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The map label for this gene is hlyB [H]

Identifier: 119776654

GI number: 119776654

Start: 4155111

End: 4157021

Strand: Reverse

Name: hlyB [H]

Synonym: Sama_3522

Alternate gene names: 119776654

Gene position: 4157021-4155111 (Counterclockwise)

Preceding gene: 119776655

Following gene: 119776653

Centisome position: 96.54

GC content: 55.94

Gene sequence:

>1911_bases
ATGAACTTAAACATGCTTACCATCAAACAAAAGATTTTGCTTACCGTTTCACTGGCGGTAATCCTTTCCACCGTCGCGGT
TGGGCTATTGGGGCAGCACAGCGCCAGAGACGTGGTAGAGCAGCGGATGCTGGGCTCGGAAATGCCTGCCAAAATGCTGA
GTATCCGCAACGAGCTTGAAAAAGACATGGTAAGCCTGCTTAACGCTGCCAAGCAGCTGGCCGACAGCCGTATGTTGGGC
AAATGGCTGGAGCAGGGCCGTCCTGCAGAAGATGAGTCCCGAGTGGTGAGCCAGTTGCAGGACGTCGCCAGCCAATACCA
GCTGGCACAGGCCTCCTATGCCGACCGTGAAACCGGTGCCTACTACACCCAGAGTGGCTTTTTACGCATTTTGACCCCGG
AGCAGGATGGCTGGTTTTTCGATTACCGCAGCAGTGGTGTGCAACAACGTTTGAATGTATTTACCGAAGCCAACGGTGAT
GTGAAGCTGTTTATCAACTATCAGCAGCTCAATGGTCGCGGCCTTGCGGGGCTGGCCAAGTCGCTGGATGCCATGGTTCA
GCGGCTCACGTCTTTTAAGCTGGAAGAATCTGGCTTTGTCTATCTGGTCGATGCCAAGGGTGAAGTGCAGCTTCACTCAG
ATCCTGGCAAAATTCGTAAAGCCACCCTCAACTCCTTGTATGGTAAAAGCGGCAGCTTGTTGTCCAGGGCCGATTTCAAC
TACATGGAAGTGGAAGTGGACGGCCAGCCTATGATGGTGGCCAGCAGCTATTTGCCCTCCATCGATTGGTACCTGGTGGC
CCAGGTGCCCGAGGCCGAAGTGTTCGCCCTGCTGGATGAAGCCGCGCTGAAAATTCTATTTTCTACCTTGTTGATTGCGC
TCGCCTTTGTGGTGTTGTCTGGCTTTGTGGCGTCCAGTGTCAGTAAGCCTATCGCCGCCGTGGCACGTATGTTCCGTGAC
ATAGGTGAAGGCGAGGGGGACTTGCGTCAGCGTTTGCCGGTGCAGGGTGAAGATGAATTGGCGCAGCTGGCCAGTGGCTT
TAACAGCTTTATCAGTAAAATCCAGGACTCTGTGATTGAAGTGGCCCAAACCAGCGAGCAGCTCGGCAAATCGGCCATCG
ATGTGTCGCGCCAGGCGCAGCAAACACTGGAAGACAGTCAGGACCAGAAAGATCGCACCATGCAGGTGGTGACCGCCATC
AATGAGATGGGCGCCACTGTGAACGAGATTGCAGCGAATGCAGCCCAGGCAGCTGAAGCGGCCAAGGACGCCGACCGGGC
CTCTGGCTCGGGTCAGAAGGTGGTGACCCAGGCTCGGGATACCATCAATCAGCTCTCCAAAGATGTGTCTCAGGTGGGTG
AAGTAATTGAGTCCCTGGCCACCCACACCAAGTCCATCGGCAGTATTCTGGACGTGATTCGCGCGATTTCAGAGCAAACC
AACCTGTTGGCGCTCAACGCTGCCATTGAGGCGGCCCGTGCAGGGGAAGCCGGTCGTGGATTTGCCGTGGTGGCCGACGA
AGTGCGTAATCTGGCATCGCGCACAGCAGCCTCCACCGATGAAGTACAGGTGATGATAGACAAGCTGCAATCTGAATCCG
CCAGGGCTGTCAATGCCATGTCCCAGAGCCGCAGCCGCTCCCAGGAAGGGGTGTCGGCGGTGGATGAAGCCAGCAATACC
CTGAGCGGCATTTCCGATCAGATTGGGCTTATCAGCGACATGAATATTCAGGTGGCCGCCGCGACCGAAGAGCAGTCGAC
CGTCGTGGAGGATATTAACCGCAATGTGACCGAGATTAACGATATCACCCAGCGCACCGCTGCAACGGCACAGGCAGCTG
CCCGAGCCAGTAAAGATCTTAATGCCCTTGCCACTCGCCTCGATCAGCTGGTGGCCCGCTTTAAGGTGTAA

Upstream 100 bases:

>100_bases
ATGCATTATTTCTGAACCGAGCGGAAAAAACGCTTATTAGGGTCAATACTGCATAGGGAGAATTTGTACCTATTTCCTCA
GCTTCAGGAAGAATAAGGCA

Downstream 100 bases:

>100_bases
ACCATCGCTGGGCCGGGCTCGCAGCGCTGGACACAAGCGCTTGCGACCCGGGCCAGAGTGGCGTAACCTGCCCGGGTCTA
CTGCAATTATCGGTGCCCTG

Product: putative methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 636; Mature: 636

Protein sequence:

>636_residues
MNLNMLTIKQKILLTVSLAVILSTVAVGLLGQHSARDVVEQRMLGSEMPAKMLSIRNELEKDMVSLLNAAKQLADSRMLG
KWLEQGRPAEDESRVVSQLQDVASQYQLAQASYADRETGAYYTQSGFLRILTPEQDGWFFDYRSSGVQQRLNVFTEANGD
VKLFINYQQLNGRGLAGLAKSLDAMVQRLTSFKLEESGFVYLVDAKGEVQLHSDPGKIRKATLNSLYGKSGSLLSRADFN
YMEVEVDGQPMMVASSYLPSIDWYLVAQVPEAEVFALLDEAALKILFSTLLIALAFVVLSGFVASSVSKPIAAVARMFRD
IGEGEGDLRQRLPVQGEDELAQLASGFNSFISKIQDSVIEVAQTSEQLGKSAIDVSRQAQQTLEDSQDQKDRTMQVVTAI
NEMGATVNEIAANAAQAAEAAKDADRASGSGQKVVTQARDTINQLSKDVSQVGEVIESLATHTKSIGSILDVIRAISEQT
NLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTDEVQVMIDKLQSESARAVNAMSQSRSRSQEGVSAVDEASNT
LSGISDQIGLISDMNIQVAAATEEQSTVVEDINRNVTEINDITQRTAATAQAAARASKDLNALATRLDQLVARFKV

Sequences:

>Translated_636_residues
MNLNMLTIKQKILLTVSLAVILSTVAVGLLGQHSARDVVEQRMLGSEMPAKMLSIRNELEKDMVSLLNAAKQLADSRMLG
KWLEQGRPAEDESRVVSQLQDVASQYQLAQASYADRETGAYYTQSGFLRILTPEQDGWFFDYRSSGVQQRLNVFTEANGD
VKLFINYQQLNGRGLAGLAKSLDAMVQRLTSFKLEESGFVYLVDAKGEVQLHSDPGKIRKATLNSLYGKSGSLLSRADFN
YMEVEVDGQPMMVASSYLPSIDWYLVAQVPEAEVFALLDEAALKILFSTLLIALAFVVLSGFVASSVSKPIAAVARMFRD
IGEGEGDLRQRLPVQGEDELAQLASGFNSFISKIQDSVIEVAQTSEQLGKSAIDVSRQAQQTLEDSQDQKDRTMQVVTAI
NEMGATVNEIAANAAQAAEAAKDADRASGSGQKVVTQARDTINQLSKDVSQVGEVIESLATHTKSIGSILDVIRAISEQT
NLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTDEVQVMIDKLQSESARAVNAMSQSRSRSQEGVSAVDEASNT
LSGISDQIGLISDMNIQVAAATEEQSTVVEDINRNVTEINDITQRTAATAQAAARASKDLNALATRLDQLVARFKV
>Mature_636_residues
MNLNMLTIKQKILLTVSLAVILSTVAVGLLGQHSARDVVEQRMLGSEMPAKMLSIRNELEKDMVSLLNAAKQLADSRMLG
KWLEQGRPAEDESRVVSQLQDVASQYQLAQASYADRETGAYYTQSGFLRILTPEQDGWFFDYRSSGVQQRLNVFTEANGD
VKLFINYQQLNGRGLAGLAKSLDAMVQRLTSFKLEESGFVYLVDAKGEVQLHSDPGKIRKATLNSLYGKSGSLLSRADFN
YMEVEVDGQPMMVASSYLPSIDWYLVAQVPEAEVFALLDEAALKILFSTLLIALAFVVLSGFVASSVSKPIAAVARMFRD
IGEGEGDLRQRLPVQGEDELAQLASGFNSFISKIQDSVIEVAQTSEQLGKSAIDVSRQAQQTLEDSQDQKDRTMQVVTAI
NEMGATVNEIAANAAQAAEAAKDADRASGSGQKVVTQARDTINQLSKDVSQVGEVIESLATHTKSIGSILDVIRAISEQT
NLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTDEVQVMIDKLQSESARAVNAMSQSRSRSQEGVSAVDEASNT
LSGISDQIGLISDMNIQVAAATEEQSTVVEDINRNVTEINDITQRTAATAQAAARASKDLNALATRLDQLVARFKV

Specific function: May form a pore through which the hemolysin can be exported [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788194, Length=354, Percent_Identity=29.3785310734463, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI1788195, Length=327, Percent_Identity=32.1100917431193, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI1789453, Length=353, Percent_Identity=30.3116147308782, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI2367378, Length=357, Percent_Identity=31.3725490196078, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1787690, Length=353, Percent_Identity=30.028328611898, Blast_Score=126, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR000727 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 68688; Mature: 68688

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2 ; PS50192 T_SNARE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLNMLTIKQKILLTVSLAVILSTVAVGLLGQHSARDVVEQRMLGSEMPAKMLSIRNELE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
KDMVSLLNAAKQLADSRMLGKWLEQGRPAEDESRVVSQLQDVASQYQLAQASYADRETGA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
YYTQSGFLRILTPEQDGWFFDYRSSGVQQRLNVFTEANGDVKLFINYQQLNGRGLAGLAK
EEECCCEEEEECCCCCCCEEEHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHH
SLDAMVQRLTSFKLEESGFVYLVDAKGEVQLHSDPGKIRKATLNSLYGKSGSLLSRADFN
HHHHHHHHHHHCCCCCCCEEEEEECCCCEEEECCCHHHHHHHHHHHHCCCCCCHHHCCCC
YMEVEVDGQPMMVASSYLPSIDWYLVAQVPEAEVFALLDEAALKILFSTLLIALAFVVLS
EEEEEECCCCEEEHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFVASSVSKPIAAVARMFRDIGEGEGDLRQRLPVQGEDELAQLASGFNSFISKIQDSVIE
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VAQTSEQLGKSAIDVSRQAQQTLEDSQDQKDRTMQVVTAINEMGATVNEIAANAAQAAEA
HHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
AKDADRASGSGQKVVTQARDTINQLSKDVSQVGEVIESLATHTKSIGSILDVIRAISEQT
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTDEVQVMIDKLQSESARAVNAM
CEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
SQSRSRSQEGVSAVDEASNTLSGISDQIGLISDMNIQVAAATEEQSTVVEDINRNVTEIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCHHHHHHHHHCCCHHHHH
DITQRTAATAQAAARASKDLNALATRLDQLVARFKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNLNMLTIKQKILLTVSLAVILSTVAVGLLGQHSARDVVEQRMLGSEMPAKMLSIRNELE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
KDMVSLLNAAKQLADSRMLGKWLEQGRPAEDESRVVSQLQDVASQYQLAQASYADRETGA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
YYTQSGFLRILTPEQDGWFFDYRSSGVQQRLNVFTEANGDVKLFINYQQLNGRGLAGLAK
EEECCCEEEEECCCCCCCEEEHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHH
SLDAMVQRLTSFKLEESGFVYLVDAKGEVQLHSDPGKIRKATLNSLYGKSGSLLSRADFN
HHHHHHHHHHHCCCCCCCEEEEEECCCCEEEECCCHHHHHHHHHHHHCCCCCCHHHCCCC
YMEVEVDGQPMMVASSYLPSIDWYLVAQVPEAEVFALLDEAALKILFSTLLIALAFVVLS
EEEEEECCCCEEEHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFVASSVSKPIAAVARMFRDIGEGEGDLRQRLPVQGEDELAQLASGFNSFISKIQDSVIE
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VAQTSEQLGKSAIDVSRQAQQTLEDSQDQKDRTMQVVTAINEMGATVNEIAANAAQAAEA
HHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
AKDADRASGSGQKVVTQARDTINQLSKDVSQVGEVIESLATHTKSIGSILDVIRAISEQT
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTDEVQVMIDKLQSESARAVNAM
CEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
SQSRSRSQEGVSAVDEASNTLSGISDQIGLISDMNIQVAAATEEQSTVVEDINRNVTEIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCHHHHHHHHHCCCHHHHH
DITQRTAATAQAAARASKDLNALATRLDQLVARFKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2162464; 10952301 [H]