Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776574

Identifier: 119776574

GI number: 119776574

Start: 4073079

End: 4073654

Strand: Reverse

Name: 119776574

Synonym: Sama_3442

Alternate gene names: NA

Gene position: 4073654-4073079 (Counterclockwise)

Preceding gene: 119776575

Following gene: 119776573

Centisome position: 94.6

GC content: 50.35

Gene sequence:

>576_bases
ATGAAAAATCAAGAACATGCCCAAGATGAAGATTCGCTGTCTATGGAAAGCCTGGAAGCGGCCTTGCTGGGAGAGGGCGA
CTGGTTGCATGTGCAGGAAACGGTCAAATTGTTACTGCTTTCCATGGCCCAGATAGAATTGACTCTCACGGATGGGGATT
ACAATGTCACCGGCTTGGGCCAGCAGTTTACCGATATGGCGTCTCACCTGCGGCAGGTAAATCTTTATCTGGCCAATCAA
CCCGACACGCCGAAAGACATTATCAAGCACGGCATCATGCTCGAAACCGAAATCGACAAGGGGGTGGTGGCCTTTCAATT
TTACGACCGCCTGTCCCAGCGGCTGCAACATGTAGTGACCGGGCTTGCCCTCACGGAGGATCTGCTCTGTGACGATAAAA
AGCGCTTGCAGGGTGAGGAGTGGCTACGGGTACAAAAGCAGATTAAATCCACATACTCCCTTGAATGTGAACGCAAAATG
TTCGATCTTGTGCTCCAGGGTATGCCACTTCATGAAGCCTTGGCGCTGTATCGGGATGAACATCTTTACCGCAAAGACGA
TATCGAACTCTTTTAG

Upstream 100 bases:

>100_bases
GCGAAGAGAATTATCTGTTCTACACTTAAGTCCAAGATGGTGGCTGCAGTCGGAATGTGGCCGGGATTCAATCCAGACCA
AGAAGGAATGGAAGAAGGTC

Downstream 100 bases:

>100_bases
CTCAGCTCTTCTTGCCTTGTCTGCGTCGCTGCCGCTGGCGGCAGCAGAGATGCCCTTTGCCGATTGGTGTACCAGTCTTG
CCGGGCAATGGCAGGGCACC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MKNQEHAQDEDSLSMESLEAALLGEGDWLHVQETVKLLLLSMAQIELTLTDGDYNVTGLGQQFTDMASHLRQVNLYLANQ
PDTPKDIIKHGIMLETEIDKGVVAFQFYDRLSQRLQHVVTGLALTEDLLCDDKKRLQGEEWLRVQKQIKSTYSLECERKM
FDLVLQGMPLHEALALYRDEHLYRKDDIELF

Sequences:

>Translated_191_residues
MKNQEHAQDEDSLSMESLEAALLGEGDWLHVQETVKLLLLSMAQIELTLTDGDYNVTGLGQQFTDMASHLRQVNLYLANQ
PDTPKDIIKHGIMLETEIDKGVVAFQFYDRLSQRLQHVVTGLALTEDLLCDDKKRLQGEEWLRVQKQIKSTYSLECERKM
FDLVLQGMPLHEALALYRDEHLYRKDDIELF
>Mature_191_residues
MKNQEHAQDEDSLSMESLEAALLGEGDWLHVQETVKLLLLSMAQIELTLTDGDYNVTGLGQQFTDMASHLRQVNLYLANQ
PDTPKDIIKHGIMLETEIDKGVVAFQFYDRLSQRLQHVVTGLALTEDLLCDDKKRLQGEEWLRVQKQIKSTYSLECERKM
FDLVLQGMPLHEALALYRDEHLYRKDDIELF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22064; Mature: 22064

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNQEHAQDEDSLSMESLEAALLGEGDWLHVQETVKLLLLSMAQIELTLTDGDYNVTGLG
CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHEEEEEECCCCCEEECC
QQFTDMASHLRQVNLYLANQPDTPKDIIKHGIMLETEIDKGVVAFQFYDRLSQRLQHVVT
HHHHHHHHHHHHHHHEECCCCCCHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH
GLALTEDLLCDDKKRLQGEEWLRVQKQIKSTYSLECERKMFDLVLQGMPLHEALALYRDE
HHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHH
HLYRKDDIELF
HCCCCCCCCCC
>Mature Secondary Structure
MKNQEHAQDEDSLSMESLEAALLGEGDWLHVQETVKLLLLSMAQIELTLTDGDYNVTGLG
CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHEEEEEECCCCCEEECC
QQFTDMASHLRQVNLYLANQPDTPKDIIKHGIMLETEIDKGVVAFQFYDRLSQRLQHVVT
HHHHHHHHHHHHHHHEECCCCCCHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH
GLALTEDLLCDDKKRLQGEEWLRVQKQIKSTYSLECERKMFDLVLQGMPLHEALALYRDE
HHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHH
HLYRKDDIELF
HCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA