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The map label for this gene is yjcC [C]

Identifier: 119776285

GI number: 119776285

Start: 3740309

End: 3742063

Strand: Direct

Name: yjcC [C]

Synonym: Sama_3153

Alternate gene names: 119776285

Gene position: 3740309-3742063 (Clockwise)

Preceding gene: 119776284

Following gene: 119776288

Centisome position: 86.86

GC content: 52.65

Gene sequence:

>1755_bases
ATGATGGCCGCCATAGATTTAAAGGCAGAACTGACAAAACTCATTGAAAAGCAAAGCATAGAATCGCTTTTTCAACCCAT
TTTCAATATCAGTGCCGGAAAAATCCACGGTTTTGAGGCCCTTTCCCGAGGGCCAGTGCACAGTCCTTTATATTCCCCCG
TCCCCCTGTTTAAAACGGCTGAGCATGAAGGAAGACTGAGCGAGCTGGAAACCCTTTGTCGCCAGATTGCAGCGGGGCGT
TTTGCCGAACGAAAGCTGCCGGGAAAGCTTTTTATCAACATCTCCCCCAAAGCCTTGTTGGACCCGGATCACCCCAAGGG
CAAGACCCTGACCATGCTGCAGCAATTGGGCATATCGCCATCACAGGTTGTCATTGAGCTATCAGAGCAGCATCCCGCCG
ACGATATCGATCTGCTGAAAACCTGCCTGCTGCACTACCGCAACCAAGGTTTTTTAACCGCCATTGACGATCTGGGTGCA
GGTTACTCTGGTCTCAGACTCTGGTCAGAATTGGCGCCGGACTATGTCAAAATCGACCGCCACTTTATTCACCAAATCGA
CAAACATCCTGTCAAACAAGAGTTTGTACGCTCCATTGTGGAGCTTTGCCAAAGCCTGACCTGCAAGGTTATTGCCGAAG
GAATAGAAACCGCAGCTGAACTGCAGGTACTCAGACAACTCGGGATCATCTATTGCCAGGGTTTTTTGCTTGGACGCCCG
GAGGCCAACCCAAATAAACAGCTCCCCCCGGGACTGAGCCCACAGCCCAATATCGGGCAGAGTACCCACAGGTATATCGA
AACCGCCGAAAGCTTGGCATGTGGCGCTGTGACTGTACCCACTGACACAAAACTCAAGACCATCAGCGATCGTTTCAGTA
GCCAGCCGGCATTGCAGGCCATGGTGGTAGTTGAAGGCGACACACCTCTGGGACTGATCAGTCGCACAGCCCTGCTGGAG
TTATTTTCAACCCCCTACGGCCGCGCCCTGCATGAAAATCACTGTGTTACCGAAGTCATGGACACCCGGGTGCCCCAGTT
TGATGCATCAGAGGCCCTCAGCAGCGTCAGCCAACTCCTGACTTCTGATTCGGATCAGCTTATGGCCCAGCAGTTTTTAA
TTCTGCGTCAGGACAAACTGATAGGCGTGGGCCACACCAAGGACTTGCTGGCCCGGATCACAGAGCACCGAATTAAGGTC
GCCCGCCATGCCAACCCTCTCACCGGGCTGCCGGGTAATGTACCCATTCAGGAAGAGCTGCAGCGGTTGAAACAGCAAAG
CCGCCCCTTTTATCTGGTTTATTTCGACTTGAGTCACTTCAAACCCTATAACGATATCTATGGCTTTTGCCGGGGAGACG
AGGTGATTTGTTATGTGGCATCGCTGCTTGCCGAACACCAAGATGCCGACTGCTTTGTGGGTCACATTGGAGGCGATGAT
TTTGTGATGATTACTACTGACGATCCCACATGCAGGGTTGCAGGGATCCTCAAGAATTTTGAAGCCGAAAAACGCAGCTT
TTTCCAGGAAGCGCATTGGCAGGCACAGTTTATCTCGGCCGAAGACCGCCAGGGTGCGCTCAGTCTGCAGCCTCTGACAT
CTCTGTGTGCCGGCATACTTTCGCCAAGACACACCTTCAATGCTACCGAACATGAACTGTCGGCACTTAGCGCACGGGCA
AAAAAACAGGCAAAGCTCACCGAAAGTGGACTTTGCCTGCTTGGCAGTACCCCGCCTCAGCTGAGGCAGGCCTGA

Upstream 100 bases:

>100_bases
CTGCAAACCCTGCAAGCATTCAAATCCCAGAGTAAATAAGCGGTCATCTTTCTGTCATAAGGCTGCCATAGACTGCCGGA
ACCTTGGGCTCCCGGTACGA

Downstream 100 bases:

>100_bases
TTCAGACAGTTAGAGCTTGGGGGCAACCTGCTTGTCAAACCACTCGGTTAACAGGCGGATTTCATGGGAAAAGGGTCTGT
CATTCACTGGGCGAATGTCG

Product: putative diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 584; Mature: 584

Protein sequence:

>584_residues
MMAAIDLKAELTKLIEKQSIESLFQPIFNISAGKIHGFEALSRGPVHSPLYSPVPLFKTAEHEGRLSELETLCRQIAAGR
FAERKLPGKLFINISPKALLDPDHPKGKTLTMLQQLGISPSQVVIELSEQHPADDIDLLKTCLLHYRNQGFLTAIDDLGA
GYSGLRLWSELAPDYVKIDRHFIHQIDKHPVKQEFVRSIVELCQSLTCKVIAEGIETAAELQVLRQLGIIYCQGFLLGRP
EANPNKQLPPGLSPQPNIGQSTHRYIETAESLACGAVTVPTDTKLKTISDRFSSQPALQAMVVVEGDTPLGLISRTALLE
LFSTPYGRALHENHCVTEVMDTRVPQFDASEALSSVSQLLTSDSDQLMAQQFLILRQDKLIGVGHTKDLLARITEHRIKV
ARHANPLTGLPGNVPIQEELQRLKQQSRPFYLVYFDLSHFKPYNDIYGFCRGDEVICYVASLLAEHQDADCFVGHIGGDD
FVMITTDDPTCRVAGILKNFEAEKRSFFQEAHWQAQFISAEDRQGALSLQPLTSLCAGILSPRHTFNATEHELSALSARA
KKQAKLTESGLCLLGSTPPQLRQA

Sequences:

>Translated_584_residues
MMAAIDLKAELTKLIEKQSIESLFQPIFNISAGKIHGFEALSRGPVHSPLYSPVPLFKTAEHEGRLSELETLCRQIAAGR
FAERKLPGKLFINISPKALLDPDHPKGKTLTMLQQLGISPSQVVIELSEQHPADDIDLLKTCLLHYRNQGFLTAIDDLGA
GYSGLRLWSELAPDYVKIDRHFIHQIDKHPVKQEFVRSIVELCQSLTCKVIAEGIETAAELQVLRQLGIIYCQGFLLGRP
EANPNKQLPPGLSPQPNIGQSTHRYIETAESLACGAVTVPTDTKLKTISDRFSSQPALQAMVVVEGDTPLGLISRTALLE
LFSTPYGRALHENHCVTEVMDTRVPQFDASEALSSVSQLLTSDSDQLMAQQFLILRQDKLIGVGHTKDLLARITEHRIKV
ARHANPLTGLPGNVPIQEELQRLKQQSRPFYLVYFDLSHFKPYNDIYGFCRGDEVICYVASLLAEHQDADCFVGHIGGDD
FVMITTDDPTCRVAGILKNFEAEKRSFFQEAHWQAQFISAEDRQGALSLQPLTSLCAGILSPRHTFNATEHELSALSARA
KKQAKLTESGLCLLGSTPPQLRQA
>Mature_584_residues
MMAAIDLKAELTKLIEKQSIESLFQPIFNISAGKIHGFEALSRGPVHSPLYSPVPLFKTAEHEGRLSELETLCRQIAAGR
FAERKLPGKLFINISPKALLDPDHPKGKTLTMLQQLGISPSQVVIELSEQHPADDIDLLKTCLLHYRNQGFLTAIDDLGA
GYSGLRLWSELAPDYVKIDRHFIHQIDKHPVKQEFVRSIVELCQSLTCKVIAEGIETAAELQVLRQLGIIYCQGFLLGRP
EANPNKQLPPGLSPQPNIGQSTHRYIETAESLACGAVTVPTDTKLKTISDRFSSQPALQAMVVVEGDTPLGLISRTALLE
LFSTPYGRALHENHCVTEVMDTRVPQFDASEALSSVSQLLTSDSDQLMAQQFLILRQDKLIGVGHTKDLLARITEHRIKV
ARHANPLTGLPGNVPIQEELQRLKQQSRPFYLVYFDLSHFKPYNDIYGFCRGDEVICYVASLLAEHQDADCFVGHIGGDD
FVMITTDDPTCRVAGILKNFEAEKRSFFQEAHWQAQFISAEDRQGALSLQPLTSLCAGILSPRHTFNATEHELSALSARA
KKQAKLTESGLCLLGSTPPQLRQA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=258, Percent_Identity=29.4573643410853, Blast_Score=109, Evalue=4e-25,
Organism=Escherichia coli, GI87081845, Length=237, Percent_Identity=29.535864978903, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI1787541, Length=253, Percent_Identity=30.0395256916996, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI226510982, Length=244, Percent_Identity=30.7377049180328, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI87081743, Length=237, Percent_Identity=32.0675105485232, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI87081921, Length=256, Percent_Identity=27.34375, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1787055, Length=225, Percent_Identity=30.2222222222222, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI87082096, Length=208, Percent_Identity=29.3269230769231, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI1787410, Length=221, Percent_Identity=26.6968325791855, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1788502, Length=242, Percent_Identity=28.5123966942149, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1788849, Length=240, Percent_Identity=25.8333333333333, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1786507, Length=233, Percent_Identity=26.6094420600858, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI87081980, Length=262, Percent_Identity=25.5725190839695, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 64706; Mature: 64706

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMAAIDLKAELTKLIEKQSIESLFQPIFNISAGKIHGFEALSRGPVHSPLYSPVPLFKTA
CCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
EHEGRLSELETLCRQIAAGRFAERKLPGKLFINISPKALLDPDHPKGKTLTMLQQLGISP
CCCCCHHHHHHHHHHHHHCHHHHHCCCCEEEEEECCHHCCCCCCCCCHHHHHHHHHCCCH
SQVVIELSEQHPADDIDLLKTCLLHYRNQGFLTAIDDLGAGYSGLRLWSELAPDYVKIDR
HHEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHCCCHHHHHHHHHHCCHHHHHHH
HFIHQIDKHPVKQEFVRSIVELCQSLTCKVIAEGIETAAELQVLRQLGIIYCQGFLLGRP
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECC
EANPNKQLPPGLSPQPNIGQSTHRYIETAESLACGAVTVPTDTKLKTISDRFSSQPALQA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHCCCCCEEE
MVVVEGDTPLGLISRTALLELFSTPYGRALHENHCVTEVMDTRVPQFDASEALSSVSQLL
EEEEECCCCHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
TSDSDQLMAQQFLILRQDKLIGVGHTKDLLARITEHRIKVARHANPLTGLPGNVPIQEEL
HCCHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
QRLKQQSRPFYLVYFDLSHFKPYNDIYGFCRGDEVICYVASLLAEHQDADCFVGHIGGDD
HHHHHHCCCEEEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCC
FVMITTDDPTCRVAGILKNFEAEKRSFFQEAHWQAQFISAEDRQGALSLQPLTSLCAGIL
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEHHHHHHHHHHHC
SPRHTFNATEHELSALSARAKKQAKLTESGLCLLGSTPPQLRQA
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCC
>Mature Secondary Structure
MMAAIDLKAELTKLIEKQSIESLFQPIFNISAGKIHGFEALSRGPVHSPLYSPVPLFKTA
CCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
EHEGRLSELETLCRQIAAGRFAERKLPGKLFINISPKALLDPDHPKGKTLTMLQQLGISP
CCCCCHHHHHHHHHHHHHCHHHHHCCCCEEEEEECCHHCCCCCCCCCHHHHHHHHHCCCH
SQVVIELSEQHPADDIDLLKTCLLHYRNQGFLTAIDDLGAGYSGLRLWSELAPDYVKIDR
HHEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHCCCHHHHHHHHHHCCHHHHHHH
HFIHQIDKHPVKQEFVRSIVELCQSLTCKVIAEGIETAAELQVLRQLGIIYCQGFLLGRP
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECC
EANPNKQLPPGLSPQPNIGQSTHRYIETAESLACGAVTVPTDTKLKTISDRFSSQPALQA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHCCCCCEEE
MVVVEGDTPLGLISRTALLELFSTPYGRALHENHCVTEVMDTRVPQFDASEALSSVSQLL
EEEEECCCCHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
TSDSDQLMAQQFLILRQDKLIGVGHTKDLLARITEHRIKVARHANPLTGLPGNVPIQEEL
HCCHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
QRLKQQSRPFYLVYFDLSHFKPYNDIYGFCRGDEVICYVASLLAEHQDADCFVGHIGGDD
HHHHHHCCCEEEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCC
FVMITTDDPTCRVAGILKNFEAEKRSFFQEAHWQAQFISAEDRQGALSLQPLTSLCAGIL
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEHHHHHHHHHHHC
SPRHTFNATEHELSALSARAKKQAKLTESGLCLLGSTPPQLRQA
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]