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The map label for this gene is acoR [H]

Identifier: 119776566

GI number: 119776566

Start: 4063864

End: 4065672

Strand: Reverse

Name: acoR [H]

Synonym: Sama_3434

Alternate gene names: 119776566

Gene position: 4065672-4063864 (Counterclockwise)

Preceding gene: 119776573

Following gene: 119776563

Centisome position: 94.42

GC content: 59.98

Gene sequence:

>1809_bases
ATGAAATCTGCCGTACAGCCCTGGCTTGCCGACTCTTGGCGTCGCAGTGAAGGTGCCGGTCTCAGTGAAACCCGGCCCGG
AGAACTCAAGCTCTCCCGGGTCGAACTGGATGAGCGTTGTGAGCGCCACCGTCAGCTTATCGCATTGGTGGAATCCGAAG
CCTTGCCGCTGTTTACCCGTCTGATGGCCCACACCGACAGCAGGCTGATTTTGTCGGACGCCGAGGGTTTTGTGCTGCGT
CACTGGGGACTGTCGCGTTACTCCGACCGTCTGGCCAACGTGGCGCTGGACTGCGGCGTCAATTGGCTCGAAGAGCACAA
GGGCACCAATGCCATAGGCACAGCGCTCAGGGCCAAAGAAGCGCTCTCTGTTGTGGGTGAGCAGCACTTTTGCCGCCCTC
ACCGCTTTATGAGCTGCACCGCCAGCCCAATTTTTTCGCCGTCCGGCGAACTGATTGGCGCCCTCGACATTACCTCCGAG
CGGCTCAAGCACAATCAACAAACCTTATTGCTTATCTCCAGCCTGGCGCAGCAGGTGGAAACCGCACTCTTGTGTTCGCT
GCCCGGTGGCCGCTTTCGGGTGGATTTGGCGGCTAGTCGTCAACTGCTCAGTTCCGGCTGGCAGGGCATCCTGATTGCCG
ATGATGAGGGCCGCCTGCTTGGGCTTAATCCCATGGCGCGCCAGTACCTTGGTGGCGCCTCGCCCGGTATGCAGTTGGGA
GAGCTGCTGGGGGACGACTGGCGTGCGCAGCAGGCGCAGTGCCTTCGCGGCGAGTTGCATTTGGCCACCTCGGCTATTGG
CGAGGGCGCCTTATGGATTCAAACCAATAAGGCCAGCAGTTTGCACGGTGTCAAGCCTCTGCGCTTTCACGATCCACAGC
TGGAAACCGCCTGGCAGCAGGCGCGCAAGGTCGTCAGCCGTAAGATCCCGTTGCTGGTACAGGGCGAAACCGGGGTGGGT
AAAGAGCACTTCGTGCGCCAGCTGTATCAGGACAGTCGCCTCGATGGCGAGCTGGTGGCGGTGAACTGTGCCGCCTTGCC
CACCGAGCTGATAGAGGCCGAACTCTTTGGTTATCAGGGCGGCGCCTTTACCGGCGCGTCACGTCAGGGGCACCTTGGCA
AGGTACGTCAGGCCGACGGTGGCTTTCTGTTTCTGGATGAAATTGGTGAGTTGCCGCTGGCGGCACAGGGCCGGCTGTTG
CGGGTACTGCAGGAGCGTGAAGTGACCCCTGTGGGTGGCCTCAAAAGCCATAGGGTAGATATTCAGGTGGTCGCAGCCAC
GCATATGGATTTGGCCGAGATGGTGCGCGATGGCCGCTTTCGTGAAGACCTTTATTTCCGTCTCAATGGTCTGCAGGTAA
GCCTGCCGCCACTGAGGCAGCGGGCCGATAAGTCACGGCTGATCCACAAGCTGCACCGACAGTACCGGGTCAATCCGCCG
GGAGATGAGCAGCGGCTGTGCCCACAGTTGCTGGCATTGCTGGAGGCATATGCCTGGCCTGGCAACCTGCGGGAGTTGGA
TAACCTGATGCAGGTGGCTTGCCTGATGGCTGAAGGCGAGCGCGAGCTGAGTCAGGCGCACTTGAGTGATGCCCACAGAA
GGGCACTGATGCAAGCGCGTCCCTTTTATTCGGGCAGGATGAACTCGGAAAGCAGCCAATCCTCAGCAGAATCAAGCCTT
AAGGCAGAGCTTGATGGGCGTATTCAAAACACCCTGGCCGACTGCGACGGCAATATCAGTGAAGCGGCTCGCCGCCTTGG
GGTAAGCCGCAACCTGATTTACCGCAGTCTTAAGCGTACCGACAGTTAG

Upstream 100 bases:

>100_bases
GGTCAGCCGAAGGATTGGCGTGGCGACCGAAGTCGTATTGTTGCGCCTTGGCACAGTTGTTATAAGTGACTGTGCTGAAA
CGGAACACAGGAGCACACCG

Downstream 100 bases:

>100_bases
CCGCAACACCAAAGGCACAGCCGATTGTCGGACGCAAGTTCAGAAAGTTAACGCGGCAAGCAAATCGTTACGCACAGGCC
GCCGGTTGGCCTGTTTTGGG

Product: sigma-54 dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 602; Mature: 602

Protein sequence:

>602_residues
MKSAVQPWLADSWRRSEGAGLSETRPGELKLSRVELDERCERHRQLIALVESEALPLFTRLMAHTDSRLILSDAEGFVLR
HWGLSRYSDRLANVALDCGVNWLEEHKGTNAIGTALRAKEALSVVGEQHFCRPHRFMSCTASPIFSPSGELIGALDITSE
RLKHNQQTLLLISSLAQQVETALLCSLPGGRFRVDLAASRQLLSSGWQGILIADDEGRLLGLNPMARQYLGGASPGMQLG
ELLGDDWRAQQAQCLRGELHLATSAIGEGALWIQTNKASSLHGVKPLRFHDPQLETAWQQARKVVSRKIPLLVQGETGVG
KEHFVRQLYQDSRLDGELVAVNCAALPTELIEAELFGYQGGAFTGASRQGHLGKVRQADGGFLFLDEIGELPLAAQGRLL
RVLQEREVTPVGGLKSHRVDIQVVAATHMDLAEMVRDGRFREDLYFRLNGLQVSLPPLRQRADKSRLIHKLHRQYRVNPP
GDEQRLCPQLLALLEAYAWPGNLRELDNLMQVACLMAEGERELSQAHLSDAHRRALMQARPFYSGRMNSESSQSSAESSL
KAELDGRIQNTLADCDGNISEAARRLGVSRNLIYRSLKRTDS

Sequences:

>Translated_602_residues
MKSAVQPWLADSWRRSEGAGLSETRPGELKLSRVELDERCERHRQLIALVESEALPLFTRLMAHTDSRLILSDAEGFVLR
HWGLSRYSDRLANVALDCGVNWLEEHKGTNAIGTALRAKEALSVVGEQHFCRPHRFMSCTASPIFSPSGELIGALDITSE
RLKHNQQTLLLISSLAQQVETALLCSLPGGRFRVDLAASRQLLSSGWQGILIADDEGRLLGLNPMARQYLGGASPGMQLG
ELLGDDWRAQQAQCLRGELHLATSAIGEGALWIQTNKASSLHGVKPLRFHDPQLETAWQQARKVVSRKIPLLVQGETGVG
KEHFVRQLYQDSRLDGELVAVNCAALPTELIEAELFGYQGGAFTGASRQGHLGKVRQADGGFLFLDEIGELPLAAQGRLL
RVLQEREVTPVGGLKSHRVDIQVVAATHMDLAEMVRDGRFREDLYFRLNGLQVSLPPLRQRADKSRLIHKLHRQYRVNPP
GDEQRLCPQLLALLEAYAWPGNLRELDNLMQVACLMAEGERELSQAHLSDAHRRALMQARPFYSGRMNSESSQSSAESSL
KAELDGRIQNTLADCDGNISEAARRLGVSRNLIYRSLKRTDS
>Mature_602_residues
MKSAVQPWLADSWRRSEGAGLSETRPGELKLSRVELDERCERHRQLIALVESEALPLFTRLMAHTDSRLILSDAEGFVLR
HWGLSRYSDRLANVALDCGVNWLEEHKGTNAIGTALRAKEALSVVGEQHFCRPHRFMSCTASPIFSPSGELIGALDITSE
RLKHNQQTLLLISSLAQQVETALLCSLPGGRFRVDLAASRQLLSSGWQGILIADDEGRLLGLNPMARQYLGGASPGMQLG
ELLGDDWRAQQAQCLRGELHLATSAIGEGALWIQTNKASSLHGVKPLRFHDPQLETAWQQARKVVSRKIPLLVQGETGVG
KEHFVRQLYQDSRLDGELVAVNCAALPTELIEAELFGYQGGAFTGASRQGHLGKVRQADGGFLFLDEIGELPLAAQGRLL
RVLQEREVTPVGGLKSHRVDIQVVAATHMDLAEMVRDGRFREDLYFRLNGLQVSLPPLRQRADKSRLIHKLHRQYRVNPP
GDEQRLCPQLLALLEAYAWPGNLRELDNLMQVACLMAEGERELSQAHLSDAHRRALMQARPFYSGRMNSESSQSSAESSL
KAELDGRIQNTLADCDGNISEAARRLGVSRNLIYRSLKRTDS

Specific function: Required for sigma-54-dependent transcription of acoXABC [H]

COG id: COG3284

COG function: function code QK; Transcriptional activator of acetoin/glycerol metabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=404, Percent_Identity=32.6732673267327, Blast_Score=200, Evalue=2e-52,
Organism=Escherichia coli, GI1788550, Length=359, Percent_Identity=36.4902506963788, Blast_Score=193, Evalue=3e-50,
Organism=Escherichia coli, GI87082117, Length=330, Percent_Identity=37.8787878787879, Blast_Score=188, Evalue=1e-48,
Organism=Escherichia coli, GI1790437, Length=311, Percent_Identity=38.2636655948553, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI1790299, Length=329, Percent_Identity=38.6018237082067, Blast_Score=183, Evalue=2e-47,
Organism=Escherichia coli, GI1786524, Length=326, Percent_Identity=38.0368098159509, Blast_Score=179, Evalue=5e-46,
Organism=Escherichia coli, GI1789087, Length=312, Percent_Identity=35.8974358974359, Blast_Score=167, Evalue=3e-42,
Organism=Escherichia coli, GI1788905, Length=303, Percent_Identity=34.3234323432343, Blast_Score=163, Evalue=3e-41,
Organism=Escherichia coli, GI87082152, Length=243, Percent_Identity=41.1522633744856, Blast_Score=159, Evalue=7e-40,
Organism=Escherichia coli, GI87081872, Length=209, Percent_Identity=42.1052631578947, Blast_Score=147, Evalue=3e-36,
Organism=Escherichia coli, GI1787583, Length=234, Percent_Identity=38.4615384615385, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1789828, Length=243, Percent_Identity=35.3909465020576, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI87081858, Length=642, Percent_Identity=25.3894080996885, Blast_Score=131, Evalue=1e-31,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 66786; Mature: 66786

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSAVQPWLADSWRRSEGAGLSETRPGELKLSRVELDERCERHRQLIALVESEALPLFTR
CCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHH
LMAHTDSRLILSDAEGFVLRHWGLSRYSDRLANVALDCGVNWLEEHKGTNAIGTALRAKE
HHHCCCCEEEEECCCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHH
ALSVVGEQHFCRPHRFMSCTASPIFSPSGELIGALDITSERLKHNQQTLLLISSLAQQVE
HHHHHHHHHCCCCHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHH
TALLCSLPGGRFRVDLAASRQLLSSGWQGILIADDEGRLLGLNPMARQYLGGASPGMQLG
HHHHHCCCCCCEEEEHHHHHHHHHCCCCEEEEECCCCCEECCCHHHHHHCCCCCCCHHHH
ELLGDDWRAQQAQCLRGELHLATSAIGEGALWIQTNKASSLHGVKPLRFHDPQLETAWQQ
HHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH
ARKVVSRKIPLLVQGETGVGKEHFVRQLYQDSRLDGELVAVNCAALPTELIEAELFGYQG
HHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHCCCC
GAFTGASRQGHLGKVRQADGGFLFLDEIGELPLAAQGRLLRVLQEREVTPVGGLKSHRVD
CCCCCCCCCCCCCCCEECCCCEEEHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEE
IQVVAATHMDLAEMVRDGRFREDLYFRLNGLQVSLPPLRQRADKSRLIHKLHRQYRVNPP
EEEEEEHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHHHHHHHHHHHHHHCCCCCC
GDEQRLCPQLLALLEAYAWPGNLRELDNLMQVACLMAEGERELSQAHLSDAHRRALMQAR
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC
PFYSGRMNSESSQSSAESSLKAELDGRIQNTLADCDGNISEAARRLGVSRNLIYRSLKRT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHC
DS
CC
>Mature Secondary Structure
MKSAVQPWLADSWRRSEGAGLSETRPGELKLSRVELDERCERHRQLIALVESEALPLFTR
CCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHH
LMAHTDSRLILSDAEGFVLRHWGLSRYSDRLANVALDCGVNWLEEHKGTNAIGTALRAKE
HHHCCCCEEEEECCCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHH
ALSVVGEQHFCRPHRFMSCTASPIFSPSGELIGALDITSERLKHNQQTLLLISSLAQQVE
HHHHHHHHHCCCCHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHH
TALLCSLPGGRFRVDLAASRQLLSSGWQGILIADDEGRLLGLNPMARQYLGGASPGMQLG
HHHHHCCCCCCEEEEHHHHHHHHHCCCCEEEEECCCCCEECCCHHHHHHCCCCCCCHHHH
ELLGDDWRAQQAQCLRGELHLATSAIGEGALWIQTNKASSLHGVKPLRFHDPQLETAWQQ
HHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH
ARKVVSRKIPLLVQGETGVGKEHFVRQLYQDSRLDGELVAVNCAALPTELIEAELFGYQG
HHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHCCCC
GAFTGASRQGHLGKVRQADGGFLFLDEIGELPLAAQGRLLRVLQEREVTPVGGLKSHRVD
CCCCCCCCCCCCCCCEECCCCEEEHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEE
IQVVAATHMDLAEMVRDGRFREDLYFRLNGLQVSLPPLRQRADKSRLIHKLHRQYRVNPP
EEEEEEHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHHHHHHHHHHHHHHCCCCCC
GDEQRLCPQLLALLEAYAWPGNLRELDNLMQVACLMAEGERELSQAHLSDAHRRALMQAR
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC
PFYSGRMNSESSQSSAESSLKAELDGRIQNTLADCDGNISEAARRLGVSRNLIYRSLKRT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHC
DS
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1378052 [H]