Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776653

Identifier: 119776653

GI number: 119776653

Start: 4154606

End: 4154983

Strand: Reverse

Name: 119776653

Synonym: Sama_3521

Alternate gene names: NA

Gene position: 4154983-4154606 (Counterclockwise)

Preceding gene: 119776654

Following gene: 119776646

Centisome position: 96.49

GC content: 53.7

Gene sequence:

>378_bases
ATGTCAGTAATCGCCGTCCCGGAGCTGGAAAGGCCACAAGTTAAATCCCACCACAAGGCTCGTCACCTGAAGAAGCTGGC
GCTGGGGCCTTGGGCTGAAACCTGTATCGAATTTCGCTTTCAGGCCGATGAAGACAAGTTCGAGGCGCTGGATGAAGCAC
TGGCCAACCAGGAAATCGAAAACGGCTGGGACCTGCTGATTGCCTATTACAACGACCGCTACCATGTATCTGTGAGTTTT
TTCTCCGGACAGGGCAGCGTGGCCGAAGTCGCCAATACTGTTGCTGAGAGTATTCGCGGTGTGTTTGGCGATCTGCCGCT
GACCATTTATGCGGGTGATGCCAATTACGGCGACTGGGACACAACTTACGTGGACTAA

Upstream 100 bases:

>100_bases
TGGACACAAGCGCTTGCGACCCGGGCCAGAGTGGCGTAACCTGCCCGGGTCTACTGCAATTATCGGTGCCCTGTCGTGGC
ACTAAATCAGAGGAAATACC

Downstream 100 bases:

>100_bases
GTCAGCAGGTTCTCTGTTAAAAGCCCGGCATTGCCGGGCTTTTTCGCGTTTAAAGACTCAGTGTCAGCTCTTGCTCACCA
CGCAGATATTGCCTGCCAAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MSVIAVPELERPQVKSHHKARHLKKLALGPWAETCIEFRFQADEDKFEALDEALANQEIENGWDLLIAYYNDRYHVSVSF
FSGQGSVAEVANTVAESIRGVFGDLPLTIYAGDANYGDWDTTYVD

Sequences:

>Translated_125_residues
MSVIAVPELERPQVKSHHKARHLKKLALGPWAETCIEFRFQADEDKFEALDEALANQEIENGWDLLIAYYNDRYHVSVSF
FSGQGSVAEVANTVAESIRGVFGDLPLTIYAGDANYGDWDTTYVD
>Mature_124_residues
SVIAVPELERPQVKSHHKARHLKKLALGPWAETCIEFRFQADEDKFEALDEALANQEIENGWDLLIAYYNDRYHVSVSFF
SGQGSVAEVANTVAESIRGVFGDLPLTIYAGDANYGDWDTTYVD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14055; Mature: 13923

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVIAVPELERPQVKSHHKARHLKKLALGPWAETCIEFRFQADEDKFEALDEALANQEIE
CCEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
NGWDLLIAYYNDRYHVSVSFFSGQGSVAEVANTVAESIRGVFGDLPLTIYAGDANYGDWD
CCEEEEEEEECCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
TTYVD
CEECC
>Mature Secondary Structure 
SVIAVPELERPQVKSHHKARHLKKLALGPWAETCIEFRFQADEDKFEALDEALANQEIE
CEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
NGWDLLIAYYNDRYHVSVSFFSGQGSVAEVANTVAESIRGVFGDLPLTIYAGDANYGDWD
CCEEEEEEEECCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
TTYVD
CEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA