| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119776646
Identifier: 119776646
GI number: 119776646
Start: 4149687
End: 4149932
Strand: Reverse
Name: 119776646
Synonym: Sama_3514
Alternate gene names: NA
Gene position: 4149932-4149687 (Counterclockwise)
Preceding gene: 119776653
Following gene: 119776645
Centisome position: 96.37
GC content: 53.25
Gene sequence:
>246_bases ATGAAACGGCAGATTTGCTATGCCATTCTCGCGTATGCCGCCTGGCTTACTTATCAGGATATCAACGGCACACTGCAGGA CACTAACCTTGAAGGCATGCAGCCTCTGCTTCGCCAGGCTGTTGCCCAGCAGGTGGGTGATGCCAAGAGCCTGTCGGCTT ATCGAAACGAGCGAGAAACGGCAGCATGTGTTGACCCCTATGCCTGTAATAAGGCCGGGAACAAGTCTCCTGAACAGGGA GAATAA
Upstream 100 bases:
>100_bases AACTACTATTGAAAGTACTGATTTTTTTGAACAAAATTCGCCGTGAGTAGAGCGGAATCTATTCTCGACTAACAAATTGG AAGAATTGAAGGATATTGTC
Downstream 100 bases:
>100_bases TGGCCCTGACGGTCAACTCTGTAACAAACGGCACCCTAGGGTGCCGTTTGTGTTTTTTGCCCCTGCTTTTTCTCGGTGTT TGTGCCGCGTCAAAGGGAGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 81; Mature: 81
Protein sequence:
>81_residues MKRQICYAILAYAAWLTYQDINGTLQDTNLEGMQPLLRQAVAQQVGDAKSLSAYRNERETAACVDPYACNKAGNKSPEQG E
Sequences:
>Translated_81_residues MKRQICYAILAYAAWLTYQDINGTLQDTNLEGMQPLLRQAVAQQVGDAKSLSAYRNERETAACVDPYACNKAGNKSPEQG E >Mature_81_residues MKRQICYAILAYAAWLTYQDINGTLQDTNLEGMQPLLRQAVAQQVGDAKSLSAYRNERETAACVDPYACNKAGNKSPEQG E
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8955; Mature: 8955
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 3.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRQICYAILAYAAWLTYQDINGTLQDTNLEGMQPLLRQAVAQQVGDAKSLSAYRNERET CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC AACVDPYACNKAGNKSPEQGE HHHCCCHHCCCCCCCCCCCCC >Mature Secondary Structure MKRQICYAILAYAAWLTYQDINGTLQDTNLEGMQPLLRQAVAQQVGDAKSLSAYRNERET CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC AACVDPYACNKAGNKSPEQGE HHHCCCHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA