| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776554
Identifier: 119776554
GI number: 119776554
Start: 4050719
End: 4052848
Strand: Direct
Name: 119776554
Synonym: Sama_3422
Alternate gene names: NA
Gene position: 4050719-4052848 (Clockwise)
Preceding gene: 119776553
Following gene: 119776556
Centisome position: 94.07
GC content: 55.07
Gene sequence:
>2130_bases ATGGAACTACTGACCGCACCGCCCACGCCTTTGCTCAGCGGCGAGGACACTCAAATCAAACGCGCTGAAATCAAAGCCTA TTTCCAAAACAGCTGGGCTCGGTATGAATCCCTGTTTTCCCTGATTTCCAATGACGATGCCTACTTTAAGAAAGCCGAGC CACTGCGCCATCCACTGATTTTCTACTTCGGCCACACGGCAACTTTTTTTATCAATAAACTCAAGCTGGGCAAATACATA GACGAGCGCATCAACGACCATTTCGAGTCAATGTTTGCCATTGGTGTGGACGAGATGTCCTGGGACGACCTGAACGACGC CCATTACGACTGGCCACAGGTTGATGAGGTGCGAGCCTACCGCAATGCGGTGCGAGCCCTGATTGAAAGTCTTATCGACA CCATGCCACTGGAGCTGCCCATCGGCCAAAGCAGCCTCGCCTGGGCCATATTGATGGGCATTGAACACGAGCGCATTCAC CTCGAAACCTCCTCGGTTATTATCCGCCAGTTGCCCCTTGAAGATCTGACGCCTTCAATGCAGTGGCCCGAGTGTCGGGA TTATGGCGAGGCGCCCGATAACCCGCTGATACAGGTCAAAGGCGGTGATATCAGCCTTGGCAAAGTCGATGAAGATCTAA CCTACGGCTGGGATAACGAATACGGCCGTAGCCGTCACCACATCAGCGATTTTCGCGCCAGCGAAAAACTGGTGTCCAAC GGCGAGTTTATGGCCTTTGTTAAGGCCGGTGGCTACAAGGAGCCAAAGTGGTGGAGCGACGAAGGCAACGCCTGGCGTGA ATACACCAACGCCAATATGCCGCGCTTTTGGCGCCACATTGACGGCCGCTGGTATCAGCGCAACCTCTGCAGTGAAATCC CGCTGCCACTCAATTGGCCGGTGGAAGTAAACCAGCTGGAAGCCAAGGCGTTTTGTAACTGGAAGGCGGCGACTACTGAG CGCAGTATCCGTCTGCCCACCGAGGCCGAATGGTATTGGCTAAGGCGCGAGCTTGAAGGCGATATGACCGCCATAGGCAC AGCCCCTGCCTGGCGCGAAGTGCCGGGAAATCTCAATCTCGCCCACTACGCCTCATCCTGCCCGGTGAACCGTTTCCGTC AGGGACGCTTTTTCGATCTGGTGGGCAATGTGTGGCAATGGACCGAGACTCCCATCGATGGCTTCCCGGGTTTTGCAGTG CACCCGCTGTATGATGACTTTTCCACCCCCACCTTTGATGGTAAACACAACCTCATCAAAGGCGGCAGCTGGATTTCCAC CGGCAACGAGGCCATCGCCGCCTCACGCTATGCGTTTCGCCGTCACTTCTATCAGCATGCTGGCTTCCGCTACGTGGAGT CCAGCCAATCACCGGATGAGGGCGTGAAGATGAATGTGTATGAAACCGATGAACTGATCTCCCAGTATCTGGAATTCCAT TACGGCCGCGAGTACTTCGGCGTCGCAAATTTCTGCGTCAAAGGTGTGCAGGACGCACTGGCCGAAATCAACCTTGAGCG CCACACCAGGGCGCTGGACATCGGTTGCTCCGTGGGCCGCGCCAGTTTTGAGCTGGCACGCCATTTTGATGCCGTGGATG CCATCGATTTCTCCGCCCGATTTATCCAGCAGGCCTATGCCCTCAAGGAGCAGGGTGAAAAGCGTTACACCATTCGCACC GAAGGTGAACTGGTGGAATACCGCACCGCATCGCTCGCAAGCCTTGGCTACAACGAGGTGAAGCACAAAATCGACTTCCT GCAGGGTGACGCCCTTAACTTAAAGCCCCGCTTCAGTGGCTATGATTTGGTGTACGCCTCCAACCTTATCGACAGACTGA ATGAGCCCAAGGCCTTCCTTGAGCAAATTCACAGCCGCATCAATGCAGGGGGGTATCTGGTGATTGCCTCGCCTTACACC TGGCTTGAAGACTACACACCCAAGGCCAATTGGCTCGGTGGTATCAAGGTTAACGGTGAAAACTTCACCACCCTCGATGG CCTGACAGAGACATTGATCCCCCACTTCGAACTGGTGGCGGTGAAGGAAGTGCCCTTCGTCATTCGCGAGACCAAACGTA AGTTCCAGCACAGCCTGTCGGAGATGAGTATCTGGCGCAAACGCCAATGA
Upstream 100 bases:
>100_bases GCACATCAATTCTGGCCGTAATGCCTCGCTGTCATTCTCAGCACTTATATTGATTGGCACAGCTGCCGACAGCCATATCC GTACAGGGGAAAAACTTGCC
Downstream 100 bases:
>100_bases GTTTCTGCAGATAGACAAACGCCCGCAATTGCGGGCGTTTTTATTAGGGTCGCACAGCTCTGGCTTTGATAGCAGCGACA GTTCAAGGCATTCAACTGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 709; Mature: 709
Protein sequence:
>709_residues MELLTAPPTPLLSGEDTQIKRAEIKAYFQNSWARYESLFSLISNDDAYFKKAEPLRHPLIFYFGHTATFFINKLKLGKYI DERINDHFESMFAIGVDEMSWDDLNDAHYDWPQVDEVRAYRNAVRALIESLIDTMPLELPIGQSSLAWAILMGIEHERIH LETSSVIIRQLPLEDLTPSMQWPECRDYGEAPDNPLIQVKGGDISLGKVDEDLTYGWDNEYGRSRHHISDFRASEKLVSN GEFMAFVKAGGYKEPKWWSDEGNAWREYTNANMPRFWRHIDGRWYQRNLCSEIPLPLNWPVEVNQLEAKAFCNWKAATTE RSIRLPTEAEWYWLRRELEGDMTAIGTAPAWREVPGNLNLAHYASSCPVNRFRQGRFFDLVGNVWQWTETPIDGFPGFAV HPLYDDFSTPTFDGKHNLIKGGSWISTGNEAIAASRYAFRRHFYQHAGFRYVESSQSPDEGVKMNVYETDELISQYLEFH YGREYFGVANFCVKGVQDALAEINLERHTRALDIGCSVGRASFELARHFDAVDAIDFSARFIQQAYALKEQGEKRYTIRT EGELVEYRTASLASLGYNEVKHKIDFLQGDALNLKPRFSGYDLVYASNLIDRLNEPKAFLEQIHSRINAGGYLVIASPYT WLEDYTPKANWLGGIKVNGENFTTLDGLTETLIPHFELVAVKEVPFVIRETKRKFQHSLSEMSIWRKRQ
Sequences:
>Translated_709_residues MELLTAPPTPLLSGEDTQIKRAEIKAYFQNSWARYESLFSLISNDDAYFKKAEPLRHPLIFYFGHTATFFINKLKLGKYI DERINDHFESMFAIGVDEMSWDDLNDAHYDWPQVDEVRAYRNAVRALIESLIDTMPLELPIGQSSLAWAILMGIEHERIH LETSSVIIRQLPLEDLTPSMQWPECRDYGEAPDNPLIQVKGGDISLGKVDEDLTYGWDNEYGRSRHHISDFRASEKLVSN GEFMAFVKAGGYKEPKWWSDEGNAWREYTNANMPRFWRHIDGRWYQRNLCSEIPLPLNWPVEVNQLEAKAFCNWKAATTE RSIRLPTEAEWYWLRRELEGDMTAIGTAPAWREVPGNLNLAHYASSCPVNRFRQGRFFDLVGNVWQWTETPIDGFPGFAV HPLYDDFSTPTFDGKHNLIKGGSWISTGNEAIAASRYAFRRHFYQHAGFRYVESSQSPDEGVKMNVYETDELISQYLEFH YGREYFGVANFCVKGVQDALAEINLERHTRALDIGCSVGRASFELARHFDAVDAIDFSARFIQQAYALKEQGEKRYTIRT EGELVEYRTASLASLGYNEVKHKIDFLQGDALNLKPRFSGYDLVYASNLIDRLNEPKAFLEQIHSRINAGGYLVIASPYT WLEDYTPKANWLGGIKVNGENFTTLDGLTETLIPHFELVAVKEVPFVIRETKRKFQHSLSEMSIWRKRQ >Mature_709_residues MELLTAPPTPLLSGEDTQIKRAEIKAYFQNSWARYESLFSLISNDDAYFKKAEPLRHPLIFYFGHTATFFINKLKLGKYI DERINDHFESMFAIGVDEMSWDDLNDAHYDWPQVDEVRAYRNAVRALIESLIDTMPLELPIGQSSLAWAILMGIEHERIH LETSSVIIRQLPLEDLTPSMQWPECRDYGEAPDNPLIQVKGGDISLGKVDEDLTYGWDNEYGRSRHHISDFRASEKLVSN GEFMAFVKAGGYKEPKWWSDEGNAWREYTNANMPRFWRHIDGRWYQRNLCSEIPLPLNWPVEVNQLEAKAFCNWKAATTE RSIRLPTEAEWYWLRRELEGDMTAIGTAPAWREVPGNLNLAHYASSCPVNRFRQGRFFDLVGNVWQWTETPIDGFPGFAV HPLYDDFSTPTFDGKHNLIKGGSWISTGNEAIAASRYAFRRHFYQHAGFRYVESSQSPDEGVKMNVYETDELISQYLEFH YGREYFGVANFCVKGVQDALAEINLERHTRALDIGCSVGRASFELARHFDAVDAIDFSARFIQQAYALKEQGEKRYTIRT EGELVEYRTASLASLGYNEVKHKIDFLQGDALNLKPRFSGYDLVYASNLIDRLNEPKAFLEQIHSRINAGGYLVIASPYT WLEDYTPKANWLGGIKVNGENFTTLDGLTETLIPHFELVAVKEVPFVIRETKRKFQHSLSEMSIWRKRQ
Specific function: Unknown
COG id: COG1262
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81780; Mature: 81780
Theoretical pI: Translated: 5.44; Mature: 5.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELLTAPPTPLLSGEDTQIKRAEIKAYFQNSWARYESLFSLISNDDAYFKKAEPLRHPLI CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCEE FYFGHTATFFINKLKLGKYIDERINDHFESMFAIGVDEMSWDDLNDAHYDWPQVDEVRAY EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH RNAVRALIESLIDTMPLELPIGQSSLAWAILMGIEHERIHLETSSVIIRQLPLEDLTPSM HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCEEEEEHHHHHHHHCCHHHCCCCC QWPECRDYGEAPDNPLIQVKGGDISLGKVDEDLTYGWDNEYGRSRHHISDFRASEKLVSN CCCCHHCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC GEFMAFVKAGGYKEPKWWSDEGNAWREYTNANMPRFWRHIDGRWYQRNLCSEIPLPLNWP CCEEEEEECCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHCCCHHHHHHHHCCCCCCCCC VEVNQLEAKAFCNWKAATTERSIRLPTEAEWYWLRRELEGDMTAIGTAPAWREVPGNLNL CCCCCCCHHHHCCCCCCCCCCCEECCCCCHHHHHHHHHCCCCEEECCCCCHHHCCCCCCH AHYASSCPVNRFRQGRFFDLVGNVWQWTETPIDGFPGFAVHPLYDDFSTPTFDGKHNLIK HHHCCCCCHHHHHCCCHHHHHCCHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEE GGSWISTGNEAIAASRYAFRRHFYQHAGFRYVESSQSPDEGVKMNVYETDELISQYLEFH CCCEECCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEECHHHHHHHHHHHH YGREYFGVANFCVKGVQDALAEINLERHTRALDIGCSVGRASFELARHFDAVDAIDFSAR CCCHHHHHHHHHHHHHHHHHHHCCHHHHHEEEECCCCCCHHHHHHHHHHCHHHHHHHHHH FIQQAYALKEQGEKRYTIRTEGELVEYRTASLASLGYNEVKHKIDFLQGDALNLKPRFSG HHHHHHHHHHCCCCEEEEEECCCEEEHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCC YDLVYASNLIDRLNEPKAFLEQIHSRINAGGYLVIASPYTWLEDYTPKANWLGGIKVNGE CCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCCCCCCCEEECCC NFTTLDGLTETLIPHFELVAVKEVPFVIRETKRKFQHSLSEMSIWRKRQ CCEEHHHHHHHHCCCCEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MELLTAPPTPLLSGEDTQIKRAEIKAYFQNSWARYESLFSLISNDDAYFKKAEPLRHPLI CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCEE FYFGHTATFFINKLKLGKYIDERINDHFESMFAIGVDEMSWDDLNDAHYDWPQVDEVRAY EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH RNAVRALIESLIDTMPLELPIGQSSLAWAILMGIEHERIHLETSSVIIRQLPLEDLTPSM HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCEEEEEHHHHHHHHCCHHHCCCCC QWPECRDYGEAPDNPLIQVKGGDISLGKVDEDLTYGWDNEYGRSRHHISDFRASEKLVSN CCCCHHCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC GEFMAFVKAGGYKEPKWWSDEGNAWREYTNANMPRFWRHIDGRWYQRNLCSEIPLPLNWP CCEEEEEECCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHCCCHHHHHHHHCCCCCCCCC VEVNQLEAKAFCNWKAATTERSIRLPTEAEWYWLRRELEGDMTAIGTAPAWREVPGNLNL CCCCCCCHHHHCCCCCCCCCCCEECCCCCHHHHHHHHHCCCCEEECCCCCHHHCCCCCCH AHYASSCPVNRFRQGRFFDLVGNVWQWTETPIDGFPGFAVHPLYDDFSTPTFDGKHNLIK HHHCCCCCHHHHHCCCHHHHHCCHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEE GGSWISTGNEAIAASRYAFRRHFYQHAGFRYVESSQSPDEGVKMNVYETDELISQYLEFH CCCEECCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEECHHHHHHHHHHHH YGREYFGVANFCVKGVQDALAEINLERHTRALDIGCSVGRASFELARHFDAVDAIDFSAR CCCHHHHHHHHHHHHHHHHHHHCCHHHHHEEEECCCCCCHHHHHHHHHHCHHHHHHHHHH FIQQAYALKEQGEKRYTIRTEGELVEYRTASLASLGYNEVKHKIDFLQGDALNLKPRFSG HHHHHHHHHHCCCCEEEEEECCCEEEHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCC YDLVYASNLIDRLNEPKAFLEQIHSRINAGGYLVIASPYTWLEDYTPKANWLGGIKVNGE CCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCCCCCCCEEECCC NFTTLDGLTETLIPHFELVAVKEVPFVIRETKRKFQHSLSEMSIWRKRQ CCEEHHHHHHHHCCCCEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA