| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776519
Identifier: 119776519
GI number: 119776519
Start: 4014228
End: 4014959
Strand: Direct
Name: 119776519
Synonym: Sama_3387
Alternate gene names: NA
Gene position: 4014228-4014959 (Clockwise)
Preceding gene: 119776518
Following gene: 119776520
Centisome position: 93.22
GC content: 55.33
Gene sequence:
>732_bases ATGGGGCTGATTGTTAAGTTTTGCGTTGGAATACTGGCATCTATGCTGGTCTGGCTGCCAGCGCAGGCAGATGAAGCCCT AAGCCAGAAGAGTATGACCCAGAACGCCGACGTCAATCTCGGGGCGCTCAGCACTGCCCTTAAGCCACAGGGAGCGGTGC GCGGCGAGTTTGAACAGACCCGCACCCTCAAGGCGTTAAAGCGACCTCTGGTCAGCCGTGGCAGCTTTGTGTTCTCACCC GACCAAGGCCTGATGTGGGCACAAAACCAGCCCTTTGAAAACTTACTGATTTTAAGCGAAACGCGCATGTTGAGCCGCGA CAGCGAAGGCCTGTGGCAACAAACCGAGGTCAATGCCAAAGCGGGCCCAGCTACCTTAATGCCCATGCTGGTGAAGGCCA TGATGGGCGGCGATATGGCTACGCTGGAGCGACATTTCTCACTGGCATTAAGCAGTCAGGAGAATCACTGGCAACTGACC CTCGCCCCAAAAGATGAGGATATCAAGGCACTGTTTGCCGCTATCGAGCTTGAAGGCAGTTTTATCGGCGATGCAGGCAC CACGCAGCAAACAGGCACCCAGACCAGAACAGACAAGGCCAGTACAAACAGGCTGAAACTTATCAGCCCCAATGGCGATG TGAGCGATATCCGCTTCAGCAACCAGCAAAGCGGGCCGCTGTCGGAGCAAGAACTGCAGGCCTTTATCCCGCAAATTGAG TCGGGGCAATAA
Upstream 100 bases:
>100_bases ATTTCAGGCCAAAATTCGCCCGCTGCTGGGCGAAGCGGACGCCTGAGCTTTGGCTGAAAATAGCCGCAATGTTGAACCCC TAGCATATAAAGAGGTAACT
Downstream 100 bases:
>100_bases GTTAGATGGCGCTTGGGGGAAGCAAAATCACAGATAAGCCACAGACTGCAAGCCGCGCAGGGCTCAGGCTGGCCCTATGG CTGCTCTTGCTCGCCGCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: Signal Peptide Protein; Outer-Membrane Lipoprotein Carrier Protein; Outer Membrane Protein; Outer Membrane Lipocarrier Protein LolA Family Protein; Exported Lipoprotein; Secreted Protein
Number of amino acids: Translated: 243; Mature: 242
Protein sequence:
>243_residues MGLIVKFCVGILASMLVWLPAQADEALSQKSMTQNADVNLGALSTALKPQGAVRGEFEQTRTLKALKRPLVSRGSFVFSP DQGLMWAQNQPFENLLILSETRMLSRDSEGLWQQTEVNAKAGPATLMPMLVKAMMGGDMATLERHFSLALSSQENHWQLT LAPKDEDIKALFAAIELEGSFIGDAGTTQQTGTQTRTDKASTNRLKLISPNGDVSDIRFSNQQSGPLSEQELQAFIPQIE SGQ
Sequences:
>Translated_243_residues MGLIVKFCVGILASMLVWLPAQADEALSQKSMTQNADVNLGALSTALKPQGAVRGEFEQTRTLKALKRPLVSRGSFVFSP DQGLMWAQNQPFENLLILSETRMLSRDSEGLWQQTEVNAKAGPATLMPMLVKAMMGGDMATLERHFSLALSSQENHWQLT LAPKDEDIKALFAAIELEGSFIGDAGTTQQTGTQTRTDKASTNRLKLISPNGDVSDIRFSNQQSGPLSEQELQAFIPQIE SGQ >Mature_242_residues GLIVKFCVGILASMLVWLPAQADEALSQKSMTQNADVNLGALSTALKPQGAVRGEFEQTRTLKALKRPLVSRGSFVFSPD QGLMWAQNQPFENLLILSETRMLSRDSEGLWQQTEVNAKAGPATLMPMLVKAMMGGDMATLERHFSLALSSQENHWQLTL APKDEDIKALFAAIELEGSFIGDAGTTQQTGTQTRTDKASTNRLKLISPNGDVSDIRFSNQQSGPLSEQELQAFIPQIES GQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26511; Mature: 26379
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLIVKFCVGILASMLVWLPAQADEALSQKSMTQNADVNLGALSTALKPQGAVRGEFEQT CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHH RTLKALKRPLVSRGSFVFSPDQGLMWAQNQPFENLLILSETRMLSRDSEGLWQQTEVNAK HHHHHHHHHHHHCCCEEECCCCCCEECCCCCHHHEEEEHHHHHHHCCCCCCCHHHCCCCC AGPATLMPMLVKAMMGGDMATLERHFSLALSSQENHWQLTLAPKDEDIKALFAAIELEGS CCCHHHHHHHHHHHHCCCHHHHHHHHHHEECCCCCCEEEEECCCCHHHHHHHHHHHCCCC FIGDAGTTQQTGTQTRTDKASTNRLKLISPNGDVSDIRFSNQQSGPLSEQELQAFIPQIE EECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCHHHHHHHHCCCC SGQ CCC >Mature Secondary Structure GLIVKFCVGILASMLVWLPAQADEALSQKSMTQNADVNLGALSTALKPQGAVRGEFEQT CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHH RTLKALKRPLVSRGSFVFSPDQGLMWAQNQPFENLLILSETRMLSRDSEGLWQQTEVNAK HHHHHHHHHHHHCCCEEECCCCCCEECCCCCHHHEEEEHHHHHHHCCCCCCCHHHCCCCC AGPATLMPMLVKAMMGGDMATLERHFSLALSSQENHWQLTLAPKDEDIKALFAAIELEGS CCCHHHHHHHHHHHHCCCHHHHHHHHHHEECCCCCCEEEEECCCCHHHHHHHHHHHCCCC FIGDAGTTQQTGTQTRTDKASTNRLKLISPNGDVSDIRFSNQQSGPLSEQELQAFIPQIE EECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCHHHHHHHHCCCC SGQ CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA