Click here to switch to the map view.

The map label for this gene is frdC [H]

Identifier: 119776354

GI number: 119776354

Start: 3815047

End: 3815778

Strand: Reverse

Name: frdC [H]

Synonym: Sama_3222

Alternate gene names: 119776354

Gene position: 3815778-3815047 (Counterclockwise)

Preceding gene: 119776359

Following gene: 119776353

Centisome position: 88.61

GC content: 57.24

Gene sequence:

>732_bases
ATGAACAGCGCACGCACACTGACAGAACATACATTAAATCCACGCACGGCAGGGCATCCCTGGTCGGCGCGTGCAGACAG
GTTGCAGAGCCTCACGGGACTCATGCTGGGGGGCTTTTTGCTGCTGCATATGCACTTTGAGTCGAGCATTCTGCTGGGCA
AAGAGGTGTTTTATCAGGTGGTGCAGCTGCTTGAAGGGGGCATGTTCTCAAGCACCGGCCACGGCTTTCCCTGGGTGACC
AAGGCGTTCTCTGTGCTGGTACTGGTTGTGGTGTGCCTGCACGCGGCACTGGCGCTGCGCCGTTTCCCCACTCAGCTTGG
TCAGTGGCGCCTGCTGCGCTCCCATCTGGGCTCCATCGCCCACAAGGATACCCATGCCTGGTTTTGGCAGCTCATCACAG
GTTTTGTGCTGTTTTTCCTGGTGCCGGTTCACTTATTTACCATGATTCTTAACCCCGAGATTGGCCCGCATCTGTCGGCG
GAGCGGGTGTTTCATAACAATGCCTGGGTGCTCTATGCCCTGTTGCTGCCAGCGGTGGTGGTGCACGCCATGATTGGACT
CTACCGGGTATCGGTGAAGTGGGGCTGGGTGGTGCACCGCAAGCCGCTTCGCAAGGTGGTCAAGCTGCTTATCGTCTATC
TTTTGTGCTTGGGCACATCGAGCCTGGTGGCTTATATGTTTATCGGCAGTAGCCTGACATTGCCGGTAACGCCGTTTTCA
CCGGCGGGTTAA

Upstream 100 bases:

>100_bases
CCTCACGCTTTGCTTCTGCCCGTCTCGCCACAGTTTTTACAGCTGATATTGTGTTCTCCTCGGTAATGTCGCCCGGGCGC
GGCACAGGGGAGAGGCAAGC

Downstream 100 bases:

>100_bases
GCCGAACTGGCATGACCTCTGCTTTAAAGAGTGATGCAGATCCTGATTCAGTAACCGATGAATTAACGAGCATTGTGTTG
ATTTGCGTCAGGGTTTAGCT

Product: fumarate reductase cytochrome b-556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MNSARTLTEHTLNPRTAGHPWSARADRLQSLTGLMLGGFLLLHMHFESSILLGKEVFYQVVQLLEGGMFSSTGHGFPWVT
KAFSVLVLVVVCLHAALALRRFPTQLGQWRLLRSHLGSIAHKDTHAWFWQLITGFVLFFLVPVHLFTMILNPEIGPHLSA
ERVFHNNAWVLYALLLPAVVVHAMIGLYRVSVKWGWVVHRKPLRKVVKLLIVYLLCLGTSSLVAYMFIGSSLTLPVTPFS
PAG

Sequences:

>Translated_243_residues
MNSARTLTEHTLNPRTAGHPWSARADRLQSLTGLMLGGFLLLHMHFESSILLGKEVFYQVVQLLEGGMFSSTGHGFPWVT
KAFSVLVLVVVCLHAALALRRFPTQLGQWRLLRSHLGSIAHKDTHAWFWQLITGFVLFFLVPVHLFTMILNPEIGPHLSA
ERVFHNNAWVLYALLLPAVVVHAMIGLYRVSVKWGWVVHRKPLRKVVKLLIVYLLCLGTSSLVAYMFIGSSLTLPVTPFS
PAG
>Mature_243_residues
MNSARTLTEHTLNPRTAGHPWSARADRLQSLTGLMLGGFLLLHMHFESSILLGKEVFYQVVQLLEGGMFSSTGHGFPWVT
KAFSVLVLVVVCLHAALALRRFPTQLGQWRLLRSHLGSIAHKDTHAWFWQLITGFVLFFLVPVHLFTMILNPEIGPHLSA
ERVFHNNAWVLYALLLPAVVVHAMIGLYRVSVKWGWVVHRKPLRKVVKLLIVYLLCLGTSSLVAYMFIGSSLTLPVTPFS
PAG

Specific function: Di-heme cytochrome of the fumarate reductase complex [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004224
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 27224; Mature: 27224

Theoretical pI: Translated: 10.82; Mature: 10.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCC
>Mature Secondary Structure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CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]