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The map label for this gene is pecS [H]

Identifier: 119776698

GI number: 119776698

Start: 4200761

End: 4201255

Strand: Direct

Name: pecS [H]

Synonym: Sama_3566

Alternate gene names: 119776698

Gene position: 4200761-4201255 (Clockwise)

Preceding gene: 119776696

Following gene: 119776701

Centisome position: 97.55

GC content: 51.11

Gene sequence:

>495_bases
ATGAGATTTTACATGGACGCCGTAGATAAAATTCTGGCGCAGTGGGCAAAAGAGAAACCCGACATGGATACCCTTTCAAT
GGGTATCATGGGTCGCCTGGCAAGACTCACCAAACATCTGGAGCAGGAAATTACGCTTTGCCACAAAGCATATGGCCTCA
AACCCGGCGAGTTTGATGTACTTGCCACCTTGAGAAGAAGCGGCGCTCCCTATCGACTAACACCATCGGATTTGCTGTCT
GCCATGATGCTCACATCCGGGGCCATGACCAACAGACTCGACCGCTTGGAGGCCAAAGGTTTTATTGCCCGTGAGCACTG
TCAGAAGGACAGACGCAGTGTCGAAGTTTGTCTGACTCCCAAGGGAATTTCAACCCTGGCGCAGGTACTCTCGCGTCATG
TCGAGACGCAAAATAGGGTACTGTCCAAATTGGGGCGGGATGAGCAACTGCTCCTCAGCCGACTATTGAAAGACTGGCTT
GCTCATTTTGAGTAA

Upstream 100 bases:

>100_bases
CATGCAAAGTATCTTTATATTGAGATTGTTTTCAGGCTAACGCAGAAAAAACTTCTCGTAAAGTATCTTTATGCTAAGAT
AATTTTATATCGATGAAAGT

Downstream 100 bases:

>100_bases
ATCTTGTCGGGAGCCACTTTGACGACTCAGACTCCCTGCTGTCCTGTAACTGTTCGTTGCTTTGCGCGCTTAAGTCCGCA
TGACCTGACTTAAAAGCAGC

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MRFYMDAVDKILAQWAKEKPDMDTLSMGIMGRLARLTKHLEQEITLCHKAYGLKPGEFDVLATLRRSGAPYRLTPSDLLS
AMMLTSGAMTNRLDRLEAKGFIAREHCQKDRRSVEVCLTPKGISTLAQVLSRHVETQNRVLSKLGRDEQLLLSRLLKDWL
AHFE

Sequences:

>Translated_164_residues
MRFYMDAVDKILAQWAKEKPDMDTLSMGIMGRLARLTKHLEQEITLCHKAYGLKPGEFDVLATLRRSGAPYRLTPSDLLS
AMMLTSGAMTNRLDRLEAKGFIAREHCQKDRRSVEVCLTPKGISTLAQVLSRHVETQNRVLSKLGRDEQLLLSRLLKDWL
AHFE
>Mature_164_residues
MRFYMDAVDKILAQWAKEKPDMDTLSMGIMGRLARLTKHLEQEITLCHKAYGLKPGEFDVLATLRRSGAPYRLTPSDLLS
AMMLTSGAMTNRLDRLEAKGFIAREHCQKDRRSVEVCLTPKGISTLAQVLSRHVETQNRVLSKLGRDEQLLLSRLLKDWL
AHFE

Specific function: Negative regulator of pectinase, cellulase, blue pigment production and virulence genes. Also binds to promoter sites in the pecS-pecM intergenic region and negatively autoregulate its expression as well as that of pecM [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18712; Mature: 18712

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFYMDAVDKILAQWAKEKPDMDTLSMGIMGRLARLTKHLEQEITLCHKAYGLKPGEFDV
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LATLRRSGAPYRLTPSDLLSAMMLTSGAMTNRLDRLEAKGFIAREHCQKDRRSVEVCLTP
HHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEHEECC
KGISTLAQVLSRHVETQNRVLSKLGRDEQLLLSRLLKDWLAHFE
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRFYMDAVDKILAQWAKEKPDMDTLSMGIMGRLARLTKHLEQEITLCHKAYGLKPGEFDV
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LATLRRSGAPYRLTPSDLLSAMMLTSGAMTNRLDRLEAKGFIAREHCQKDRRSVEVCLTP
HHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEHEECC
KGISTLAQVLSRHVETQNRVLSKLGRDEQLLLSRLLKDWLAHFE
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8022282; 9194707 [H]