Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119776554

Identifier: 119776554

GI number: 119776554

Start: 4050719

End: 4052848

Strand: Direct

Name: 119776554

Synonym: Sama_3422

Alternate gene names: NA

Gene position: 4050719-4052848 (Clockwise)

Preceding gene: 119776553

Following gene: 119776556

Centisome position: 94.07

GC content: 55.07

Gene sequence:

>2130_bases
ATGGAACTACTGACCGCACCGCCCACGCCTTTGCTCAGCGGCGAGGACACTCAAATCAAACGCGCTGAAATCAAAGCCTA
TTTCCAAAACAGCTGGGCTCGGTATGAATCCCTGTTTTCCCTGATTTCCAATGACGATGCCTACTTTAAGAAAGCCGAGC
CACTGCGCCATCCACTGATTTTCTACTTCGGCCACACGGCAACTTTTTTTATCAATAAACTCAAGCTGGGCAAATACATA
GACGAGCGCATCAACGACCATTTCGAGTCAATGTTTGCCATTGGTGTGGACGAGATGTCCTGGGACGACCTGAACGACGC
CCATTACGACTGGCCACAGGTTGATGAGGTGCGAGCCTACCGCAATGCGGTGCGAGCCCTGATTGAAAGTCTTATCGACA
CCATGCCACTGGAGCTGCCCATCGGCCAAAGCAGCCTCGCCTGGGCCATATTGATGGGCATTGAACACGAGCGCATTCAC
CTCGAAACCTCCTCGGTTATTATCCGCCAGTTGCCCCTTGAAGATCTGACGCCTTCAATGCAGTGGCCCGAGTGTCGGGA
TTATGGCGAGGCGCCCGATAACCCGCTGATACAGGTCAAAGGCGGTGATATCAGCCTTGGCAAAGTCGATGAAGATCTAA
CCTACGGCTGGGATAACGAATACGGCCGTAGCCGTCACCACATCAGCGATTTTCGCGCCAGCGAAAAACTGGTGTCCAAC
GGCGAGTTTATGGCCTTTGTTAAGGCCGGTGGCTACAAGGAGCCAAAGTGGTGGAGCGACGAAGGCAACGCCTGGCGTGA
ATACACCAACGCCAATATGCCGCGCTTTTGGCGCCACATTGACGGCCGCTGGTATCAGCGCAACCTCTGCAGTGAAATCC
CGCTGCCACTCAATTGGCCGGTGGAAGTAAACCAGCTGGAAGCCAAGGCGTTTTGTAACTGGAAGGCGGCGACTACTGAG
CGCAGTATCCGTCTGCCCACCGAGGCCGAATGGTATTGGCTAAGGCGCGAGCTTGAAGGCGATATGACCGCCATAGGCAC
AGCCCCTGCCTGGCGCGAAGTGCCGGGAAATCTCAATCTCGCCCACTACGCCTCATCCTGCCCGGTGAACCGTTTCCGTC
AGGGACGCTTTTTCGATCTGGTGGGCAATGTGTGGCAATGGACCGAGACTCCCATCGATGGCTTCCCGGGTTTTGCAGTG
CACCCGCTGTATGATGACTTTTCCACCCCCACCTTTGATGGTAAACACAACCTCATCAAAGGCGGCAGCTGGATTTCCAC
CGGCAACGAGGCCATCGCCGCCTCACGCTATGCGTTTCGCCGTCACTTCTATCAGCATGCTGGCTTCCGCTACGTGGAGT
CCAGCCAATCACCGGATGAGGGCGTGAAGATGAATGTGTATGAAACCGATGAACTGATCTCCCAGTATCTGGAATTCCAT
TACGGCCGCGAGTACTTCGGCGTCGCAAATTTCTGCGTCAAAGGTGTGCAGGACGCACTGGCCGAAATCAACCTTGAGCG
CCACACCAGGGCGCTGGACATCGGTTGCTCCGTGGGCCGCGCCAGTTTTGAGCTGGCACGCCATTTTGATGCCGTGGATG
CCATCGATTTCTCCGCCCGATTTATCCAGCAGGCCTATGCCCTCAAGGAGCAGGGTGAAAAGCGTTACACCATTCGCACC
GAAGGTGAACTGGTGGAATACCGCACCGCATCGCTCGCAAGCCTTGGCTACAACGAGGTGAAGCACAAAATCGACTTCCT
GCAGGGTGACGCCCTTAACTTAAAGCCCCGCTTCAGTGGCTATGATTTGGTGTACGCCTCCAACCTTATCGACAGACTGA
ATGAGCCCAAGGCCTTCCTTGAGCAAATTCACAGCCGCATCAATGCAGGGGGGTATCTGGTGATTGCCTCGCCTTACACC
TGGCTTGAAGACTACACACCCAAGGCCAATTGGCTCGGTGGTATCAAGGTTAACGGTGAAAACTTCACCACCCTCGATGG
CCTGACAGAGACATTGATCCCCCACTTCGAACTGGTGGCGGTGAAGGAAGTGCCCTTCGTCATTCGCGAGACCAAACGTA
AGTTCCAGCACAGCCTGTCGGAGATGAGTATCTGGCGCAAACGCCAATGA

Upstream 100 bases:

>100_bases
GCACATCAATTCTGGCCGTAATGCCTCGCTGTCATTCTCAGCACTTATATTGATTGGCACAGCTGCCGACAGCCATATCC
GTACAGGGGAAAAACTTGCC

Downstream 100 bases:

>100_bases
GTTTCTGCAGATAGACAAACGCCCGCAATTGCGGGCGTTTTTATTAGGGTCGCACAGCTCTGGCTTTGATAGCAGCGACA
GTTCAAGGCATTCAACTGAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 709; Mature: 709

Protein sequence:

>709_residues
MELLTAPPTPLLSGEDTQIKRAEIKAYFQNSWARYESLFSLISNDDAYFKKAEPLRHPLIFYFGHTATFFINKLKLGKYI
DERINDHFESMFAIGVDEMSWDDLNDAHYDWPQVDEVRAYRNAVRALIESLIDTMPLELPIGQSSLAWAILMGIEHERIH
LETSSVIIRQLPLEDLTPSMQWPECRDYGEAPDNPLIQVKGGDISLGKVDEDLTYGWDNEYGRSRHHISDFRASEKLVSN
GEFMAFVKAGGYKEPKWWSDEGNAWREYTNANMPRFWRHIDGRWYQRNLCSEIPLPLNWPVEVNQLEAKAFCNWKAATTE
RSIRLPTEAEWYWLRRELEGDMTAIGTAPAWREVPGNLNLAHYASSCPVNRFRQGRFFDLVGNVWQWTETPIDGFPGFAV
HPLYDDFSTPTFDGKHNLIKGGSWISTGNEAIAASRYAFRRHFYQHAGFRYVESSQSPDEGVKMNVYETDELISQYLEFH
YGREYFGVANFCVKGVQDALAEINLERHTRALDIGCSVGRASFELARHFDAVDAIDFSARFIQQAYALKEQGEKRYTIRT
EGELVEYRTASLASLGYNEVKHKIDFLQGDALNLKPRFSGYDLVYASNLIDRLNEPKAFLEQIHSRINAGGYLVIASPYT
WLEDYTPKANWLGGIKVNGENFTTLDGLTETLIPHFELVAVKEVPFVIRETKRKFQHSLSEMSIWRKRQ

Sequences:

>Translated_709_residues
MELLTAPPTPLLSGEDTQIKRAEIKAYFQNSWARYESLFSLISNDDAYFKKAEPLRHPLIFYFGHTATFFINKLKLGKYI
DERINDHFESMFAIGVDEMSWDDLNDAHYDWPQVDEVRAYRNAVRALIESLIDTMPLELPIGQSSLAWAILMGIEHERIH
LETSSVIIRQLPLEDLTPSMQWPECRDYGEAPDNPLIQVKGGDISLGKVDEDLTYGWDNEYGRSRHHISDFRASEKLVSN
GEFMAFVKAGGYKEPKWWSDEGNAWREYTNANMPRFWRHIDGRWYQRNLCSEIPLPLNWPVEVNQLEAKAFCNWKAATTE
RSIRLPTEAEWYWLRRELEGDMTAIGTAPAWREVPGNLNLAHYASSCPVNRFRQGRFFDLVGNVWQWTETPIDGFPGFAV
HPLYDDFSTPTFDGKHNLIKGGSWISTGNEAIAASRYAFRRHFYQHAGFRYVESSQSPDEGVKMNVYETDELISQYLEFH
YGREYFGVANFCVKGVQDALAEINLERHTRALDIGCSVGRASFELARHFDAVDAIDFSARFIQQAYALKEQGEKRYTIRT
EGELVEYRTASLASLGYNEVKHKIDFLQGDALNLKPRFSGYDLVYASNLIDRLNEPKAFLEQIHSRINAGGYLVIASPYT
WLEDYTPKANWLGGIKVNGENFTTLDGLTETLIPHFELVAVKEVPFVIRETKRKFQHSLSEMSIWRKRQ
>Mature_709_residues
MELLTAPPTPLLSGEDTQIKRAEIKAYFQNSWARYESLFSLISNDDAYFKKAEPLRHPLIFYFGHTATFFINKLKLGKYI
DERINDHFESMFAIGVDEMSWDDLNDAHYDWPQVDEVRAYRNAVRALIESLIDTMPLELPIGQSSLAWAILMGIEHERIH
LETSSVIIRQLPLEDLTPSMQWPECRDYGEAPDNPLIQVKGGDISLGKVDEDLTYGWDNEYGRSRHHISDFRASEKLVSN
GEFMAFVKAGGYKEPKWWSDEGNAWREYTNANMPRFWRHIDGRWYQRNLCSEIPLPLNWPVEVNQLEAKAFCNWKAATTE
RSIRLPTEAEWYWLRRELEGDMTAIGTAPAWREVPGNLNLAHYASSCPVNRFRQGRFFDLVGNVWQWTETPIDGFPGFAV
HPLYDDFSTPTFDGKHNLIKGGSWISTGNEAIAASRYAFRRHFYQHAGFRYVESSQSPDEGVKMNVYETDELISQYLEFH
YGREYFGVANFCVKGVQDALAEINLERHTRALDIGCSVGRASFELARHFDAVDAIDFSARFIQQAYALKEQGEKRYTIRT
EGELVEYRTASLASLGYNEVKHKIDFLQGDALNLKPRFSGYDLVYASNLIDRLNEPKAFLEQIHSRINAGGYLVIASPYT
WLEDYTPKANWLGGIKVNGENFTTLDGLTETLIPHFELVAVKEVPFVIRETKRKFQHSLSEMSIWRKRQ

Specific function: Unknown

COG id: COG1262

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 81780; Mature: 81780

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLTAPPTPLLSGEDTQIKRAEIKAYFQNSWARYESLFSLISNDDAYFKKAEPLRHPLI
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCEE
FYFGHTATFFINKLKLGKYIDERINDHFESMFAIGVDEMSWDDLNDAHYDWPQVDEVRAY
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
RNAVRALIESLIDTMPLELPIGQSSLAWAILMGIEHERIHLETSSVIIRQLPLEDLTPSM
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCEEEEEHHHHHHHHCCHHHCCCCC
QWPECRDYGEAPDNPLIQVKGGDISLGKVDEDLTYGWDNEYGRSRHHISDFRASEKLVSN
CCCCHHCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
GEFMAFVKAGGYKEPKWWSDEGNAWREYTNANMPRFWRHIDGRWYQRNLCSEIPLPLNWP
CCEEEEEECCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHCCCHHHHHHHHCCCCCCCCC
VEVNQLEAKAFCNWKAATTERSIRLPTEAEWYWLRRELEGDMTAIGTAPAWREVPGNLNL
CCCCCCCHHHHCCCCCCCCCCCEECCCCCHHHHHHHHHCCCCEEECCCCCHHHCCCCCCH
AHYASSCPVNRFRQGRFFDLVGNVWQWTETPIDGFPGFAVHPLYDDFSTPTFDGKHNLIK
HHHCCCCCHHHHHCCCHHHHHCCHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEE
GGSWISTGNEAIAASRYAFRRHFYQHAGFRYVESSQSPDEGVKMNVYETDELISQYLEFH
CCCEECCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEECHHHHHHHHHHHH
YGREYFGVANFCVKGVQDALAEINLERHTRALDIGCSVGRASFELARHFDAVDAIDFSAR
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHEEEECCCCCCHHHHHHHHHHCHHHHHHHHHH
FIQQAYALKEQGEKRYTIRTEGELVEYRTASLASLGYNEVKHKIDFLQGDALNLKPRFSG
HHHHHHHHHHCCCCEEEEEECCCEEEHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCC
YDLVYASNLIDRLNEPKAFLEQIHSRINAGGYLVIASPYTWLEDYTPKANWLGGIKVNGE
CCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCCCCCCCEEECCC
NFTTLDGLTETLIPHFELVAVKEVPFVIRETKRKFQHSLSEMSIWRKRQ
CCEEHHHHHHHHCCCCEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MELLTAPPTPLLSGEDTQIKRAEIKAYFQNSWARYESLFSLISNDDAYFKKAEPLRHPLI
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCEE
FYFGHTATFFINKLKLGKYIDERINDHFESMFAIGVDEMSWDDLNDAHYDWPQVDEVRAY
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
RNAVRALIESLIDTMPLELPIGQSSLAWAILMGIEHERIHLETSSVIIRQLPLEDLTPSM
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCEEEEEHHHHHHHHCCHHHCCCCC
QWPECRDYGEAPDNPLIQVKGGDISLGKVDEDLTYGWDNEYGRSRHHISDFRASEKLVSN
CCCCHHCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
GEFMAFVKAGGYKEPKWWSDEGNAWREYTNANMPRFWRHIDGRWYQRNLCSEIPLPLNWP
CCEEEEEECCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHCCCHHHHHHHHCCCCCCCCC
VEVNQLEAKAFCNWKAATTERSIRLPTEAEWYWLRRELEGDMTAIGTAPAWREVPGNLNL
CCCCCCCHHHHCCCCCCCCCCCEECCCCCHHHHHHHHHCCCCEEECCCCCHHHCCCCCCH
AHYASSCPVNRFRQGRFFDLVGNVWQWTETPIDGFPGFAVHPLYDDFSTPTFDGKHNLIK
HHHCCCCCHHHHHCCCHHHHHCCHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEE
GGSWISTGNEAIAASRYAFRRHFYQHAGFRYVESSQSPDEGVKMNVYETDELISQYLEFH
CCCEECCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEECHHHHHHHHHHHH
YGREYFGVANFCVKGVQDALAEINLERHTRALDIGCSVGRASFELARHFDAVDAIDFSAR
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHEEEECCCCCCHHHHHHHHHHCHHHHHHHHHH
FIQQAYALKEQGEKRYTIRTEGELVEYRTASLASLGYNEVKHKIDFLQGDALNLKPRFSG
HHHHHHHHHHCCCCEEEEEECCCEEEHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCC
YDLVYASNLIDRLNEPKAFLEQIHSRINAGGYLVIASPYTWLEDYTPKANWLGGIKVNGE
CCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCCCCCCCEEECCC
NFTTLDGLTETLIPHFELVAVKEVPFVIRETKRKFQHSLSEMSIWRKRQ
CCEEHHHHHHHHCCCCEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA