Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119776520

Identifier: 119776520

GI number: 119776520

Start: 4014965

End: 4017364

Strand: Direct

Name: 119776520

Synonym: Sama_3388

Alternate gene names: NA

Gene position: 4014965-4017364 (Clockwise)

Preceding gene: 119776519

Following gene: 119776521

Centisome position: 93.24

GC content: 57.42

Gene sequence:

>2400_bases
ATGGCGCTTGGGGGAAGCAAAATCACAGATAAGCCACAGACTGCAAGCCGCGCAGGGCTCAGGCTGGCCCTATGGCTGCT
CTTGCTCGCCGCAGCCCTCGTTTTCGGCATTAAGACTCTCAAGCACCGCGATGTGGTTGAAACCGACATTCTGGCCATGC
TGCCCCACTTGCAGCAGGATGCCCTCACCAGCCGCGCGCTGGACAGTCTCGAAAGTCGTCTGGCTAACGAAAGCTATCTG
GTGCTGACGGGGAAAGACAAGGCCGCAACCATCGAAGCCGCCAAGGGCATGATGGCCGAACTTGCCAGTTCCCCCGCATT
CGTATCGGTTCGCAGCGGCAGCGAACTCGATCCCAAAGAGATTTACCGGCTCTACTTTCCGGCCCGCTTCAACCTGCTGA
CCGAATCACAACGCTCACTGCTGGAAAACGGCAAACTCGATGTACTCATCAAGCAAGCGAAAATTGCCCTCTACAGCGCT
TTTGGTTTTGCCAACAGTGAACTTATCAGCGAAGACCCCTTGTTACTGTTTCCGGCGCTGATGCAAAGCTTTGGCAAAGG
CCACCGCCTCGGTGAGGAAGGTGGCATCTTGCTTGGCAACTCAGATGGCCAAACCGCCGCAATCATCATGGCCAAGGGCA
AAGACAGCGTATTCAGCCCCAAGGCGCAGGAAGCCCAAATCAGTGCCATCAATGCCGCCTTCACCAAGGTAAACCTGGGC
AAGCAACTGAGCCTGCTAAAGGCCGGTGCCCTGTTTCATGCACTTGAGGCCACTCAAAGCGCCAAGGCAGAAGTATCACT
GATTGGCTCACTGTCGCTTGCGGGCGTGGTAGTGCTGGTGCTTTTGAGCTTCCGTTCGCTGATGCCGCTTTTGATGGCAA
GCCTTACCCTCGCCAGTGCTATGGTGAGCGCCAGCCTGTTCACCATCCTCATTTTCGGCAAGTTACACCTGCTCACTCTG
GTGTTTGGCACTTCTCTGATTGGCATTGCCATCGACTACAGTTTCCATTTTTATGCCGAGCGCAGTGGCCGTGATGAGAG
CGCCAGCCAAACACTGAGCCGCATCTTGCCCGCACTGACGCTGGCCCTTGCTACCAGCGTGCTCGCCTATCTGGCGCTGG
GCTTCACTCCCTTCCCGGGGATGCAGCAGGTAGCGGCCTTTTGTGGCGGCGGCCTGATTGGCGCATACCTCACGCTGTAT
CTTGCTTACCCCATGCTGGCAGACAGCCGCATTCAGGCCGCAAGCGCGGCCATCACCCTGGCCAGCCGCTTTCTTACCCC
GTTCGAAGCCGCAGGCTCCAAAGCCTTGGTGATTGGCAGCCTGACAGTGCTCTTGGTGTGCATCCCTGGACTTGGCCAAC
TGGACAGCCGCGACGATATCCGCAGCCTGCAACAGGGCTCGGCAGCACTGATGGCTGAAGAAGCTAACGTGAGAACCTTG
CTCTCGGGTGGGGTGGATAATCAGTTTCTGCTGGTACGGGCAGAGTCGATGCAGACGCTGCTCGCAAGACTCGAAGCCCT
TGCGCCTGTACTCGCAAAAGCCGAAAAAGACCAACTGCTGCAAAGCCATGTGAACTTTGCCGATTACCTGCCATCCCAGG
CGCGGCAGATGGCCGACCATAACCTGCAACAGCAAATCTATGGTCATGAACTGGGTGAAATACTCGCCCGCTTGGGGCTG
GAGCCTGAACTCGAACCTGATCTCAGAGCCAAATACCAGGCCGGTGCACAAACGCCCATCGAAGCGGATGCCTTTTTTGA
CACCCGGCTTGGGGCAAACCTCAAGCCACTGCTGCTTGAGCCCACGGCTAACGAGGCCAACCATCCAGAATCAACTGCCC
GGGAATGGGGCGCCATGGTGCTGCTTGGTGGCATTCAGAACTTACCGGCACTTAACCAAGCGGTAGCGACTTTGCCGGGG
GTAACTCTGGTGGATAAGGTGGGCGACATCTCCAAACTGATGGGAGAGTACCGCCACACCACCCTGTGGCTGCTGGTGCT
GGCGCTGCTTATTGCCTTTGGAGTCTTTGCCCTGCGTCACCCATGGAAACTTGCCGCCGCCATGGTGGCAGTACCGGCGC
TGGCGGCACTGCTCAGCTTGTCACTGCTGGGGCTGCTGGGGTCGCCACTGACTTTATTCCATGCGCTGGCGCTGCTTTTG
GTATTCGGCATTGGCGTTGATTACAGCCTGTTTTTCGCCAAGGATGAAAACCGGGAGCATGGCCACAGAGTTATGCTGGC
TGTGCTGCTGTCAGCCAGCTCCACCACCCTCGCCTTTGGTCTGCTGGCGCTCAGTAACACCCCGGCAATACACTATTTTG
GCCTCACGCTGGCCCTCGGGATTGGCTTTACCCTGCTGCTCTCGCCCCTTATTCACACTTTCAAAAGGAAACTGAAGTAG

Upstream 100 bases:

>100_bases
ATGTGAGCGATATCCGCTTCAGCAACCAGCAAAGCGGGCCGCTGTCGGAGCAAGAACTGCAGGCCTTTATCCCGCAAATT
GAGTCGGGGCAATAAGTTAG

Downstream 100 bases:

>100_bases
ATGCACTCTGGAAATAGCAAGCCCAACGATATGGCGGTGGATGTGGTGATTATAGGGGCTGGTCCCTCCGGCGCTATAGC
CGCCAGCCTGCTGCACAGGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 799; Mature: 798

Protein sequence:

>799_residues
MALGGSKITDKPQTASRAGLRLALWLLLLAAALVFGIKTLKHRDVVETDILAMLPHLQQDALTSRALDSLESRLANESYL
VLTGKDKAATIEAAKGMMAELASSPAFVSVRSGSELDPKEIYRLYFPARFNLLTESQRSLLENGKLDVLIKQAKIALYSA
FGFANSELISEDPLLLFPALMQSFGKGHRLGEEGGILLGNSDGQTAAIIMAKGKDSVFSPKAQEAQISAINAAFTKVNLG
KQLSLLKAGALFHALEATQSAKAEVSLIGSLSLAGVVVLVLLSFRSLMPLLMASLTLASAMVSASLFTILIFGKLHLLTL
VFGTSLIGIAIDYSFHFYAERSGRDESASQTLSRILPALTLALATSVLAYLALGFTPFPGMQQVAAFCGGGLIGAYLTLY
LAYPMLADSRIQAASAAITLASRFLTPFEAAGSKALVIGSLTVLLVCIPGLGQLDSRDDIRSLQQGSAALMAEEANVRTL
LSGGVDNQFLLVRAESMQTLLARLEALAPVLAKAEKDQLLQSHVNFADYLPSQARQMADHNLQQQIYGHELGEILARLGL
EPELEPDLRAKYQAGAQTPIEADAFFDTRLGANLKPLLLEPTANEANHPESTAREWGAMVLLGGIQNLPALNQAVATLPG
VTLVDKVGDISKLMGEYRHTTLWLLVLALLIAFGVFALRHPWKLAAAMVAVPALAALLSLSLLGLLGSPLTLFHALALLL
VFGIGVDYSLFFAKDENREHGHRVMLAVLLSASSTTLAFGLLALSNTPAIHYFGLTLALGIGFTLLLSPLIHTFKRKLK

Sequences:

>Translated_799_residues
MALGGSKITDKPQTASRAGLRLALWLLLLAAALVFGIKTLKHRDVVETDILAMLPHLQQDALTSRALDSLESRLANESYL
VLTGKDKAATIEAAKGMMAELASSPAFVSVRSGSELDPKEIYRLYFPARFNLLTESQRSLLENGKLDVLIKQAKIALYSA
FGFANSELISEDPLLLFPALMQSFGKGHRLGEEGGILLGNSDGQTAAIIMAKGKDSVFSPKAQEAQISAINAAFTKVNLG
KQLSLLKAGALFHALEATQSAKAEVSLIGSLSLAGVVVLVLLSFRSLMPLLMASLTLASAMVSASLFTILIFGKLHLLTL
VFGTSLIGIAIDYSFHFYAERSGRDESASQTLSRILPALTLALATSVLAYLALGFTPFPGMQQVAAFCGGGLIGAYLTLY
LAYPMLADSRIQAASAAITLASRFLTPFEAAGSKALVIGSLTVLLVCIPGLGQLDSRDDIRSLQQGSAALMAEEANVRTL
LSGGVDNQFLLVRAESMQTLLARLEALAPVLAKAEKDQLLQSHVNFADYLPSQARQMADHNLQQQIYGHELGEILARLGL
EPELEPDLRAKYQAGAQTPIEADAFFDTRLGANLKPLLLEPTANEANHPESTAREWGAMVLLGGIQNLPALNQAVATLPG
VTLVDKVGDISKLMGEYRHTTLWLLVLALLIAFGVFALRHPWKLAAAMVAVPALAALLSLSLLGLLGSPLTLFHALALLL
VFGIGVDYSLFFAKDENREHGHRVMLAVLLSASSTTLAFGLLALSNTPAIHYFGLTLALGIGFTLLLSPLIHTFKRKLK
>Mature_798_residues
ALGGSKITDKPQTASRAGLRLALWLLLLAAALVFGIKTLKHRDVVETDILAMLPHLQQDALTSRALDSLESRLANESYLV
LTGKDKAATIEAAKGMMAELASSPAFVSVRSGSELDPKEIYRLYFPARFNLLTESQRSLLENGKLDVLIKQAKIALYSAF
GFANSELISEDPLLLFPALMQSFGKGHRLGEEGGILLGNSDGQTAAIIMAKGKDSVFSPKAQEAQISAINAAFTKVNLGK
QLSLLKAGALFHALEATQSAKAEVSLIGSLSLAGVVVLVLLSFRSLMPLLMASLTLASAMVSASLFTILIFGKLHLLTLV
FGTSLIGIAIDYSFHFYAERSGRDESASQTLSRILPALTLALATSVLAYLALGFTPFPGMQQVAAFCGGGLIGAYLTLYL
AYPMLADSRIQAASAAITLASRFLTPFEAAGSKALVIGSLTVLLVCIPGLGQLDSRDDIRSLQQGSAALMAEEANVRTLL
SGGVDNQFLLVRAESMQTLLARLEALAPVLAKAEKDQLLQSHVNFADYLPSQARQMADHNLQQQIYGHELGEILARLGLE
PELEPDLRAKYQAGAQTPIEADAFFDTRLGANLKPLLLEPTANEANHPESTAREWGAMVLLGGIQNLPALNQAVATLPGV
TLVDKVGDISKLMGEYRHTTLWLLVLALLIAFGVFALRHPWKLAAAMVAVPALAALLSLSLLGLLGSPLTLFHALALLLV
FGIGVDYSLFFAKDENREHGHRVMLAVLLSASSTTLAFGLLALSNTPAIHYFGLTLALGIGFTLLLSPLIHTFKRKLK

