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The map label for this gene is cph2 [H]

Identifier: 119776342

GI number: 119776342

Start: 3799098

End: 3800972

Strand: Direct

Name: cph2 [H]

Synonym: Sama_3210

Alternate gene names: 119776342

Gene position: 3799098-3800972 (Clockwise)

Preceding gene: 119776341

Following gene: 119776343

Centisome position: 88.23

GC content: 55.2

Gene sequence:

>1875_bases
ATGGGTAGACTCCTGCTGCTGTTACTCGCACTGGGATATAGTCTGCTGGCGCAGGCCGGCGCCCCTGCTTTGGTATACAC
GCAAGAGTCGGGGGATGTGATAGAACTGACCCCCTGGGTAAGCGCGTTTCAGGCCAGCGAACTTATTGATTACCGAGAAC
TTCCACCCCAGAATGACCCACGCTGGCAACAACTTCCCAAGCAGGGCACCCATGGCATGGGGGCGCAGAATCGCTGGCTC
AGGATAGATATTGATGTCAGAACCCATCCGGGCAGCCGGGTGCTCAGTATCAATAACCCCCTGCTGGATAACTTGCGACT
CTATCATCTGGTCAATGGCAACCTGATGACTGAACACCATTTTGGTGACAGCTTGCCATTTGATGAACGCCTGCTCCTGA
GTACTCAGTTCCTTTACCCGTTGCAGCTGCGGCCATGGGAGCATCACACCCTGCTGCTCCGGGTCGATACCGAAGGTAGC
AGCCATGTGCCCTTGACTCTGATGACGCCCGGTCATCTGAGCCAGATGCTCGAAAGCCGTAATCTGGTTCAGGGTTTCCA
GCTTGGCATCCTCGCAGCCATCGGTCTGTTCAGTTTATTCGTGGCACTGGCCTCAGGCTCCTTCAGCTACAGCTATTACG
CCGCTTATGTGTTGTCCATGACACTCTTGGTTGCCTCCTTGCAAGGGGTGGCATTCCGCTACCTTTGGCCACAATTACCA
GCCATGCAAGCCTGGGTTATCCCGTTCCTGCTACCGCTGGTCATGTGTTTTGCGCTCATGTTTGCCGAAAAGGTATTGCA
ACTTAAATACCTGAATATTCGTATGCTGCGCATTTGTCGCTTCAGCGCCACCTTCAGTCTGTTTCTGGCACTGCTGTCCC
CCTTTATCAGCTACAGCCTGGCGATGTATTGCGACCTGGTCGCCCTGCTGGGTATTGCCGTGGTACTGCTCGCCTTCGCT
CTGGTGCAGGCCCTGCGGGGACAAAAACTCGCCCGCCTTTACTTCGTCGGTTGGATAGTCTTTCTGGCTAGCGTTATTGT
CACCAGCCTGATTTACCTCGGTGCCATCCAAACCACCATGGAACCCCTCAGCCCGGCCATGGCGGGGGTCACCTTTGAAA
TTGTGTTCATGTCGCTGGTACTGGCCATTCGTTACAGTGACGAGCGCAAAGCCAAACAGCGCATACAGCAGGAAGCCCTT
GAGCAGGCCAAGCGTATCCGTGAAGCCCGAGAGGAAGCCCTCAAGGTCGAGGCCGAATCCAACGAGCGCCTGGAAGAGAT
GGTGCAGGAACGCACCCTTGAGCTGGAAATTGTCCTGCGTGAGCTTAATGAGGTGAACCAAAAACTCACCGAACAAACCA
CCATCGACAGCCTCACCGGCGTGAAAAACCGGGCTGCATTCAATAAGCGCTTGCAGGCCGAAGGACGCATAAGCCGACGT
CAGCAAACCCCCATGGCTCTGCTGATGCTGGACATAGATCATTTCAAGAATATCAACGACAAATATGGCCACCTCGCCGG
CGACTACACCCTGAAAGCCATCGCCGATACGCTGAGTGCACAACTCAGGCGCCCAACGGATCTCGTGTCACGTTTTGGGG
GCGAGGAGTTTGCTATCATACTGCCATCCACCGATGCTGAAGGAGCCGTCGCCGTCGCCGAACATATCCGCGAAGCGGTA
GAAGAGCTCACCATCAAGTGGGAGCAATTTATGATCCCGCTGACCGTGAGCATTGGTGTCAGCAGCAATATTATTGAGAG
TGACGAGCATCCGCTGCAGCTGCTTGAGCAGGCGGACAAGGCGCTCTATCAGGCCAAACACGACGGCCGTAACAGGGTGG
GCCTTTTTCAGGACATACCCGTTCCCCATCCATAG

Upstream 100 bases:

>100_bases
ATCGCCAACGAGATAGCCCGCCTTCGAGGGGAGGAGCCGGACGACTTTTCCCGGCAGGTATACCACAACAGCCTCACATT
CTTTGGCTTGGACAGCGCCC

Downstream 100 bases:

>100_bases
CCCAGGAGACGATAGTGAACATCATCACCAGTGCCTTCCCACAACGCAGAATGCGCCGTATGCGCAAACACGAGTTCAGC
CGTCGCCTGATGGCCGAAAA

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 624; Mature: 623

Protein sequence:

>624_residues
MGRLLLLLLALGYSLLAQAGAPALVYTQESGDVIELTPWVSAFQASELIDYRELPPQNDPRWQQLPKQGTHGMGAQNRWL
RIDIDVRTHPGSRVLSINNPLLDNLRLYHLVNGNLMTEHHFGDSLPFDERLLLSTQFLYPLQLRPWEHHTLLLRVDTEGS
SHVPLTLMTPGHLSQMLESRNLVQGFQLGILAAIGLFSLFVALASGSFSYSYYAAYVLSMTLLVASLQGVAFRYLWPQLP
AMQAWVIPFLLPLVMCFALMFAEKVLQLKYLNIRMLRICRFSATFSLFLALLSPFISYSLAMYCDLVALLGIAVVLLAFA
LVQALRGQKLARLYFVGWIVFLASVIVTSLIYLGAIQTTMEPLSPAMAGVTFEIVFMSLVLAIRYSDERKAKQRIQQEAL
EQAKRIREAREEALKVEAESNERLEEMVQERTLELEIVLRELNEVNQKLTEQTTIDSLTGVKNRAAFNKRLQAEGRISRR
QQTPMALLMLDIDHFKNINDKYGHLAGDYTLKAIADTLSAQLRRPTDLVSRFGGEEFAIILPSTDAEGAVAVAEHIREAV
EELTIKWEQFMIPLTVSIGVSSNIIESDEHPLQLLEQADKALYQAKHDGRNRVGLFQDIPVPHP

Sequences:

>Translated_624_residues
MGRLLLLLLALGYSLLAQAGAPALVYTQESGDVIELTPWVSAFQASELIDYRELPPQNDPRWQQLPKQGTHGMGAQNRWL
RIDIDVRTHPGSRVLSINNPLLDNLRLYHLVNGNLMTEHHFGDSLPFDERLLLSTQFLYPLQLRPWEHHTLLLRVDTEGS
SHVPLTLMTPGHLSQMLESRNLVQGFQLGILAAIGLFSLFVALASGSFSYSYYAAYVLSMTLLVASLQGVAFRYLWPQLP
AMQAWVIPFLLPLVMCFALMFAEKVLQLKYLNIRMLRICRFSATFSLFLALLSPFISYSLAMYCDLVALLGIAVVLLAFA
LVQALRGQKLARLYFVGWIVFLASVIVTSLIYLGAIQTTMEPLSPAMAGVTFEIVFMSLVLAIRYSDERKAKQRIQQEAL
EQAKRIREAREEALKVEAESNERLEEMVQERTLELEIVLRELNEVNQKLTEQTTIDSLTGVKNRAAFNKRLQAEGRISRR
QQTPMALLMLDIDHFKNINDKYGHLAGDYTLKAIADTLSAQLRRPTDLVSRFGGEEFAIILPSTDAEGAVAVAEHIREAV
EELTIKWEQFMIPLTVSIGVSSNIIESDEHPLQLLEQADKALYQAKHDGRNRVGLFQDIPVPHP
>Mature_623_residues
GRLLLLLLALGYSLLAQAGAPALVYTQESGDVIELTPWVSAFQASELIDYRELPPQNDPRWQQLPKQGTHGMGAQNRWLR
IDIDVRTHPGSRVLSINNPLLDNLRLYHLVNGNLMTEHHFGDSLPFDERLLLSTQFLYPLQLRPWEHHTLLLRVDTEGSS
HVPLTLMTPGHLSQMLESRNLVQGFQLGILAAIGLFSLFVALASGSFSYSYYAAYVLSMTLLVASLQGVAFRYLWPQLPA
MQAWVIPFLLPLVMCFALMFAEKVLQLKYLNIRMLRICRFSATFSLFLALLSPFISYSLAMYCDLVALLGIAVVLLAFAL
VQALRGQKLARLYFVGWIVFLASVIVTSLIYLGAIQTTMEPLSPAMAGVTFEIVFMSLVLAIRYSDERKAKQRIQQEALE
QAKRIREAREEALKVEAESNERLEEMVQERTLELEIVLRELNEVNQKLTEQTTIDSLTGVKNRAAFNKRLQAEGRISRRQ
QTPMALLMLDIDHFKNINDKYGHLAGDYTLKAIADTLSAQLRRPTDLVSRFGGEEFAIILPSTDAEGAVAVAEHIREAVE
ELTIKWEQFMIPLTVSIGVSSNIIESDEHPLQLLEQADKALYQAKHDGRNRVGLFQDIPVPHP

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=159, Percent_Identity=39.622641509434, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1786584, Length=173, Percent_Identity=37.5722543352601, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI1787802, Length=175, Percent_Identity=36.5714285714286, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI87082007, Length=159, Percent_Identity=39.622641509434, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=39.2045454545455, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI1788381, Length=172, Percent_Identity=33.1395348837209, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI145693134, Length=204, Percent_Identity=32.843137254902, Blast_Score=96, Evalue=8e-21,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=36.144578313253, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1788085, Length=159, Percent_Identity=32.0754716981132, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI1787056, Length=163, Percent_Identity=32.5153374233129, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1788956, Length=221, Percent_Identity=33.0316742081448, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081977, Length=196, Percent_Identity=28.0612244897959, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1787541, Length=164, Percent_Identity=29.8780487804878, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 70324; Mature: 70193

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRLLLLLLALGYSLLAQAGAPALVYTQESGDVIELTPWVSAFQASELIDYRELPPQNDP
CHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCC
RWQQLPKQGTHGMGAQNRWLRIDIDVRTHPGSRVLSINNPLLDNLRLYHLVNGNLMTEHH
HHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEECCCHHHCEEEEEEECCCEEEECC
FGDSLPFDERLLLSTQFLYPLQLRPWEHHTLLLRVDTEGSSHVPLTLMTPGHLSQMLESR
CCCCCCCCCHHHHHHHCCCEEECCCCCCCEEEEEEECCCCCCCCEEEECCHHHHHHHHHH
NLVQGFQLGILAAIGLFSLFVALASGSFSYSYYAAYVLSMTLLVASLQGVAFRYLWPQLP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AMQAWVIPFLLPLVMCFALMFAEKVLQLKYLNIRMLRICRFSATFSLFLALLSPFISYSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMYCDLVALLGIAVVLLAFALVQALRGQKLARLYFVGWIVFLASVIVTSLIYLGAIQTTM
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EPLSPAMAGVTFEIVFMSLVLAIRYSDERKAKQRIQQEALEQAKRIREAREEALKVEAES
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC
NERLEEMVQERTLELEIVLRELNEVNQKLTEQTTIDSLTGVKNRAAFNKRLQAEGRISRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHH
QQTPMALLMLDIDHFKNINDKYGHLAGDYTLKAIADTLSAQLRRPTDLVSRFGGEEFAII
HCCCCEEEEEEHHHHCCCCCHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEE
LPSTDAEGAVAVAEHIREAVEELTIKWEQFMIPLTVSIGVSSNIIESDEHPLQLLEQADK
EECCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCHHHHHHHHHHH
ALYQAKHDGRNRVGLFQDIPVPHP
HHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GRLLLLLLALGYSLLAQAGAPALVYTQESGDVIELTPWVSAFQASELIDYRELPPQNDP
HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCC
RWQQLPKQGTHGMGAQNRWLRIDIDVRTHPGSRVLSINNPLLDNLRLYHLVNGNLMTEHH
HHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEECCCHHHCEEEEEEECCCEEEECC
FGDSLPFDERLLLSTQFLYPLQLRPWEHHTLLLRVDTEGSSHVPLTLMTPGHLSQMLESR
CCCCCCCCCHHHHHHHCCCEEECCCCCCCEEEEEEECCCCCCCCEEEECCHHHHHHHHHH
NLVQGFQLGILAAIGLFSLFVALASGSFSYSYYAAYVLSMTLLVASLQGVAFRYLWPQLP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AMQAWVIPFLLPLVMCFALMFAEKVLQLKYLNIRMLRICRFSATFSLFLALLSPFISYSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMYCDLVALLGIAVVLLAFALVQALRGQKLARLYFVGWIVFLASVIVTSLIYLGAIQTTM
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EPLSPAMAGVTFEIVFMSLVLAIRYSDERKAKQRIQQEALEQAKRIREAREEALKVEAES
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC
NERLEEMVQERTLELEIVLRELNEVNQKLTEQTTIDSLTGVKNRAAFNKRLQAEGRISRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHH
QQTPMALLMLDIDHFKNINDKYGHLAGDYTLKAIADTLSAQLRRPTDLVSRFGGEEFAII
HCCCCEEEEEEHHHHCCCCCHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEE
LPSTDAEGAVAVAEHIREAVEELTIKWEQFMIPLTVSIGVSSNIIESDEHPLQLLEQADK
EECCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCHHHHHHHHHHH
ALYQAKHDGRNRVGLFQDIPVPHP
HHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]