| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776520
Identifier: 119776520
GI number: 119776520
Start: 4014965
End: 4017364
Strand: Direct
Name: 119776520
Synonym: Sama_3388
Alternate gene names: NA
Gene position: 4014965-4017364 (Clockwise)
Preceding gene: 119776519
Following gene: 119776521
Centisome position: 93.24
GC content: 57.42
Gene sequence:
>2400_bases ATGGCGCTTGGGGGAAGCAAAATCACAGATAAGCCACAGACTGCAAGCCGCGCAGGGCTCAGGCTGGCCCTATGGCTGCT CTTGCTCGCCGCAGCCCTCGTTTTCGGCATTAAGACTCTCAAGCACCGCGATGTGGTTGAAACCGACATTCTGGCCATGC TGCCCCACTTGCAGCAGGATGCCCTCACCAGCCGCGCGCTGGACAGTCTCGAAAGTCGTCTGGCTAACGAAAGCTATCTG GTGCTGACGGGGAAAGACAAGGCCGCAACCATCGAAGCCGCCAAGGGCATGATGGCCGAACTTGCCAGTTCCCCCGCATT CGTATCGGTTCGCAGCGGCAGCGAACTCGATCCCAAAGAGATTTACCGGCTCTACTTTCCGGCCCGCTTCAACCTGCTGA CCGAATCACAACGCTCACTGCTGGAAAACGGCAAACTCGATGTACTCATCAAGCAAGCGAAAATTGCCCTCTACAGCGCT TTTGGTTTTGCCAACAGTGAACTTATCAGCGAAGACCCCTTGTTACTGTTTCCGGCGCTGATGCAAAGCTTTGGCAAAGG CCACCGCCTCGGTGAGGAAGGTGGCATCTTGCTTGGCAACTCAGATGGCCAAACCGCCGCAATCATCATGGCCAAGGGCA AAGACAGCGTATTCAGCCCCAAGGCGCAGGAAGCCCAAATCAGTGCCATCAATGCCGCCTTCACCAAGGTAAACCTGGGC AAGCAACTGAGCCTGCTAAAGGCCGGTGCCCTGTTTCATGCACTTGAGGCCACTCAAAGCGCCAAGGCAGAAGTATCACT GATTGGCTCACTGTCGCTTGCGGGCGTGGTAGTGCTGGTGCTTTTGAGCTTCCGTTCGCTGATGCCGCTTTTGATGGCAA GCCTTACCCTCGCCAGTGCTATGGTGAGCGCCAGCCTGTTCACCATCCTCATTTTCGGCAAGTTACACCTGCTCACTCTG GTGTTTGGCACTTCTCTGATTGGCATTGCCATCGACTACAGTTTCCATTTTTATGCCGAGCGCAGTGGCCGTGATGAGAG CGCCAGCCAAACACTGAGCCGCATCTTGCCCGCACTGACGCTGGCCCTTGCTACCAGCGTGCTCGCCTATCTGGCGCTGG GCTTCACTCCCTTCCCGGGGATGCAGCAGGTAGCGGCCTTTTGTGGCGGCGGCCTGATTGGCGCATACCTCACGCTGTAT CTTGCTTACCCCATGCTGGCAGACAGCCGCATTCAGGCCGCAAGCGCGGCCATCACCCTGGCCAGCCGCTTTCTTACCCC GTTCGAAGCCGCAGGCTCCAAAGCCTTGGTGATTGGCAGCCTGACAGTGCTCTTGGTGTGCATCCCTGGACTTGGCCAAC TGGACAGCCGCGACGATATCCGCAGCCTGCAACAGGGCTCGGCAGCACTGATGGCTGAAGAAGCTAACGTGAGAACCTTG CTCTCGGGTGGGGTGGATAATCAGTTTCTGCTGGTACGGGCAGAGTCGATGCAGACGCTGCTCGCAAGACTCGAAGCCCT TGCGCCTGTACTCGCAAAAGCCGAAAAAGACCAACTGCTGCAAAGCCATGTGAACTTTGCCGATTACCTGCCATCCCAGG CGCGGCAGATGGCCGACCATAACCTGCAACAGCAAATCTATGGTCATGAACTGGGTGAAATACTCGCCCGCTTGGGGCTG GAGCCTGAACTCGAACCTGATCTCAGAGCCAAATACCAGGCCGGTGCACAAACGCCCATCGAAGCGGATGCCTTTTTTGA CACCCGGCTTGGGGCAAACCTCAAGCCACTGCTGCTTGAGCCCACGGCTAACGAGGCCAACCATCCAGAATCAACTGCCC GGGAATGGGGCGCCATGGTGCTGCTTGGTGGCATTCAGAACTTACCGGCACTTAACCAAGCGGTAGCGACTTTGCCGGGG GTAACTCTGGTGGATAAGGTGGGCGACATCTCCAAACTGATGGGAGAGTACCGCCACACCACCCTGTGGCTGCTGGTGCT GGCGCTGCTTATTGCCTTTGGAGTCTTTGCCCTGCGTCACCCATGGAAACTTGCCGCCGCCATGGTGGCAGTACCGGCGC TGGCGGCACTGCTCAGCTTGTCACTGCTGGGGCTGCTGGGGTCGCCACTGACTTTATTCCATGCGCTGGCGCTGCTTTTG GTATTCGGCATTGGCGTTGATTACAGCCTGTTTTTCGCCAAGGATGAAAACCGGGAGCATGGCCACAGAGTTATGCTGGC TGTGCTGCTGTCAGCCAGCTCCACCACCCTCGCCTTTGGTCTGCTGGCGCTCAGTAACACCCCGGCAATACACTATTTTG GCCTCACGCTGGCCCTCGGGATTGGCTTTACCCTGCTGCTCTCGCCCCTTATTCACACTTTCAAAAGGAAACTGAAGTAG
Upstream 100 bases:
>100_bases ATGTGAGCGATATCCGCTTCAGCAACCAGCAAAGCGGGCCGCTGTCGGAGCAAGAACTGCAGGCCTTTATCCCGCAAATT GAGTCGGGGCAATAAGTTAG
Downstream 100 bases:
>100_bases ATGCACTCTGGAAATAGCAAGCCCAACGATATGGCGGTGGATGTGGTGATTATAGGGGCTGGTCCCTCCGGCGCTATAGC CGCCAGCCTGCTGCACAGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 799; Mature: 798
Protein sequence:
>799_residues MALGGSKITDKPQTASRAGLRLALWLLLLAAALVFGIKTLKHRDVVETDILAMLPHLQQDALTSRALDSLESRLANESYL VLTGKDKAATIEAAKGMMAELASSPAFVSVRSGSELDPKEIYRLYFPARFNLLTESQRSLLENGKLDVLIKQAKIALYSA FGFANSELISEDPLLLFPALMQSFGKGHRLGEEGGILLGNSDGQTAAIIMAKGKDSVFSPKAQEAQISAINAAFTKVNLG KQLSLLKAGALFHALEATQSAKAEVSLIGSLSLAGVVVLVLLSFRSLMPLLMASLTLASAMVSASLFTILIFGKLHLLTL VFGTSLIGIAIDYSFHFYAERSGRDESASQTLSRILPALTLALATSVLAYLALGFTPFPGMQQVAAFCGGGLIGAYLTLY LAYPMLADSRIQAASAAITLASRFLTPFEAAGSKALVIGSLTVLLVCIPGLGQLDSRDDIRSLQQGSAALMAEEANVRTL LSGGVDNQFLLVRAESMQTLLARLEALAPVLAKAEKDQLLQSHVNFADYLPSQARQMADHNLQQQIYGHELGEILARLGL EPELEPDLRAKYQAGAQTPIEADAFFDTRLGANLKPLLLEPTANEANHPESTAREWGAMVLLGGIQNLPALNQAVATLPG VTLVDKVGDISKLMGEYRHTTLWLLVLALLIAFGVFALRHPWKLAAAMVAVPALAALLSLSLLGLLGSPLTLFHALALLL VFGIGVDYSLFFAKDENREHGHRVMLAVLLSASSTTLAFGLLALSNTPAIHYFGLTLALGIGFTLLLSPLIHTFKRKLK
Sequences:
>Translated_799_residues MALGGSKITDKPQTASRAGLRLALWLLLLAAALVFGIKTLKHRDVVETDILAMLPHLQQDALTSRALDSLESRLANESYL VLTGKDKAATIEAAKGMMAELASSPAFVSVRSGSELDPKEIYRLYFPARFNLLTESQRSLLENGKLDVLIKQAKIALYSA FGFANSELISEDPLLLFPALMQSFGKGHRLGEEGGILLGNSDGQTAAIIMAKGKDSVFSPKAQEAQISAINAAFTKVNLG KQLSLLKAGALFHALEATQSAKAEVSLIGSLSLAGVVVLVLLSFRSLMPLLMASLTLASAMVSASLFTILIFGKLHLLTL VFGTSLIGIAIDYSFHFYAERSGRDESASQTLSRILPALTLALATSVLAYLALGFTPFPGMQQVAAFCGGGLIGAYLTLY LAYPMLADSRIQAASAAITLASRFLTPFEAAGSKALVIGSLTVLLVCIPGLGQLDSRDDIRSLQQGSAALMAEEANVRTL LSGGVDNQFLLVRAESMQTLLARLEALAPVLAKAEKDQLLQSHVNFADYLPSQARQMADHNLQQQIYGHELGEILARLGL EPELEPDLRAKYQAGAQTPIEADAFFDTRLGANLKPLLLEPTANEANHPESTAREWGAMVLLGGIQNLPALNQAVATLPG VTLVDKVGDISKLMGEYRHTTLWLLVLALLIAFGVFALRHPWKLAAAMVAVPALAALLSLSLLGLLGSPLTLFHALALLL VFGIGVDYSLFFAKDENREHGHRVMLAVLLSASSTTLAFGLLALSNTPAIHYFGLTLALGIGFTLLLSPLIHTFKRKLK >Mature_798_residues ALGGSKITDKPQTASRAGLRLALWLLLLAAALVFGIKTLKHRDVVETDILAMLPHLQQDALTSRALDSLESRLANESYLV LTGKDKAATIEAAKGMMAELASSPAFVSVRSGSELDPKEIYRLYFPARFNLLTESQRSLLENGKLDVLIKQAKIALYSAF GFANSELISEDPLLLFPALMQSFGKGHRLGEEGGILLGNSDGQTAAIIMAKGKDSVFSPKAQEAQISAINAAFTKVNLGK QLSLLKAGALFHALEATQSAKAEVSLIGSLSLAGVVVLVLLSFRSLMPLLMASLTLASAMVSASLFTILIFGKLHLLTLV FGTSLIGIAIDYSFHFYAERSGRDESASQTLSRILPALTLALATSVLAYLALGFTPFPGMQQVAAFCGGGLIGAYLTLYL AYPMLADSRIQAASAAITLASRFLTPFEAAGSKALVIGSLTVLLVCIPGLGQLDSRDDIRSLQQGSAALMAEEANVRTLL SGGVDNQFLLVRAESMQTLLARLEALAPVLAKAEKDQLLQSHVNFADYLPSQARQMADHNLQQQIYGHELGEILARLGLE PELEPDLRAKYQAGAQTPIEADAFFDTRLGANLKPLLLEPTANEANHPESTAREWGAMVLLGGIQNLPALNQAVATLPGV TLVDKVGDISKLMGEYRHTTLWLLVLALLIAFGVFALRHPWKLAAAMVAVPALAALLSLSLLGLLGSPLTLFHALALLLV FGIGVDYSLFFAKDENREHGHRVMLAVLLSASSTTLAFGLLALSNTPAIHYFGLTLALGIGFTLLLSPLIHTFKRKLK
Specific function: Unknown
COG id: COG4258
COG function: function code R; Predicted exporter
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 85336; Mature: 85205
Theoretical pI: Translated: 7.33; Mature: 7.33
Prosite motif: PS50156 SSD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALGGSKITDKPQTASRAGLRLALWLLLLAAALVFGIKTLKHRDVVETDILAMLPHLQQD CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH ALTSRALDSLESRLANESYLVLTGKDKAATIEAAKGMMAELASSPAFVSVRSGSELDPKE HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHH IYRLYFPARFNLLTESQRSLLENGKLDVLIKQAKIALYSAFGFANSELISEDPLLLFPAL HHHHHCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH MQSFGKGHRLGEEGGILLGNSDGQTAAIIMAKGKDSVFSPKAQEAQISAINAAFTKVNLG HHHCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC KQLSLLKAGALFHALEATQSAKAEVSLIGSLSLAGVVVLVLLSFRSLMPLLMASLTLASA HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MVSASLFTILIFGKLHLLTLVFGTSLIGIAIDYSFHFYAERSGRDESASQTLSRILPALT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCHHHHHHHHHHHHHHH LALATSVLAYLALGFTPFPGMQQVAAFCGGGLIGAYLTLYLAYPMLADSRIQAASAAITL HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH ASRFLTPFEAAGSKALVIGSLTVLLVCIPGLGQLDSRDDIRSLQQGSAALMAEEANVRTL HHHHCCHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHEEECCCCHHHH LSGGVDNQFLLVRAESMQTLLARLEALAPVLAKAEKDQLLQSHVNFADYLPSQARQMADH HCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHH NLQQQIYGHELGEILARLGLEPELEPDLRAKYQAGAQTPIEADAFFDTRLGANLKPLLLE HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCEEEC PTANEANHPESTAREWGAMVLLGGIQNLPALNQAVATLPGVTLVDKVGDISKLMGEYRHT CCCCCCCCCHHHHHHHCCEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH TLWLLVLALLIAFGVFALRHPWKLAAAMVAVPALAALLSLSLLGLLGSPLTLFHALALLL HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH VFGIGVDYSLFFAKDENREHGHRVMLAVLLSASSTTLAFGLLALSNTPAIHYFGLTLALG HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHH IGFTLLLSPLIHTFKRKLK HHHHHHHHHHHHHHHHHCC >Mature Secondary Structure ALGGSKITDKPQTASRAGLRLALWLLLLAAALVFGIKTLKHRDVVETDILAMLPHLQQD CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH ALTSRALDSLESRLANESYLVLTGKDKAATIEAAKGMMAELASSPAFVSVRSGSELDPKE HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHH IYRLYFPARFNLLTESQRSLLENGKLDVLIKQAKIALYSAFGFANSELISEDPLLLFPAL HHHHHCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH MQSFGKGHRLGEEGGILLGNSDGQTAAIIMAKGKDSVFSPKAQEAQISAINAAFTKVNLG HHHCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC KQLSLLKAGALFHALEATQSAKAEVSLIGSLSLAGVVVLVLLSFRSLMPLLMASLTLASA HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MVSASLFTILIFGKLHLLTLVFGTSLIGIAIDYSFHFYAERSGRDESASQTLSRILPALT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCHHHHHHHHHHHHHHH LALATSVLAYLALGFTPFPGMQQVAAFCGGGLIGAYLTLYLAYPMLADSRIQAASAAITL HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH ASRFLTPFEAAGSKALVIGSLTVLLVCIPGLGQLDSRDDIRSLQQGSAALMAEEANVRTL HHHHCCHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHEEECCCCHHHH LSGGVDNQFLLVRAESMQTLLARLEALAPVLAKAEKDQLLQSHVNFADYLPSQARQMADH HCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHH NLQQQIYGHELGEILARLGLEPELEPDLRAKYQAGAQTPIEADAFFDTRLGANLKPLLLE HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCEEEC PTANEANHPESTAREWGAMVLLGGIQNLPALNQAVATLPGVTLVDKVGDISKLMGEYRHT CCCCCCCCCHHHHHHHCCEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH TLWLLVLALLIAFGVFALRHPWKLAAAMVAVPALAALLSLSLLGLLGSPLTLFHALALLL HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH VFGIGVDYSLFFAKDENREHGHRVMLAVLLSASSTTLAFGLLALSNTPAIHYFGLTLALG HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHH IGFTLLLSPLIHTFKRKLK HHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA