| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is cpxA [H]
Identifier: 119776565
GI number: 119776565
Start: 4062455
End: 4063816
Strand: Direct
Name: cpxA [H]
Synonym: Sama_3433
Alternate gene names: 119776565
Gene position: 4062455-4063816 (Clockwise)
Preceding gene: 119776564
Following gene: 119776567
Centisome position: 94.34
GC content: 59.62
Gene sequence:
>1362_bases ATGAACACCCAAACCCTGCCCAATCGCCTCTTTATCAAACTGCTGCTCGGTTTCTGGCTATGCAGCTCTGTGGTGCTGGT TGCCGTAGGCAGCCTGCCACTGCTGCAACAGCAGCGGGAATCCACCCCCATTCCCAAAGAGCTGCAACAGACTCTGGATA AGATTGCCAGGGCGATTGAGCGGGAGCCTGAACTGATGGAGCCAGAGCGGATGCGGCGCTGGGAGCGCTCGCGTCACGCC GACGGCAAGCCCATGCGGGTATTTATCACCAATGAGGAAGGCCGCATTCTCGGCGAGCGCCAACCCCGCTCTCTGCGTAA ATTTATCCTGCTCGCCGAAGAAGCCGAGCGCCCCATCATGTATCAGTTCCGCGATGAAATGGTGTTTGGCCCCAAGGAGT TCCATGTCGATGGTAAGGAATACCACCTCTATGGCCGGGTGCCAGGGCAGCATCCACGGCCACTGTTCCTGTTTTTTATC GAGCACAAGTTGCTGACACTGGGGCTCGCGGTGTTGGTCTCGGGGCTCTTGTGCGGCCTGCTGGCATGGCACCTTGGCAG GCCCCTTAAGATGTTGAAACAAAGCGCCGATGCCTTGGCACGGGGCAACCTTGGCAGCCGGGTCGATGAAGCCACCCTGA ATCGCCGGGATGAGTTGGGCCAGCTGGGCCATGCCTTCAACGCCATGGCCGAAGCCATTGAGCAGCAGGTCAACAATCAG CAGCGACTGATGGGGGACATCAGCCACGAGCTGCGCACCCCCCTGACCCGGCTGCAGCTGGCGCTGGCATTGGCACGCAA GCGAGGTCAGGACAGTAATGAGCTAAACCGTATTGCCCACGAGGCCGAGCAGCTCGATGCCCTGATAGCCGAGCTGTTGA CTCTCTCCCGGGTGACCATGGGCGCCACCGAGGCCAAAGTTGACATCGAACTTGCCGAGACCCTCGGCCAGGTATTGGAT GATGCGGAGTTTGAAGCCAGCGAATGCGGCAAGCATCTGGCCATTGAAATGGACGACAACCTGCTGTTAAGCCACACCCC CAAGTTATTGGCACGGGCGGTGGAAAATTTGCTGCGTAACGCCATCCGCTACGCCAGGCTGCAGGTCAGTCTGACTGTGA CAGACACTCAGGACCGCATTGAAATTCAAATTTGTGATGATGGCCCCGGCGTGGCTGACGCCGAACTCGAAGCCATCTTC CGTCCTTTCTATCGCACCGATAAGTCCCGCGAGCGTGAGAGCGGCGGTTGGGGGCTTGGCCTCGCCATTACCGCGGCGGC CATCGAAGCCCAGGGCGGCAGCATCAGCGCCCAAAACAGGCCAACCGGCGGCCTGTGCGTAACGATTTGCTTGCCGCGTT AA
Upstream 100 bases:
>100_bases TGGATATGCACCTGTCGAACCTGCGCAAGAAGTTGCCCGAGCGCAGCGATGGTCGCCCCAGGGTAAAAACCATCCGTGGT AAGGGATATATCTGGCTGAA
Downstream 100 bases:
>100_bases CTTTCTGAACTTGCGTCCGACAATCGGCTGTGCCTTTGGTGTTGCGGCTAACTGTCGGTACGCTTAAGACTGCGGTAAAT CAGGTTGCGGCTTACCCCAA
Product: sensor protein CpxA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 453; Mature: 453
Protein sequence:
>453_residues MNTQTLPNRLFIKLLLGFWLCSSVVLVAVGSLPLLQQQRESTPIPKELQQTLDKIARAIEREPELMEPERMRRWERSRHA DGKPMRVFITNEEGRILGERQPRSLRKFILLAEEAERPIMYQFRDEMVFGPKEFHVDGKEYHLYGRVPGQHPRPLFLFFI EHKLLTLGLAVLVSGLLCGLLAWHLGRPLKMLKQSADALARGNLGSRVDEATLNRRDELGQLGHAFNAMAEAIEQQVNNQ QRLMGDISHELRTPLTRLQLALALARKRGQDSNELNRIAHEAEQLDALIAELLTLSRVTMGATEAKVDIELAETLGQVLD DAEFEASECGKHLAIEMDDNLLLSHTPKLLARAVENLLRNAIRYARLQVSLTVTDTQDRIEIQICDDGPGVADAELEAIF RPFYRTDKSRERESGGWGLGLAITAAAIEAQGGSISAQNRPTGGLCVTICLPR
Sequences:
>Translated_453_residues MNTQTLPNRLFIKLLLGFWLCSSVVLVAVGSLPLLQQQRESTPIPKELQQTLDKIARAIEREPELMEPERMRRWERSRHA DGKPMRVFITNEEGRILGERQPRSLRKFILLAEEAERPIMYQFRDEMVFGPKEFHVDGKEYHLYGRVPGQHPRPLFLFFI EHKLLTLGLAVLVSGLLCGLLAWHLGRPLKMLKQSADALARGNLGSRVDEATLNRRDELGQLGHAFNAMAEAIEQQVNNQ QRLMGDISHELRTPLTRLQLALALARKRGQDSNELNRIAHEAEQLDALIAELLTLSRVTMGATEAKVDIELAETLGQVLD DAEFEASECGKHLAIEMDDNLLLSHTPKLLARAVENLLRNAIRYARLQVSLTVTDTQDRIEIQICDDGPGVADAELEAIF RPFYRTDKSRERESGGWGLGLAITAAAIEAQGGSISAQNRPTGGLCVTICLPR >Mature_453_residues MNTQTLPNRLFIKLLLGFWLCSSVVLVAVGSLPLLQQQRESTPIPKELQQTLDKIARAIEREPELMEPERMRRWERSRHA DGKPMRVFITNEEGRILGERQPRSLRKFILLAEEAERPIMYQFRDEMVFGPKEFHVDGKEYHLYGRVPGQHPRPLFLFFI EHKLLTLGLAVLVSGLLCGLLAWHLGRPLKMLKQSADALARGNLGSRVDEATLNRRDELGQLGHAFNAMAEAIEQQVNNQ QRLMGDISHELRTPLTRLQLALALARKRGQDSNELNRIAHEAEQLDALIAELLTLSRVTMGATEAKVDIELAETLGQVLD DAEFEASECGKHLAIEMDDNLLLSHTPKLLARAVENLLRNAIRYARLQVSLTVTDTQDRIEIQICDDGPGVADAELEAIF RPFYRTDKSRERESGGWGLGLAITAAAIEAQGGSISAQNRPTGGLCVTICLPR
Specific function: This protein is involved in several diverse cellular processes, such as the functioning of acetohydroxyacid synthetase I, in the biosynthesis of isoleucine and valine, the TraJ protein activation activity for tra gene expression in F plasmid, and the synt
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1790346, Length=454, Percent_Identity=37.8854625550661, Blast_Score=225, Evalue=5e-60, Organism=Escherichia coli, GI1787894, Length=334, Percent_Identity=31.7365269461078, Blast_Score=134, Evalue=2e-32, Organism=Escherichia coli, GI1788393, Length=282, Percent_Identity=34.7517730496454, Blast_Score=127, Evalue=2e-30, Organism=Escherichia coli, GI1786783, Length=300, Percent_Identity=31, Blast_Score=112, Evalue=7e-26, Organism=Escherichia coli, GI1789808, Length=302, Percent_Identity=29.8013245033113, Blast_Score=108, Evalue=6e-25, Organism=Escherichia coli, GI1786912, Length=228, Percent_Identity=31.5789473684211, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1786600, Length=222, Percent_Identity=27.4774774774775, Blast_Score=93, Evalue=4e-20, Organism=Escherichia coli, GI1788279, Length=274, Percent_Identity=30.2919708029197, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1789149, Length=325, Percent_Identity=27.0769230769231, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI1790436, Length=247, Percent_Identity=27.1255060728745, Blast_Score=79, Evalue=9e-16, Organism=Escherichia coli, GI145693157, Length=250, Percent_Identity=26, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI87081816, Length=341, Percent_Identity=25.2199413489736, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1788713, Length=239, Percent_Identity=26.7782426778243, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI87082128, Length=298, Percent_Identity=22.8187919463087, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1790861, Length=301, Percent_Identity=23.5880398671096, Blast_Score=63, Evalue=4e-11, Organism=Escherichia coli, GI1788549, Length=223, Percent_Identity=30.0448430493274, Blast_Score=62, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 50844; Mature: 50844
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTQTLPNRLFIKLLLGFWLCSSVVLVAVGSLPLLQQQRESTPIPKELQQTLDKIARAIE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHH REPELMEPERMRRWERSRHADGKPMRVFITNEEGRILGERQPRSLRKFILLAEEAERPIM CCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCH YQFRDEMVFGPKEFHVDGKEYHLYGRVPGQHPRPLFLFFIEHKLLTLGLAVLVSGLLCGL HHHHHHHCCCCHHEECCCCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHH LAWHLGRPLKMLKQSADALARGNLGSRVDEATLNRRDELGQLGHAFNAMAEAIEQQVNNQ HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH QRLMGDISHELRTPLTRLQLALALARKRGQDSNELNRIAHEAEQLDALIAELLTLSRVTM HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GATEAKVDIELAETLGQVLDDAEFEASECGKHLAIEMDDNLLLSHTPKLLARAVENLLRN CCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCEEEEEECCCEEECCCHHHHHHHHHHHHHH AIRYARLQVSLTVTDTQDRIEIQICDDGPGVADAELEAIFRPFYRTDKSRERESGGWGLG HHHHHEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCHH LAITAAAIEAQGGSISAQNRPTGGLCVTICLPR HHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCC >Mature Secondary Structure MNTQTLPNRLFIKLLLGFWLCSSVVLVAVGSLPLLQQQRESTPIPKELQQTLDKIARAIE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHH REPELMEPERMRRWERSRHADGKPMRVFITNEEGRILGERQPRSLRKFILLAEEAERPIM CCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCH YQFRDEMVFGPKEFHVDGKEYHLYGRVPGQHPRPLFLFFIEHKLLTLGLAVLVSGLLCGL HHHHHHHCCCCHHEECCCCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHH LAWHLGRPLKMLKQSADALARGNLGSRVDEATLNRRDELGQLGHAFNAMAEAIEQQVNNQ HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH QRLMGDISHELRTPLTRLQLALALARKRGQDSNELNRIAHEAEQLDALIAELLTLSRVTM HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GATEAKVDIELAETLGQVLDDAEFEASECGKHLAIEMDDNLLLSHTPKLLARAVENLLRN CCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCEEEEEECCCEEECCCHHHHHHHHHHHHHH AIRYARLQVSLTVTDTQDRIEIQICDDGPGVADAELEAIFRPFYRTDKSRERESGGWGLG HHHHHEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCHH LAITAAAIEAQGGSISAQNRPTGGLCVTICLPR HHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]