Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is yaiE [C]

Identifier: 119776556

GI number: 119776556

Start: 4054922

End: 4055230

Strand: Direct

Name: yaiE [C]

Synonym: Sama_3424

Alternate gene names: 119776556

Gene position: 4054922-4055230 (Clockwise)

Preceding gene: 119776554

Following gene: 119776557

Centisome position: 94.17

GC content: 54.37

Gene sequence:

>309_bases
ATGAAGGTTTTGGAAAACGTGAACGTCGCCCTTAAGGCCAATGTGTACTTTGACGGTAAGGTCACCAGCCGTGCCATCTA
CGTTGGCGGACAAAAGCAGACTATCGGCGTGGTATTACCGGGCGAATATGAGTTTTCCACCACTCAGCCTGAGCAAATGC
AGGTGACCAGCGGCTCCTTTGAGGTGCTGCTGCCGGGGGAGAGCCAGTGGCAAACCTTCGCTGAAGGCAGCACCTTCAAT
CTGGACGCCGATGTCAGCTTCTCAATTCGTGCGACGGACGTTGCCGAGTACCTCTGCAGTTATCTCTGA

Upstream 100 bases:

>100_bases
TGGCCGAAATCCAATCACATTACAGCATCAAATTATTCATTGGCCTGTAGCCGCGTTGCCCTTTATATTCGAGTAATCGC
AGCTAAAGGAGAGGAAAACT

Downstream 100 bases:

>100_bases
CGCCGTATTTATCCTTCAGCGTGCAGAAACACCCTGAGTTTGGCGACTTTCTGCACGCAAACCGCTATCTTTAGTCACAT
GTGAAACTACAGGATAGGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 102

Protein sequence:

>102_residues
MKVLENVNVALKANVYFDGKVTSRAIYVGGQKQTIGVVLPGEYEFSTTQPEQMQVTSGSFEVLLPGESQWQTFAEGSTFN
LDADVSFSIRATDVAEYLCSYL

Sequences:

>Translated_102_residues
MKVLENVNVALKANVYFDGKVTSRAIYVGGQKQTIGVVLPGEYEFSTTQPEQMQVTSGSFEVLLPGESQWQTFAEGSTFN
LDADVSFSIRATDVAEYLCSYL
>Mature_102_residues
MKVLENVNVALKANVYFDGKVTSRAIYVGGQKQTIGVVLPGEYEFSTTQPEQMQVTSGSFEVLLPGESQWQTFAEGSTFN
LDADVSFSIRATDVAEYLCSYL

Specific function: Unknown

COG id: COG3123

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0345 family

Homologues:

Organism=Escherichia coli, GI1786590, Length=93, Percent_Identity=40.8602150537634, Blast_Score=80, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3424_SHEAM (A1SB70)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_929296.1
- ProteinModelPortal:   A1SB70
- SMR:   A1SB70
- STRING:   A1SB70
- GeneID:   4605671
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_3424
- NMPDR:   fig|326297.7.peg.3226
- eggNOG:   COG3123
- HOGENOM:   HBG297920
- OMA:   TFNTGAP
- PhylomeDB:   A1SB70
- ProtClustDB:   CLSK907656
- HAMAP:   MF_01537
- InterPro:   IPR009664
- InterPro:   IPR014710
- Gene3D:   G3DSA:2.60.120.10

Pfam domain/function: PF06865 DUF1255

EC number: NA

Molecular weight: Translated: 11213; Mature: 11213

Theoretical pI: Translated: 4.07; Mature: 4.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLENVNVALKANVYFDGKVTSRAIYVGGQKQTIGVVLPGEYEFSTTQPEQMQVTSGSF
CCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCEEEEEECCCEEECCCCCCEEEEECCCE
EVLLPGESQWQTFAEGSTFNLDADVSFSIRATDVAEYLCSYL
EEEECCCCCCEEECCCCEEEECCCCEEEEEEHHHHHHHHHCC
>Mature Secondary Structure
MKVLENVNVALKANVYFDGKVTSRAIYVGGQKQTIGVVLPGEYEFSTTQPEQMQVTSGSF
CCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCEEEEEECCCEEECCCCCCEEEEECCCE
EVLLPGESQWQTFAEGSTFNLDADVSFSIRATDVAEYLCSYL
EEEECCCCCCEEECCCCEEEECCCCEEEEEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA