| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119776274
Identifier: 119776274
GI number: 119776274
Start: 3729464
End: 3730657
Strand: Reverse
Name: 119776274
Synonym: Sama_3142
Alternate gene names: NA
Gene position: 3730657-3729464 (Counterclockwise)
Preceding gene: 119776275
Following gene: 119776273
Centisome position: 86.64
GC content: 54.52
Gene sequence:
>1194_bases ATGAACACCTTTCGTTTGTCTGTATTGGCATCTGCCTTGATTTCTGCTGCGGCAGCCGCTGAAACCCCTACTCTGGGTAA CCCCGCCATCAGTGCCGTATTGGATGGCTACTACCAGAGTGGCGATCGTGCCCTTGGTGGCCGTGAAGAAGGCTTTGGCC TGGGTGAGAGTGAGCTGGCCATCAGTGCCAATATCGATGACCTCTTCTATGGCAAGTTAACCGCAGTGATTGAGGCGCAC GATGGTGAAACCGAGCTGGAGCTTGAAGAAGCCTTTGTCCAGACTCTGGCATTGCCTGGGGGCCTGTCTGTGCGCGCGGG CCGTTTCCTGTCTGATGTGGGTTACCTGAACAACCAGCACCTCCACAGCGATGCCTTTGCCGGTCGCCCTGCGGTGTACC GCGCTTTTCTTGGCAGTCATTACTTTGATGATGGTCTGCGTCTGAGCTGGGTTGCACCGACGGATCTCTATTGGACCTTC GGCGTTGAAGGCTTCAAAGGCGACAAGATGCGTGCCGAAGACGAGCATGGCGAGCGTGAATTCGATACCGTTGGGGTTTA CAACGCCTTCACCAAGTTGGGCGGTGATATAGGTGACAACAGTTCATGGCAGCTGGGACTGGCCTACATGAAAAACCAGA ATGGCCGCCTCACCCCCCATGAAGAAGGGGAAGAGGTTCATGAGGAAGATGAACACGCCCATGACCACAGCCATAGTGCC GCCTACACGGGCGAGAACACCTATGTGGCTGACTTTGTTTATAAATGGGCGCCAAACGGCAATTACAAGTATCAACACCT CACCCTGAGCGGCGAGTTTTTCCGCGTGAACGATTTCAAGGCGCCAGAGCTGCATGAAGAGGAACACGAGGAAGAAGAAG GCCACGAGCATGCCCATGACAAGGACTACCATCAGGGCTGGTACCTGAGTGGTGTGTATCAGTTCAGCCCCAGCTGGTCT GCCGGTTTGCGTTATGGCGAGCTGGATACCCAACTGGCCCACGATGACCACTATGATGCCCAGAAGCTGAAAGAGACCGA AGTCAGCCTCAACTGGCATCATAGCCATTTCTCCACCGTGCGTTTGCAGTACACCCGTCAACAGGGAACCAACTTTGACG GCATCAGCGACGATAATCTGTTCACCCTGCAATATGTTATGACTCTGGGGGCCCATGGTGCGCATCAATTCTAA
Upstream 100 bases:
>100_bases TGGTCCACCACTCGCTCCTTAAATACATATTGCATTGAAAAGTTAACTATTTCCCGATGGTCAACCGCCGTCGGGGTCTT GCTGTATTTTTGGAGAATTT
Downstream 100 bases:
>100_bases GTTGCTCGGGGGCCTGCTGGCCCTCACTCTGGGCCACAGCGCCAGTGCCGTGGCCGGTTTGAATATCTTTGCCTGTGAGC CCGAATACGCGGCACTGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 397; Mature: 397
Protein sequence:
>397_residues MNTFRLSVLASALISAAAAAETPTLGNPAISAVLDGYYQSGDRALGGREEGFGLGESELAISANIDDLFYGKLTAVIEAH DGETELELEEAFVQTLALPGGLSVRAGRFLSDVGYLNNQHLHSDAFAGRPAVYRAFLGSHYFDDGLRLSWVAPTDLYWTF GVEGFKGDKMRAEDEHGEREFDTVGVYNAFTKLGGDIGDNSSWQLGLAYMKNQNGRLTPHEEGEEVHEEDEHAHDHSHSA AYTGENTYVADFVYKWAPNGNYKYQHLTLSGEFFRVNDFKAPELHEEEHEEEEGHEHAHDKDYHQGWYLSGVYQFSPSWS AGLRYGELDTQLAHDDHYDAQKLKETEVSLNWHHSHFSTVRLQYTRQQGTNFDGISDDNLFTLQYVMTLGAHGAHQF
Sequences:
>Translated_397_residues MNTFRLSVLASALISAAAAAETPTLGNPAISAVLDGYYQSGDRALGGREEGFGLGESELAISANIDDLFYGKLTAVIEAH DGETELELEEAFVQTLALPGGLSVRAGRFLSDVGYLNNQHLHSDAFAGRPAVYRAFLGSHYFDDGLRLSWVAPTDLYWTF GVEGFKGDKMRAEDEHGEREFDTVGVYNAFTKLGGDIGDNSSWQLGLAYMKNQNGRLTPHEEGEEVHEEDEHAHDHSHSA AYTGENTYVADFVYKWAPNGNYKYQHLTLSGEFFRVNDFKAPELHEEEHEEEEGHEHAHDKDYHQGWYLSGVYQFSPSWS AGLRYGELDTQLAHDDHYDAQKLKETEVSLNWHHSHFSTVRLQYTRQQGTNFDGISDDNLFTLQYVMTLGAHGAHQF >Mature_397_residues MNTFRLSVLASALISAAAAAETPTLGNPAISAVLDGYYQSGDRALGGREEGFGLGESELAISANIDDLFYGKLTAVIEAH DGETELELEEAFVQTLALPGGLSVRAGRFLSDVGYLNNQHLHSDAFAGRPAVYRAFLGSHYFDDGLRLSWVAPTDLYWTF GVEGFKGDKMRAEDEHGEREFDTVGVYNAFTKLGGDIGDNSSWQLGLAYMKNQNGRLTPHEEGEEVHEEDEHAHDHSHSA AYTGENTYVADFVYKWAPNGNYKYQHLTLSGEFFRVNDFKAPELHEEEHEEEEGHEHAHDKDYHQGWYLSGVYQFSPSWS AGLRYGELDTQLAHDDHYDAQKLKETEVSLNWHHSHFSTVRLQYTRQQGTNFDGISDDNLFTLQYVMTLGAHGAHQF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44468; Mature: 44468
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTFRLSVLASALISAAAAAETPTLGNPAISAVLDGYYQSGDRALGGREEGFGLGESELA CCEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE ISANIDDLFYGKLTAVIEAHDGETELELEEAFVQTLALPGGLSVRAGRFLSDVGYLNNQH EECCCCHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCC LHSDAFAGRPAVYRAFLGSHYFDDGLRLSWVAPTDLYWTFGVEGFKGDKMRAEDEHGERE CCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCC FDTVGVYNAFTKLGGDIGDNSSWQLGLAYMKNQNGRLTPHEEGEEVHEEDEHAHDHSHSA HHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCC AYTGENTYVADFVYKWAPNGNYKYQHLTLSGEFFRVNDFKAPELHEEEHEEEEGHEHAHD EECCCCCEEEEEEEEECCCCCEEEEEEEECCCEEEECCCCCCCCCCHHHHHHHHHHCCCC KDYHQGWYLSGVYQFSPSWSAGLRYGELDTQLAHDDHYDAQKLKETEVSLNWHHSHFSTV CCCCCCEEEEEEEEECCCHHHCCEECCCCCHHCCCCCCCHHHHHHHHEEEEEECCCEEEE RLQYTRQQGTNFDGISDDNLFTLQYVMTLGAHGAHQF EEEEECCCCCCCCCCCCCCEEHHHHHHHHCCCCCCCC >Mature Secondary Structure MNTFRLSVLASALISAAAAAETPTLGNPAISAVLDGYYQSGDRALGGREEGFGLGESELA CCEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE ISANIDDLFYGKLTAVIEAHDGETELELEEAFVQTLALPGGLSVRAGRFLSDVGYLNNQH EECCCCHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCC LHSDAFAGRPAVYRAFLGSHYFDDGLRLSWVAPTDLYWTFGVEGFKGDKMRAEDEHGERE CCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCC FDTVGVYNAFTKLGGDIGDNSSWQLGLAYMKNQNGRLTPHEEGEEVHEEDEHAHDHSHSA HHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCC AYTGENTYVADFVYKWAPNGNYKYQHLTLSGEFFRVNDFKAPELHEEEHEEEEGHEHAHD EECCCCCEEEEEEEEECCCCCEEEEEEEECCCEEEECCCCCCCCCCHHHHHHHHHHCCCC KDYHQGWYLSGVYQFSPSWSAGLRYGELDTQLAHDDHYDAQKLKETEVSLNWHHSHFSTV CCCCCCEEEEEEEEECCCHHHCCEECCCCCHHCCCCCCCHHHHHHHHEEEEEECCCEEEE RLQYTRQQGTNFDGISDDNLFTLQYVMTLGAHGAHQF EEEEECCCCCCCCCCCCCCEEHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]