Click here to switch to the map view.

The map label for this gene is frdC [H]

Identifier: 119776353

GI number: 119776353

Start: 3814208

End: 3814882

Strand: Reverse

Name: frdC [H]

Synonym: Sama_3221

Alternate gene names: 119776353

Gene position: 3814882-3814208 (Counterclockwise)

Preceding gene: 119776354

Following gene: 119776352

Centisome position: 88.59

GC content: 57.63

Gene sequence:

>675_bases
ATGGCAGGCAAACTGGACATAAGACGCTGGAGCGGCGTGCTGGATTTAGGGCAGAGCGTCAGCGGAGTGGTACTGGCACT
CTTTCTGTGGACCCACTTGTTGTTGGTGTCGTCCATTTTGCTTGGCCCCGAGGCCATGACCTGGGTAGCTCGCAATATGG
AGCTGGCCTTTTTATCTGATGATGGTCATGGCTATCCCTGGGTGGTGAGCCTGATAGCCATAGGTGTGGCGGCCCTGGCG
GCCTTCCATGTGCTGGTGGCCATTCATAAGCTGCCCCTGAGCCTGCGTCAGCAAAAGGCGCTGAAAAGCCAGATGCAGGT
GATCAATCACAGCGATACTCGCCTGTGGAGCTGGCAGGCCGGTACCGGCATTGTGATCTTAATGCTGTTGCCCGTGCACC
TGTGGCTGGTGGGCAGCGCGCCCGAGACCATAGGCCCTGTGGGCAGTGCCCAGCGGATTTGGGGTGAGTATGGATATTTG
ATTTACCTGCCGCTGCTGCTGACAGTCGAGCTGCACGCTGCCATTGGTCTTTACCGGGTGGCGCTGAAATGGGGTGCGGC
GCGGGATCTCAATACCCGGGCAAGATTAAGAACCATCAAGACGGTGCTCAGTGTGCTGTTTGTGGGTATAGGACTGGCGG
CGTTGCTGGCCTTTATTCCCCATACTCCCGTGTAA

Upstream 100 bases:

>100_bases
AACGAGCATTGTGTTGATTTGCGTCAGGGTTTAGCTTGGTTTTGTGAGCGACATTGGCACTCATAACCGACACAAGAATA
ACAGGCAAAGAGGGATGAGC

Downstream 100 bases:

>100_bases
TTCATGAATATTGTTAAAAATAAGGCGGATAACAACCGCTGCTTACGCTGTACTTTGCAAAAGTGTGCCAAGGAGTAAAC
GTGAAACTCATTTATACAGA

Product: fumarate reductase cytochrome subunit B

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MAGKLDIRRWSGVLDLGQSVSGVVLALFLWTHLLLVSSILLGPEAMTWVARNMELAFLSDDGHGYPWVVSLIAIGVAALA
AFHVLVAIHKLPLSLRQQKALKSQMQVINHSDTRLWSWQAGTGIVILMLLPVHLWLVGSAPETIGPVGSAQRIWGEYGYL
IYLPLLLTVELHAAIGLYRVALKWGAARDLNTRARLRTIKTVLSVLFVGIGLAALLAFIPHTPV

Sequences:

>Translated_224_residues
MAGKLDIRRWSGVLDLGQSVSGVVLALFLWTHLLLVSSILLGPEAMTWVARNMELAFLSDDGHGYPWVVSLIAIGVAALA
AFHVLVAIHKLPLSLRQQKALKSQMQVINHSDTRLWSWQAGTGIVILMLLPVHLWLVGSAPETIGPVGSAQRIWGEYGYL
IYLPLLLTVELHAAIGLYRVALKWGAARDLNTRARLRTIKTVLSVLFVGIGLAALLAFIPHTPV
>Mature_223_residues
AGKLDIRRWSGVLDLGQSVSGVVLALFLWTHLLLVSSILLGPEAMTWVARNMELAFLSDDGHGYPWVVSLIAIGVAALAA
FHVLVAIHKLPLSLRQQKALKSQMQVINHSDTRLWSWQAGTGIVILMLLPVHLWLVGSAPETIGPVGSAQRIWGEYGYLI
YLPLLLTVELHAAIGLYRVALKWGAARDLNTRARLRTIKTVLSVLFVGIGLAALLAFIPHTPV

Specific function: Di-heme cytochrome of the fumarate reductase complex [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004224
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 24474; Mature: 24342

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGKLDIRRWSGVLDLGQSVSGVVLALFLWTHLLLVSSILLGPEAMTWVARNMELAFLSD
CCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEEEECC
DGHGYPWVVSLIAIGVAALAAFHVLVAIHKLPLSLRQQKALKSQMQVINHSDTRLWSWQA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEECC
GTGIVILMLLPVHLWLVGSAPETIGPVGSAQRIWGEYGYLIYLPLLLTVELHAAIGLYRV
CCHHHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
ALKWGAARDLNTRARLRTIKTVLSVLFVGIGLAALLAFIPHTPV
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AGKLDIRRWSGVLDLGQSVSGVVLALFLWTHLLLVSSILLGPEAMTWVARNMELAFLSD
CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEEEECC
DGHGYPWVVSLIAIGVAALAAFHVLVAIHKLPLSLRQQKALKSQMQVINHSDTRLWSWQA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEECC
GTGIVILMLLPVHLWLVGSAPETIGPVGSAQRIWGEYGYLIYLPLLLTVELHAAIGLYRV
CCHHHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
ALKWGAARDLNTRARLRTIKTVLSVLFVGIGLAALLAFIPHTPV
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]