLASSALCAAYFVKVYCV
CEEEEEEHHCCEEEEECCCEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
SRDIPTEGIRLSQNNIVDPENRYNQQFKIQVELPESISDKDREGILRSIDRCTVKKVVQT
CCCCCCCCEEECCCCCCCCHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHC
GPEFVIETVENLDEDAQAMLMVTPDADHSTFIVGKDLPLEQTIANMTAKLAELGMKIEIS
CHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEH
SWRNLVPNVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLSCNFFYNDQYFGEE
HHHCCCCCHHEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCCHHHHH
IANAEFVHYPNEKWFPLEEDDSLPAGLLDEYCLDIYDNDGELCGSHLVDTNSGNYERGIC
HCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHCCCCEEECCCCCCCCCEE
AIPYIRHSDGETVYFPSNLIENLFLSNGMSAGNNLAEAKVQCLSEIFERAVKRQIIEEEI
EECEEECCCCCEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
ALPDVPKDVLAKYPSIVAGIDALEAQGFPVVVKDASLGGQFPVMCVTLMNPRTGGVFASF
CCCCCCHHHHHHCCHHHHCCHHHHCCCCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEC
GAHPSLEVALERSLTELLQGRSFEGLNDVQKPTFNSMAVQEPENFVEHFIDSTGVISWRF
CCCCCHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEE
FSAKHDYEFVEWDFSGTNEEESTALFGILEDLGLEAYIAEFTALGSACRILVPGYSEVYP
ECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCEEEECCCCCCCC
VTDLIWDNTNKALDFREDILNLHRLSDDELADLVERLEESELDNYTDIITLIGIEFDENT
CHHHEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHEEEEEEEEEECCCC
VWGQLTILELKLLCYLALGELEAAQELTETFLQYNDNTVKRGLFYQAMSAVLEISLDDEL
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCCCHH
ALEDYRHNLTRMFGEETMDAVIGSVEGSVRFYGLTPTSMKLEGLDRHQRLIESYKKLHAA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCHHHHHHHHHHHHHHHH
RAKLAGL
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]