| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776275
Identifier: 119776275
GI number: 119776275
Start: 3730736
End: 3731029
Strand: Reverse
Name: 119776275
Synonym: Sama_3143
Alternate gene names: NA
Gene position: 3731029-3730736 (Counterclockwise)
Preceding gene: 119776276
Following gene: 119776274
Centisome position: 86.64
GC content: 56.8
Gene sequence:
>294_bases GTGCAATTTCCAAGGCGCAAAATTCATCGACTTATCGCTGTATGGCTTTCTGCCGTACTGGTGCTTTTGTCGTTTATTGC TGCCGCCCACGCCACGACCCACCTCGATGAAGGAGGGTACAATCACTGTACCCTCTGCTTCCATCAGCATCAGCTGAACA AGCTCCTGCCCGGGGTGAACCTGCCCAAGGTGCCCCTGCTACAGGTGTTCGAGCAACCCCAGACTCCGCTGTTTACTTCA GTGGAGTCGGTCCGTCCACAGCCCCAGGCCCGTGGTCCACCACTCGCTCCTTAA
Upstream 100 bases:
>100_bases ATGAATAACATTCTGTAACTTTTCTACTGCGATCACGGTTGCCAGCCTATTTGGGCTGCCGTAAACTTGAGCCGCTTCAC AAATCACCGGAGTAGGGTGC
Downstream 100 bases:
>100_bases ATACATATTGCATTGAAAAGTTAACTATTTCCCGATGGTCAACCGCCGTCGGGGTCTTGCTGTATTTTTGGAGAATTTAT GAACACCTTTCGTTTGTCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 97; Mature: 97
Protein sequence:
>97_residues MQFPRRKIHRLIAVWLSAVLVLLSFIAAAHATTHLDEGGYNHCTLCFHQHQLNKLLPGVNLPKVPLLQVFEQPQTPLFTS VESVRPQPQARGPPLAP
Sequences:
>Translated_97_residues MQFPRRKIHRLIAVWLSAVLVLLSFIAAAHATTHLDEGGYNHCTLCFHQHQLNKLLPGVNLPKVPLLQVFEQPQTPLFTS VESVRPQPQARGPPLAP >Mature_97_residues MQFPRRKIHRLIAVWLSAVLVLLSFIAAAHATTHLDEGGYNHCTLCFHQHQLNKLLPGVNLPKVPLLQVFEQPQTPLFTS VESVRPQPQARGPPLAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10848; Mature: 10848
Theoretical pI: Translated: 10.13; Mature: 10.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQFPRRKIHRLIAVWLSAVLVLLSFIAAAHATTHLDEGGYNHCTLCFHQHQLNKLLPGVN CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC LPKVPLLQVFEQPQTPLFTSVESVRPQPQARGPPLAP CCCCHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MQFPRRKIHRLIAVWLSAVLVLLSFIAAAHATTHLDEGGYNHCTLCFHQHQLNKLLPGVN CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC LPKVPLLQVFEQPQTPLFTSVESVRPQPQARGPPLAP CCCCHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA