| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776693
Identifier: 119776693
GI number: 119776693
Start: 4196242
End: 4197258
Strand: Direct
Name: 119776693
Synonym: Sama_3561
Alternate gene names: NA
Gene position: 4196242-4197258 (Clockwise)
Preceding gene: 119776692
Following gene: 119776694
Centisome position: 97.45
GC content: 52.9
Gene sequence:
>1017_bases ATGAACATGCTCTCATTTCTGTTCGGTGCGCCCATCAGGGCGCAGCGGGCAGCCACAGGGCTTAAGGCACACAGAGACGA TCTGCCCCGCCTGCAGGCCTATTACGATGCCGAAATCGCCCCCCTCAGCCGTAAATTTGAAAACCAACGCATCAGGGCGC TGAAACAAGCACGGCAACGCATCTATCTTGGGCTGGGTGTATTCGTTGCACTGCTCATCGCCTCTCTGCCGCTGATAAAA CCCGGCGCCCAGTTTGTGCCCTTCAGCTGGATTGCTGCCGCAGGCATCGCCTTTTTAATCTGGCGCTGGGCCAGCTCGCC GATGCGCCAATATACCGGGGCGGTACAAAGTGAAATTTACCCGAGGATATTTCGGTTTTTCGGCCCTGACTTTGTGTTCG CCAAGGGGCAGGACATGGGGATCCGTATGTTTAAAGAGGCCAAAATTTTGCCCTCTTATGACAAGGCCCGCTTCGATGAC TGTGTGCTTGGCAGCTATCTGGGGGTCAGCATCGGCATCAACGAAGTGCATTTGCTGAGGGAACAAAGGGACAAGGATAA AAACCGAGACGTGACTGTGTTTCGCGGCTTATTTATCTCACTCTCCAGTCACAAAGCCTTCAGGGGCCATACGGTGGCCA TTCGCTCCCGGGGTTCTTTGACCAATTTTTTCTCTGACAGCCATGGCGGACTGGAACGGGTGCACCTGGAAGACCCGCAG TTTGAAAAAATGTTCGATGTGTTTTCAACGGATCAGATTGAAGCACGGGTGCTGTTGACCACCGCCTTTATGGAACGACT TATGGCACTGGCGCAGTTTTTCTCCAGCCGGATCCAGTGTGCATTCCACCGTGATCGCCTGCTTATCACCATAGAGAGCA GCCAAAACCGCTTCGAGCAGTCGTCTATTTTCAGCGCCGCCACCTTTGAAGACGAATTCAGCCGGATCCACGGCGAAATG AAGCAACTCTTTGCTATCATAGAATTACTTAAGCTTAACGAGTACACAGGTCTCTAA
Upstream 100 bases:
>100_bases CTGATTGCCAACATGGCATCGGTTAAAGCCATGCCGTTTTTTGAAGCTCAGGAAGCCGACAGGGCACCGGTAAACGCCAG CGACTACCTGAAGTAACCCT
Downstream 100 bases:
>100_bases TGTCATTTCGCTGGTCGCTGTTTTCCCTGCTTTTAGTTGCTATCGCCGGCACCAGCGCCGGTGCTTCTGATACTCAGTCA TCCAGCGCAGAGAAGCCCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 338; Mature: 338
Protein sequence:
>338_residues MNMLSFLFGAPIRAQRAATGLKAHRDDLPRLQAYYDAEIAPLSRKFENQRIRALKQARQRIYLGLGVFVALLIASLPLIK PGAQFVPFSWIAAAGIAFLIWRWASSPMRQYTGAVQSEIYPRIFRFFGPDFVFAKGQDMGIRMFKEAKILPSYDKARFDD CVLGSYLGVSIGINEVHLLREQRDKDKNRDVTVFRGLFISLSSHKAFRGHTVAIRSRGSLTNFFSDSHGGLERVHLEDPQ FEKMFDVFSTDQIEARVLLTTAFMERLMALAQFFSSRIQCAFHRDRLLITIESSQNRFEQSSIFSAATFEDEFSRIHGEM KQLFAIIELLKLNEYTGL
Sequences:
>Translated_338_residues MNMLSFLFGAPIRAQRAATGLKAHRDDLPRLQAYYDAEIAPLSRKFENQRIRALKQARQRIYLGLGVFVALLIASLPLIK PGAQFVPFSWIAAAGIAFLIWRWASSPMRQYTGAVQSEIYPRIFRFFGPDFVFAKGQDMGIRMFKEAKILPSYDKARFDD CVLGSYLGVSIGINEVHLLREQRDKDKNRDVTVFRGLFISLSSHKAFRGHTVAIRSRGSLTNFFSDSHGGLERVHLEDPQ FEKMFDVFSTDQIEARVLLTTAFMERLMALAQFFSSRIQCAFHRDRLLITIESSQNRFEQSSIFSAATFEDEFSRIHGEM KQLFAIIELLKLNEYTGL >Mature_338_residues MNMLSFLFGAPIRAQRAATGLKAHRDDLPRLQAYYDAEIAPLSRKFENQRIRALKQARQRIYLGLGVFVALLIASLPLIK PGAQFVPFSWIAAAGIAFLIWRWASSPMRQYTGAVQSEIYPRIFRFFGPDFVFAKGQDMGIRMFKEAKILPSYDKARFDD CVLGSYLGVSIGINEVHLLREQRDKDKNRDVTVFRGLFISLSSHKAFRGHTVAIRSRGSLTNFFSDSHGGLERVHLEDPQ FEKMFDVFSTDQIEARVLLTTAFMERLMALAQFFSSRIQCAFHRDRLLITIESSQNRFEQSSIFSAATFEDEFSRIHGEM KQLFAIIELLKLNEYTGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38704; Mature: 38704
Theoretical pI: Translated: 10.06; Mature: 10.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNMLSFLFGAPIRAQRAATGLKAHRDDLPRLQAYYDAEIAPLSRKFENQRIRALKQARQR CCHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH IYLGLGVFVALLIASLPLIKPGAQFVPFSWIAAAGIAFLIWRWASSPMRQYTGAVQSEIY HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH PRIFRFFGPDFVFAKGQDMGIRMFKEAKILPSYDKARFDDCVLGSYLGVSIGINEVHLLR HHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCHHCCCHHHHHHHHCEECCCHHHHHHH EQRDKDKNRDVTVFRGLFISLSSHKAFRGHTVAIRSRGSLTNFFSDSHGGLERVHLEDPQ HHHCCCCCCCEEEEHHHHHEECCCCCCCCCEEEEECCCCHHHHHCCCCCCCEEEECCCCH FEKMFDVFSTDQIEARVLLTTAFMERLMALAQFFSSRIQCAFHRDRLLITIESSQNRFEQ HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEEEEEECCCCHHHH SSIFSAATFEDEFSRIHGEMKQLFAIIELLKLNEYTGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MNMLSFLFGAPIRAQRAATGLKAHRDDLPRLQAYYDAEIAPLSRKFENQRIRALKQARQR CCHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH IYLGLGVFVALLIASLPLIKPGAQFVPFSWIAAAGIAFLIWRWASSPMRQYTGAVQSEIY HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH PRIFRFFGPDFVFAKGQDMGIRMFKEAKILPSYDKARFDDCVLGSYLGVSIGINEVHLLR HHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCHHCCCHHHHHHHHCEECCCHHHHHHH EQRDKDKNRDVTVFRGLFISLSSHKAFRGHTVAIRSRGSLTNFFSDSHGGLERVHLEDPQ HHHCCCCCCCEEEEHHHHHEECCCCCCCCCEEEEECCCCHHHHHCCCCCCCEEEECCCCH FEKMFDVFSTDQIEARVLLTTAFMERLMALAQFFSSRIQCAFHRDRLLITIESSQNRFEQ HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEEEEEECCCCHHHH SSIFSAATFEDEFSRIHGEMKQLFAIIELLKLNEYTGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA