| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is yaiE [C]
Identifier: 119776556
GI number: 119776556
Start: 4054922
End: 4055230
Strand: Direct
Name: yaiE [C]
Synonym: Sama_3424
Alternate gene names: 119776556
Gene position: 4054922-4055230 (Clockwise)
Preceding gene: 119776554
Following gene: 119776557
Centisome position: 94.17
GC content: 54.37
Gene sequence:
>309_bases ATGAAGGTTTTGGAAAACGTGAACGTCGCCCTTAAGGCCAATGTGTACTTTGACGGTAAGGTCACCAGCCGTGCCATCTA CGTTGGCGGACAAAAGCAGACTATCGGCGTGGTATTACCGGGCGAATATGAGTTTTCCACCACTCAGCCTGAGCAAATGC AGGTGACCAGCGGCTCCTTTGAGGTGCTGCTGCCGGGGGAGAGCCAGTGGCAAACCTTCGCTGAAGGCAGCACCTTCAAT CTGGACGCCGATGTCAGCTTCTCAATTCGTGCGACGGACGTTGCCGAGTACCTCTGCAGTTATCTCTGA
Upstream 100 bases:
>100_bases TGGCCGAAATCCAATCACATTACAGCATCAAATTATTCATTGGCCTGTAGCCGCGTTGCCCTTTATATTCGAGTAATCGC AGCTAAAGGAGAGGAAAACT
Downstream 100 bases:
>100_bases CGCCGTATTTATCCTTCAGCGTGCAGAAACACCCTGAGTTTGGCGACTTTCTGCACGCAAACCGCTATCTTTAGTCACAT GTGAAACTACAGGATAGGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 102; Mature: 102
Protein sequence:
>102_residues MKVLENVNVALKANVYFDGKVTSRAIYVGGQKQTIGVVLPGEYEFSTTQPEQMQVTSGSFEVLLPGESQWQTFAEGSTFN LDADVSFSIRATDVAEYLCSYL
Sequences:
>Translated_102_residues MKVLENVNVALKANVYFDGKVTSRAIYVGGQKQTIGVVLPGEYEFSTTQPEQMQVTSGSFEVLLPGESQWQTFAEGSTFN LDADVSFSIRATDVAEYLCSYL >Mature_102_residues MKVLENVNVALKANVYFDGKVTSRAIYVGGQKQTIGVVLPGEYEFSTTQPEQMQVTSGSFEVLLPGESQWQTFAEGSTFN LDADVSFSIRATDVAEYLCSYL
Specific function: Unknown
COG id: COG3123
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0345 family
Homologues:
Organism=Escherichia coli, GI1786590, Length=93, Percent_Identity=40.8602150537634, Blast_Score=80, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y3424_SHEAM (A1SB70)
Other databases:
- EMBL: CP000507 - RefSeq: YP_929296.1 - ProteinModelPortal: A1SB70 - SMR: A1SB70 - STRING: A1SB70 - GeneID: 4605671 - GenomeReviews: CP000507_GR - KEGG: saz:Sama_3424 - NMPDR: fig|326297.7.peg.3226 - eggNOG: COG3123 - HOGENOM: HBG297920 - OMA: TFNTGAP - PhylomeDB: A1SB70 - ProtClustDB: CLSK907656 - HAMAP: MF_01537 - InterPro: IPR009664 - InterPro: IPR014710 - Gene3D: G3DSA:2.60.120.10
Pfam domain/function: PF06865 DUF1255
EC number: NA
Molecular weight: Translated: 11213; Mature: 11213
Theoretical pI: Translated: 4.07; Mature: 4.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVLENVNVALKANVYFDGKVTSRAIYVGGQKQTIGVVLPGEYEFSTTQPEQMQVTSGSF CCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCEEEEEECCCEEECCCCCCEEEEECCCE EVLLPGESQWQTFAEGSTFNLDADVSFSIRATDVAEYLCSYL EEEECCCCCCEEECCCCEEEECCCCEEEEEEHHHHHHHHHCC >Mature Secondary Structure MKVLENVNVALKANVYFDGKVTSRAIYVGGQKQTIGVVLPGEYEFSTTQPEQMQVTSGSF CCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCEEEEEECCCEEECCCCCCEEEEECCCE EVLLPGESQWQTFAEGSTFNLDADVSFSIRATDVAEYLCSYL EEEECCCCCCEEECCCCEEEECCCCEEEEEEHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA