| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776573
Identifier: 119776573
GI number: 119776573
Start: 4072559
End: 4073062
Strand: Reverse
Name: 119776573
Synonym: Sama_3441
Alternate gene names: NA
Gene position: 4073062-4072559 (Counterclockwise)
Preceding gene: 119776574
Following gene: 119776566
Centisome position: 94.59
GC content: 58.13
Gene sequence:
>504_bases TTGTCTGCGTCGCTGCCGCTGGCGGCAGCAGAGATGCCCTTTGCCGATTGGTGTACCAGTCTTGCCGGGCAATGGCAGGG CACCGGCGCCCGTCCCGGTGAGGTGCCAAAGTCCGTAACCACCCAGGCCATGTGCAGTGCCGATCGCCAGCAGCTTATTT TCAGCGTTAGCCGTGGGGCGCGTTTTTCCAACAGTGAAACCTGGTGGTTTCGCCGTCAGGGAGACAGAGTCCTGCTGACT TACTTTAATGGCGTTACCGAAGACAAGGGGCAGGAGTTCAGCCTCTATCGTCGCGGCGGCGGTTACTCACTGTTGGGTGA GGGTGTGGTGAATGAGCGCCCGGCTCTGATACAGCTGCTGTTTGAACCCAAAGACCAGGGCTGGCAGTGGCTGCAGCAAT CCCGATTTCTCGACGATGATATTGAGCAGTACAGGCTCTACCGTGGGGTATCTTTGCAGCCTTTACCGGCCTCAACAGGG AGTCAAGGCCTTGAGGTTAACTAG
Upstream 100 bases:
>100_bases CTCCAGGGTATGCCACTTCATGAAGCCTTGGCGCTGTATCGGGATGAACATCTTTACCGCAAAGACGATATCGAACTCTT TTAGCTCAGCTCTTCTTGCC
Downstream 100 bases:
>100_bases GGGCCATTAACGTGCACCACCAAAGCCCTGCTGACGCCAGGCTTCGTAGCTGATAATGGCTACTGCGTTGGATAGGTTTA GGCTGCGGCTCGATTCCACC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 167; Mature: 166
Protein sequence:
>167_residues MSASLPLAAAEMPFADWCTSLAGQWQGTGARPGEVPKSVTTQAMCSADRQQLIFSVSRGARFSNSETWWFRRQGDRVLLT YFNGVTEDKGQEFSLYRRGGGYSLLGEGVVNERPALIQLLFEPKDQGWQWLQQSRFLDDDIEQYRLYRGVSLQPLPASTG SQGLEVN
Sequences:
>Translated_167_residues MSASLPLAAAEMPFADWCTSLAGQWQGTGARPGEVPKSVTTQAMCSADRQQLIFSVSRGARFSNSETWWFRRQGDRVLLT YFNGVTEDKGQEFSLYRRGGGYSLLGEGVVNERPALIQLLFEPKDQGWQWLQQSRFLDDDIEQYRLYRGVSLQPLPASTG SQGLEVN >Mature_166_residues SASLPLAAAEMPFADWCTSLAGQWQGTGARPGEVPKSVTTQAMCSADRQQLIFSVSRGARFSNSETWWFRRQGDRVLLTY FNGVTEDKGQEFSLYRRGGGYSLLGEGVVNERPALIQLLFEPKDQGWQWLQQSRFLDDDIEQYRLYRGVSLQPLPASTGS QGLEVN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18717; Mature: 18586
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSASLPLAAAEMPFADWCTSLAGQWQGTGARPGEVPKSVTTQAMCSADRQQLIFSVSRGA CCCCCCCHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC RFSNSETWWFRRQGDRVLLTYFNGVTEDKGQEFSLYRRGGGYSLLGEGVVNERPALIQLL CCCCCCCEEEEECCCEEEEEEECCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCEEEEE FEPKDQGWQWLQQSRFLDDDIEQYRLYRGVSLQPLPASTGSQGLEVN ECCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SASLPLAAAEMPFADWCTSLAGQWQGTGARPGEVPKSVTTQAMCSADRQQLIFSVSRGA CCCCCCHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC RFSNSETWWFRRQGDRVLLTYFNGVTEDKGQEFSLYRRGGGYSLLGEGVVNERPALIQLL CCCCCCCEEEEECCCEEEEEEECCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCEEEEE FEPKDQGWQWLQQSRFLDDDIEQYRLYRGVSLQPLPASTGSQGLEVN ECCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA