| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776635
Identifier: 119776635
GI number: 119776635
Start: 4135123
End: 4137618
Strand: Direct
Name: 119776635
Synonym: Sama_3503
Alternate gene names: NA
Gene position: 4135123-4137618 (Clockwise)
Preceding gene: 119776633
Following gene: 119776637
Centisome position: 96.03
GC content: 55.29
Gene sequence:
>2496_bases ATGTCATTTCTGTCGATTTTCGCCTCCCTTGGCAGGGCACTTTGTTACTGCATGTGCCTCTCGCTGCCCCTCACCGCATA CGCTACCTCTTTGGAAGCCTATCTGGGTTATCCCCTGGGGGAATGGCACGTCAGACACGATCAGGTGAATGGCTTTCTGG AAAAACTGGCCGCTGACAATCCCAGAGTCTCACTGGAGGATACAGGCTACAGCCATGAAAGGCGCAGGCAACTGACGGCG GTAATCACCTCACCAGCCAATCAGGACCGACTCAACGGGATTGTGGCCGACAGGGCGCTGGTCAAACAGGGGAAAGCGCA GCCAATGTTGGTGATATGGCTGGCGTATTCAATTCATGGCGATGAAGCCAGTGGTGCCCATGCCGCTTTGGCGCTGGCGC AGCATTTGGCATTGAGCCAGGAGAGCTGGATTACCGACCTGCTCAGCCAGAGTGTGGTACTTATCACCCCCAGCCAAAAC CCCGATGGACTCGACCGTTTTGCCAACTGGTCCAACAGCTACCGTGGGATAGCTGTGCCTGTGGCGGATGAAAACCATAA GGAACACAATCAAAACTGGCCTGCCGGACGCTATAACCATTTTCTGGCCGACCTCAACCGTGACTGGCTGTTCTTACGAC ATCCGGAGAGCCGGGGCAGGGTCGCATTACTCCATAAGTGGCAACCTCAGTATGTGGGGGACTTCCATGAAATGGGTCAT AACCAAAGCTACTTTTTCCAGCCCGGCGTCCCCGAGCGCACGCACCCACTGACAGAACAACGAAACCAGCAACTGACTGA GAAATTAGCCCATTTTTACCGTCAGGCTCTGGATGCCAAGCAGCAGGCCTACTTTAGCCGGCAGGGATTCGATGATTTCT TCTATGGCAAAGGCTCCACCTATCCGGACATCAATGGCGCCGTAGGGGTATTGTTCGAGCAGGCCAGCGCCCGCGGCCAG GTACAGGACTCGCAATACGGTGGTATCAGCCTGGCCGAGGCCATCGATAATCAGTTAACCACCTCCCTTGCTGCACTCAA AGGCGCTCACCAACTCCGCCAGGAACTCATCAGTTTTCAAAACGATTTTTACGCTGGTAAAGGTAAAACCGGTAAACAGG GTCGCCTGATCTCGACCCGGGGAGACAGACAGCGACTGCTGGTATTGGCTGATCTCCTGAACCGCCATGGCGTGGTTTAC CGCTATCTGACGCAGGACATGAAAGAAGGCAAACAAATATTCACAGCTGCTGATAGTCTGTTCATTCCCAACGAACAGCC TCAGTCTGTTTTGGTAGAAGCCCTGTTTGAGCGACGCACCCGATTTGAAGACCCCACCTTCTACGATGTCAGCGCCTGGG ATCTGGGCAGCGCCTTCAATCTGGCCATCGCAGAGAACATACGGCCTGCTGCGAACCAGCTCAGCACAGATGCACCAGCG TTTGGGCAGCCGGCACTGACAGAAGACACGGTTGCCCTCCTGATAGACTGGCAGCAAAGTGGCGCGGCCCCTTTGTTGGC GCAGCTTCACCGGGATGGCATAGCCGTCAGGGCCTCGGTAAAACCCTTTACTCCCGTGGCCAGCGCCCGTGCATTTGCCG CTGGCACCCTGATGATAAGTACAGCCCAGAAGCAAATGACGCGGGACGCATTACTGCCTTATCTCACCGACCTTGCCAGG CAATATGAGGTCCGCCTGTTCCCGGTCGTTTCATTCGCTTCCGCAACAGGAATTGATCTTGGCAGTGGCGACTTTGTCCC ACTCAAGCCAGTGAACGCCTTATTGGTGAGCGGTCGTGGCACCGATGCCACCGAGGTGGGGGAAATCTGGCGCTATTTGG ATTTGGAGCTGAAACAGGGCGTGACTCTGGTGGACTCAGACAGACTGGCACGGATTAGCCTTAACCGTTACAGCCATATA CTGCTCGCAGACGGAAATTATGATCACCTGGACGATGCCCTTGGACGCAAACTCGGTGAGTTTGCCGAACAGGGCGGCGT CATTGTGGCCCAGAAGCGGGCACTCATTTGGCTCAATAAACGCAACCTGCTCAGAAACACAGTATTGGAAGACGGGTTTT ATAAGCAGCAGTTTTCCACGGCTGGGCTTGGCTTTGATGACAAAGAAGCCCTGCGTGCCCGCCAGGCCATTGGTGGCGCC ATACTCAACTGGCAACTGGATCCGGCTCATCCACTGGCATTCGGCATGCCATCTGCCACTGTGCCCGTGATGAAAAATGA AGTACTGGGCTTATCCGACACCAGCGAGCCATTTGTTATCGCCGCACGCTATCCACAAAACCCGCTGGTCTCCGGCTACC TCTCTGACGAATACCAAAGGGCATTCGGTCTGAGCAATGCCCTCTTGGCAGAGCCCAAGGGTAAGGGCGTCGTGGTGGGA ACAACCGATAACCTGCTGTTTCGCAACATCTGGCTCGGCACTGAAAAAATCTACACCAATGCGCTCTACCTGTTACCTGC GGCCATGAGCCGCTAA
Upstream 100 bases:
>100_bases TCTCACTGTACGCCTTCCAGGATAGTTAAGCCTTGGTGGTCAATGAATCAACAAACTGCTAATTTGTTCAGCAATACAAA AAGATAATAAAGAGTAGAAC
Downstream 100 bases:
>100_bases CTGAACGTGTCCAGCAGCCCGGGGGCTTCCGCCCGGGCAAGACACCATACCTGCACCCTGACACCCTGAAGCTGTAACAT GGTGGCTATTTCATTGGCCG
Product: peptidase M14, carboxypeptidase A
Products: NA
Alternate protein names: Zinc-Dependent Carboxypeptidase Domain-Containing Protein; Zinc Carboxypeptidase; Zinc-Dependent Carboxypeptidase Domain-Conatining Protein; Deacylase/Carboxypeptidase Superfamily Protein; Zinc Carboxypeptidase Family; M14 Family Peptidase
Number of amino acids: Translated: 831; Mature: 830
Protein sequence:
>831_residues MSFLSIFASLGRALCYCMCLSLPLTAYATSLEAYLGYPLGEWHVRHDQVNGFLEKLAADNPRVSLEDTGYSHERRRQLTA VITSPANQDRLNGIVADRALVKQGKAQPMLVIWLAYSIHGDEASGAHAALALAQHLALSQESWITDLLSQSVVLITPSQN PDGLDRFANWSNSYRGIAVPVADENHKEHNQNWPAGRYNHFLADLNRDWLFLRHPESRGRVALLHKWQPQYVGDFHEMGH NQSYFFQPGVPERTHPLTEQRNQQLTEKLAHFYRQALDAKQQAYFSRQGFDDFFYGKGSTYPDINGAVGVLFEQASARGQ VQDSQYGGISLAEAIDNQLTTSLAALKGAHQLRQELISFQNDFYAGKGKTGKQGRLISTRGDRQRLLVLADLLNRHGVVY RYLTQDMKEGKQIFTAADSLFIPNEQPQSVLVEALFERRTRFEDPTFYDVSAWDLGSAFNLAIAENIRPAANQLSTDAPA FGQPALTEDTVALLIDWQQSGAAPLLAQLHRDGIAVRASVKPFTPVASARAFAAGTLMISTAQKQMTRDALLPYLTDLAR QYEVRLFPVVSFASATGIDLGSGDFVPLKPVNALLVSGRGTDATEVGEIWRYLDLELKQGVTLVDSDRLARISLNRYSHI LLADGNYDHLDDALGRKLGEFAEQGGVIVAQKRALIWLNKRNLLRNTVLEDGFYKQQFSTAGLGFDDKEALRARQAIGGA ILNWQLDPAHPLAFGMPSATVPVMKNEVLGLSDTSEPFVIAARYPQNPLVSGYLSDEYQRAFGLSNALLAEPKGKGVVVG TTDNLLFRNIWLGTEKIYTNALYLLPAAMSR
Sequences:
>Translated_831_residues MSFLSIFASLGRALCYCMCLSLPLTAYATSLEAYLGYPLGEWHVRHDQVNGFLEKLAADNPRVSLEDTGYSHERRRQLTA VITSPANQDRLNGIVADRALVKQGKAQPMLVIWLAYSIHGDEASGAHAALALAQHLALSQESWITDLLSQSVVLITPSQN PDGLDRFANWSNSYRGIAVPVADENHKEHNQNWPAGRYNHFLADLNRDWLFLRHPESRGRVALLHKWQPQYVGDFHEMGH NQSYFFQPGVPERTHPLTEQRNQQLTEKLAHFYRQALDAKQQAYFSRQGFDDFFYGKGSTYPDINGAVGVLFEQASARGQ VQDSQYGGISLAEAIDNQLTTSLAALKGAHQLRQELISFQNDFYAGKGKTGKQGRLISTRGDRQRLLVLADLLNRHGVVY RYLTQDMKEGKQIFTAADSLFIPNEQPQSVLVEALFERRTRFEDPTFYDVSAWDLGSAFNLAIAENIRPAANQLSTDAPA FGQPALTEDTVALLIDWQQSGAAPLLAQLHRDGIAVRASVKPFTPVASARAFAAGTLMISTAQKQMTRDALLPYLTDLAR QYEVRLFPVVSFASATGIDLGSGDFVPLKPVNALLVSGRGTDATEVGEIWRYLDLELKQGVTLVDSDRLARISLNRYSHI LLADGNYDHLDDALGRKLGEFAEQGGVIVAQKRALIWLNKRNLLRNTVLEDGFYKQQFSTAGLGFDDKEALRARQAIGGA ILNWQLDPAHPLAFGMPSATVPVMKNEVLGLSDTSEPFVIAARYPQNPLVSGYLSDEYQRAFGLSNALLAEPKGKGVVVG TTDNLLFRNIWLGTEKIYTNALYLLPAAMSR >Mature_830_residues SFLSIFASLGRALCYCMCLSLPLTAYATSLEAYLGYPLGEWHVRHDQVNGFLEKLAADNPRVSLEDTGYSHERRRQLTAV ITSPANQDRLNGIVADRALVKQGKAQPMLVIWLAYSIHGDEASGAHAALALAQHLALSQESWITDLLSQSVVLITPSQNP DGLDRFANWSNSYRGIAVPVADENHKEHNQNWPAGRYNHFLADLNRDWLFLRHPESRGRVALLHKWQPQYVGDFHEMGHN QSYFFQPGVPERTHPLTEQRNQQLTEKLAHFYRQALDAKQQAYFSRQGFDDFFYGKGSTYPDINGAVGVLFEQASARGQV QDSQYGGISLAEAIDNQLTTSLAALKGAHQLRQELISFQNDFYAGKGKTGKQGRLISTRGDRQRLLVLADLLNRHGVVYR YLTQDMKEGKQIFTAADSLFIPNEQPQSVLVEALFERRTRFEDPTFYDVSAWDLGSAFNLAIAENIRPAANQLSTDAPAF GQPALTEDTVALLIDWQQSGAAPLLAQLHRDGIAVRASVKPFTPVASARAFAAGTLMISTAQKQMTRDALLPYLTDLARQ YEVRLFPVVSFASATGIDLGSGDFVPLKPVNALLVSGRGTDATEVGEIWRYLDLELKQGVTLVDSDRLARISLNRYSHIL LADGNYDHLDDALGRKLGEFAEQGGVIVAQKRALIWLNKRNLLRNTVLEDGFYKQQFSTAGLGFDDKEALRARQAIGGAI LNWQLDPAHPLAFGMPSATVPVMKNEVLGLSDTSEPFVIAARYPQNPLVSGYLSDEYQRAFGLSNALLAEPKGKGVVVGT TDNLLFRNIWLGTEKIYTNALYLLPAAMSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 92155; Mature: 92024
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: PS00142 ZINC_PROTEASE ; PS00237 G_PROTEIN_RECEP_F1_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFLSIFASLGRALCYCMCLSLPLTAYATSLEAYLGYPLGEWHVRHDQVNGFLEKLAADN CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHEEHHHHHHHHHHHHCCCC PRVSLEDTGYSHERRRQLTAVITSPANQDRLNGIVADRALVKQGKAQPMLVIWLAYSIHG CCEEEECCCCCHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECC DEASGAHAALALAQHLALSQESWITDLLSQSVVLITPSQNPDGLDRFANWSNSYRGIAVP CCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCCCCEEEEE VADENHKEHNQNWPAGRYNHFLADLNRDWLFLRHPESRGRVALLHKWQPQYVGDFHEMGH ECCCCCHHCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCCCCHHHHCCC NQSYFFQPGVPERTHPLTEQRNQQLTEKLAHFYRQALDAKQQAYFSRQGFDDFFYGKGST CCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCC YPDINGAVGVLFEQASARGQVQDSQYGGISLAEAIDNQLTTSLAALKGAHQLRQELISFQ CCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NDFYAGKGKTGKQGRLISTRGDRQRLLVLADLLNRHGVVYRYLTQDMKEGKQIFTAADSL CCEECCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHCCE FIPNEQPQSVLVEALFERRTRFEDPTFYDVSAWDLGSAFNLAIAENIRPAANQLSTDAPA ECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEHHHHCCCHHHHHCCCCCCC FGQPALTEDTVALLIDWQQSGAAPLLAQLHRDGIAVRASVKPFTPVASARAFAAGTLMIS CCCCCCCCCCEEEEEEECCCCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHEEEE TAQKQMTRDALLPYLTDLARQYEVRLFPVVSFASATGIDLGSGDFVPLKPVNALLVSGRG HHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCCCCCCCCCEEECCCCCEEEEECCC TDATEVGEIWRYLDLELKQGVTLVDSDRLARISLNRYSHILLADGNYDHLDDALGRKLGE CCHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHH FAEQGGVIVAQKRALIWLNKRNLLRNTVLEDGFYKQQFSTAGLGFDDKEALRARQAIGGA HHHHCCEEEEECCEEEEECCHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCE ILNWQLDPAHPLAFGMPSATVPVMKNEVLGLSDTSEPFVIAARYPQNPLVSGYLSDEYQR EEEEECCCCCCCEECCCCCCCCHHHCCEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHH AFGLSNALLAEPKGKGVVVGTTDNLLFRNIWLGTEKIYTNALYLLPAAMSR HHCCCCHHEECCCCCEEEEECCCCEEEHHEECCHHHHHHHHHHEHHHHHCC >Mature Secondary Structure SFLSIFASLGRALCYCMCLSLPLTAYATSLEAYLGYPLGEWHVRHDQVNGFLEKLAADN HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHEEHHHHHHHHHHHHCCCC PRVSLEDTGYSHERRRQLTAVITSPANQDRLNGIVADRALVKQGKAQPMLVIWLAYSIHG CCEEEECCCCCHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECC DEASGAHAALALAQHLALSQESWITDLLSQSVVLITPSQNPDGLDRFANWSNSYRGIAVP CCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCCCCEEEEE VADENHKEHNQNWPAGRYNHFLADLNRDWLFLRHPESRGRVALLHKWQPQYVGDFHEMGH ECCCCCHHCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCCCCHHHHCCC NQSYFFQPGVPERTHPLTEQRNQQLTEKLAHFYRQALDAKQQAYFSRQGFDDFFYGKGST CCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCC YPDINGAVGVLFEQASARGQVQDSQYGGISLAEAIDNQLTTSLAALKGAHQLRQELISFQ CCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NDFYAGKGKTGKQGRLISTRGDRQRLLVLADLLNRHGVVYRYLTQDMKEGKQIFTAADSL CCEECCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHCCE FIPNEQPQSVLVEALFERRTRFEDPTFYDVSAWDLGSAFNLAIAENIRPAANQLSTDAPA ECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEHHHHCCCHHHHHCCCCCCC FGQPALTEDTVALLIDWQQSGAAPLLAQLHRDGIAVRASVKPFTPVASARAFAAGTLMIS CCCCCCCCCCEEEEEEECCCCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHEEEE TAQKQMTRDALLPYLTDLARQYEVRLFPVVSFASATGIDLGSGDFVPLKPVNALLVSGRG HHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCCCCCCCCCEEECCCCCEEEEECCC TDATEVGEIWRYLDLELKQGVTLVDSDRLARISLNRYSHILLADGNYDHLDDALGRKLGE CCHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHH FAEQGGVIVAQKRALIWLNKRNLLRNTVLEDGFYKQQFSTAGLGFDDKEALRARQAIGGA HHHHCCEEEEECCEEEEECCHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCE ILNWQLDPAHPLAFGMPSATVPVMKNEVLGLSDTSEPFVIAARYPQNPLVSGYLSDEYQR EEEEECCCCCCCEECCCCCCCCHHHCCEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHH AFGLSNALLAEPKGKGVVVGTTDNLLFRNIWLGTEKIYTNALYLLPAAMSR HHCCCCHHEECCCCCEEEEECCCCEEEHHEECCHHHHHHHHHHEHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA