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The map label for this gene is yomI [H]

Identifier: 119776694

GI number: 119776694

Start: 4197258

End: 4197938

Strand: Direct

Name: yomI [H]

Synonym: Sama_3562

Alternate gene names: 119776694

Gene position: 4197258-4197938 (Clockwise)

Preceding gene: 119776693

Following gene: 119776696

Centisome position: 97.47

GC content: 53.74

Gene sequence:

>681_bases
ATGTCATTTCGCTGGTCGCTGTTTTCCCTGCTTTTAGTTGCTATCGCCGGCACCAGCGCCGGTGCTTCTGATACTCAGTC
ATCCAGCGCAGAGAAGCCCCGCATTACCGCGCGCTACTCCGAAAATGGCACCAGCACCCAAACCAAGGTATATCAGTATG
TTCAGCCCAATGGCACTGTGGCATTCAGCGACAAGGCCCCTGTCAGTGGCAAGTATGAAATCCTGCTGTTTGACTGTTAT
GCCTGTAATCCCAAGTCCAAGGTTAATTGGCGCACCATTCGTTTGAATCGCAGTTACGAGAAAGACATTTTACTGGCTGC
CAAAACCTACTCGCTGGAACCGGCGCTGATACGAGCCGTAATCCACGCCGAGTCCAACTTTAATCCCAAGGCGATTTCCC
GCACCGGCGCCGTGGGACTGATGCAACTGATGCCGGGCACAGCCAAGGACATGGGCGTGCGTAACTCTTTCCTGCCCCAG
GACAATATTCTGGGTGGCAGCCGTTATCTGTCGCAGATGCTGGACCGATTCCAGGGGGATTTAAATCATGCCCTCGCCGC
CTATAACGCCGGGCCTACCCGGGTTGAGGAATACAGTGGTATCCCCCCTTATCCAGAGACCAAAGCCTACATAGAACGGG
TCAATATTCTCCTGCAGCGCTATCGCAATTTACGCACTTGA

Upstream 100 bases:

>100_bases
CCGCCACCTTTGAAGACGAATTCAGCCGGATCCACGGCGAAATGAAGCAACTCTTTGCTATCATAGAATTACTTAAGCTT
AACGAGTACACAGGTCTCTA

Downstream 100 bases:

>100_bases
GGAGCTTGACCCGCGGTAAAAGGTCCATGGAAGTATTCCCATCCAAGACCTGCGGCCAATAAAAAACGGGCAATAAGCCC
GTTTTTTATTGGAATCGACG

Product: transglycosylase SLT domain-containing protein

Products: N-Acetylmuramic Acid Residues; N-Acetylglucosamine Residues [C]

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MSFRWSLFSLLLVAIAGTSAGASDTQSSSAEKPRITARYSENGTSTQTKVYQYVQPNGTVAFSDKAPVSGKYEILLFDCY
ACNPKSKVNWRTIRLNRSYEKDILLAAKTYSLEPALIRAVIHAESNFNPKAISRTGAVGLMQLMPGTAKDMGVRNSFLPQ
DNILGGSRYLSQMLDRFQGDLNHALAAYNAGPTRVEEYSGIPPYPETKAYIERVNILLQRYRNLRT

Sequences:

>Translated_226_residues
MSFRWSLFSLLLVAIAGTSAGASDTQSSSAEKPRITARYSENGTSTQTKVYQYVQPNGTVAFSDKAPVSGKYEILLFDCY
ACNPKSKVNWRTIRLNRSYEKDILLAAKTYSLEPALIRAVIHAESNFNPKAISRTGAVGLMQLMPGTAKDMGVRNSFLPQ
DNILGGSRYLSQMLDRFQGDLNHALAAYNAGPTRVEEYSGIPPYPETKAYIERVNILLQRYRNLRT
>Mature_225_residues
SFRWSLFSLLLVAIAGTSAGASDTQSSSAEKPRITARYSENGTSTQTKVYQYVQPNGTVAFSDKAPVSGKYEILLFDCYA
CNPKSKVNWRTIRLNRSYEKDILLAAKTYSLEPALIRAVIHAESNFNPKAISRTGAVGLMQLMPGTAKDMGVRNSFLPQD
NILGGSRYLSQMLDRFQGDLNHALAAYNAGPTRVEEYSGIPPYPETKAYIERVNILLQRYRNLRT

Specific function: Murein-Degrading Enzyme. May Play A Role In Recycling Of Muropeptides During Cell Elongation And/Or Cell Division (By Similarity). [C]

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 10 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR008258
- InterPro:   IPR016047
- InterPro:   IPR010090
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01551 Peptidase_M23; PF10145 PhageMin_Tail; PF01464 SLT [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 25146; Mature: 25015

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS00922 TRANSGLYCOSYLASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFRWSLFSLLLVAIAGTSAGASDTQSSSAEKPRITARYSENGTSTQTKVYQYVQPNGTV
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHEEEEEECCCCCE
AFSDKAPVSGKYEILLFDCYACNPKSKVNWRTIRLNRSYEKDILLAAKTYSLEPALIRAV
EECCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCCCCHHHHHHH
IHAESNFNPKAISRTGAVGLMQLMPGTAKDMGVRNSFLPQDNILGGSRYLSQMLDRFQGD
HHHCCCCCHHHHHHCCCHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LNHALAAYNAGPTRVEEYSGIPPYPETKAYIERVNILLQRYRNLRT
HHHHHHHCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SFRWSLFSLLLVAIAGTSAGASDTQSSSAEKPRITARYSENGTSTQTKVYQYVQPNGTV
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHEEEEEECCCCCE
AFSDKAPVSGKYEILLFDCYACNPKSKVNWRTIRLNRSYEKDILLAAKTYSLEPALIRAV
EECCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCCCCHHHHHHH
IHAESNFNPKAISRTGAVGLMQLMPGTAKDMGVRNSFLPQDNILGGSRYLSQMLDRFQGD
HHHCCCCCHHHHHHCCCHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LNHALAAYNAGPTRVEEYSGIPPYPETKAYIERVNILLQRYRNLRT
HHHHHHHCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Muramic Acid [C]

Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]

General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]