Specific function: Unknown

COG id: COG4258

COG function: function code R; Predicted exporter

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 85336; Mature: 85205

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS50156 SSD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALGGSKITDKPQTASRAGLRLALWLLLLAAALVFGIKTLKHRDVVETDILAMLPHLQQD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
ALTSRALDSLESRLANESYLVLTGKDKAATIEAAKGMMAELASSPAFVSVRSGSELDPKE
HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHH
IYRLYFPARFNLLTESQRSLLENGKLDVLIKQAKIALYSAFGFANSELISEDPLLLFPAL
HHHHHCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
MQSFGKGHRLGEEGGILLGNSDGQTAAIIMAKGKDSVFSPKAQEAQISAINAAFTKVNLG
HHHCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC
KQLSLLKAGALFHALEATQSAKAEVSLIGSLSLAGVVVLVLLSFRSLMPLLMASLTLASA
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MVSASLFTILIFGKLHLLTLVFGTSLIGIAIDYSFHFYAERSGRDESASQTLSRILPALT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
LALATSVLAYLALGFTPFPGMQQVAAFCGGGLIGAYLTLYLAYPMLADSRIQAASAAITL
HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
ASRFLTPFEAAGSKALVIGSLTVLLVCIPGLGQLDSRDDIRSLQQGSAALMAEEANVRTL
HHHHCCHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHEEECCCCHHHH
LSGGVDNQFLLVRAESMQTLLARLEALAPVLAKAEKDQLLQSHVNFADYLPSQARQMADH
HCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHH
NLQQQIYGHELGEILARLGLEPELEPDLRAKYQAGAQTPIEADAFFDTRLGANLKPLLLE
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCEEEC
PTANEANHPESTAREWGAMVLLGGIQNLPALNQAVATLPGVTLVDKVGDISKLMGEYRHT
CCCCCCCCCHHHHHHHCCEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
TLWLLVLALLIAFGVFALRHPWKLAAAMVAVPALAALLSLSLLGLLGSPLTLFHALALLL
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
VFGIGVDYSLFFAKDENREHGHRVMLAVLLSASSTTLAFGLLALSNTPAIHYFGLTLALG
HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
IGFTLLLSPLIHTFKRKLK
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ALGGSKITDKPQTASRAGLRLALWLLLLAAALVFGIKTLKHRDVVETDILAMLPHLQQD
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
ALTSRALDSLESRLANESYLVLTGKDKAATIEAAKGMMAELASSPAFVSVRSGSELDPKE
HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHH
IYRLYFPARFNLLTESQRSLLENGKLDVLIKQAKIALYSAFGFANSELISEDPLLLFPAL
HHHHHCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
MQSFGKGHRLGEEGGILLGNSDGQTAAIIMAKGKDSVFSPKAQEAQISAINAAFTKVNLG
HHHCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC
KQLSLLKAGALFHALEATQSAKAEVSLIGSLSLAGVVVLVLLSFRSLMPLLMASLTLASA
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MVSASLFTILIFGKLHLLTLVFGTSLIGIAIDYSFHFYAERSGRDESASQTLSRILPALT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
LALATSVLAYLALGFTPFPGMQQVAAFCGGGLIGAYLTLYLAYPMLADSRIQAASAAITL
HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
ASRFLTPFEAAGSKALVIGSLTVLLVCIPGLGQLDSRDDIRSLQQGSAALMAEEANVRTL
HHHHCCHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHEEECCCCHHHH
LSGGVDNQFLLVRAESMQTLLARLEALAPVLAKAEKDQLLQSHVNFADYLPSQARQMADH
HCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHH
NLQQQIYGHELGEILARLGLEPELEPDLRAKYQAGAQTPIEADAFFDTRLGANLKPLLLE
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCEEEC
PTANEANHPESTAREWGAMVLLGGIQNLPALNQAVATLPGVTLVDKVGDISKLMGEYRHT
CCCCCCCCCHHHHHHHCCEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
TLWLLVLALLIAFGVFALRHPWKLAAAMVAVPALAALLSLSLLGLLGSPLTLFHALALLL
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
VFGIGVDYSLFFAKDENREHGHRVMLAVLLSASSTTLAFGLLALSNTPAIHYFGLTLALG
HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
IGFTLLLSPLIHTFKRKLK
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA