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The map label for this gene is ycaD [C]

Identifier: 119776244

GI number: 119776244

Start: 3687752

End: 3689314

Strand: Direct

Name: ycaD [C]

Synonym: Sama_3112

Alternate gene names: 119776244

Gene position: 3687752-3689314 (Clockwise)

Preceding gene: 119776243

Following gene: 119776246

Centisome position: 85.64

GC content: 58.93

Gene sequence:

>1563_bases
ATGACCAACCCATTGCGGACCTTTGCGTCCCTGTACAGCACCACCCTCTTGACTGTGCTGGCCGGGGGCCTGTTGACCAC
CTATCTGGGCCTGAAACTGTCGGCCATGCAGGTGCCCCAGATTTGGATTGGTGCCATGATGTCGGCCTACTACGCCGGTC
TGGTGGCGGGCTCCAAGATTGGCCACCGGCTTATTGCCCGGGTGGGCCATATCCGCGCCTTTGTAGCCAGTGCCGGTATA
GTCACCGCCTCCGCCCTTGGGCATGCCCTGGTCGACGACCTCTCGATTTGGATAGTGCTGCGCCTCTTGGTGGGACTTGG
CATGATGTGTCAGTACATGGTGCTGGAAAGCTGGCTCAACGAGCAGGCCGACAACAGCCAGCGCGGCACTGTCTTCGCAA
GTTATATGATTGTCTCTTATTTGGCGCTGATTTTGGGTCAGGGTGCCATCAGCCTCTATCCGGATTTGGGGCTGGAGCCA
CTCCTGCTAATCGCCATCTGTTTTGCCCTGTGCATAGTACCCATTGCCCTCACCCGCCGCATTCACCCGGCGCCCCTGGT
ACCCGCGCCCCTTAACGTGACTCATTTTTTCAAAAAGGCGCCACAGGCACTCACCACGGTCGCCATTGGCAGCATGATAG
TGGGCTCCTTTTACGGCTTGGCGCCCGCCTATGCCAGTAATCTGGGGTTGGATCCGCAGCAAGTGGCGAGCTTTATGACA
GCCACCATAGCCGCTGGCCTGCTGGCCCAGTGGCCCATGGGCAAGCTGTCGGACCGGATGTCCCGCAGCCGATTGATTCG
AACCAACTGCCTGCTGCTTGGGGTGCTCACCCTGGGCATCGCCATCACCCCTTACCAGCCCACGGTGGCGCTGGTGATGA
CCTTCCTGTTCGGCATACTCGGTTTTACCCTGTACCCGCTGGCCACGGCACTGGCCAACTCGCGGGTGGAGCAAAGCGAG
CGGGTGGGGCTGTCTGCCACTATTTTGCTTACCTTCGGCCTTGGCGCCTGTATCGGCCCCCTGATTGCCTCGACCCTAAT
GCAGTGGCTGGGCAACAGCATGCTCTACGGCTTTATGTCGGCCTGCACCCTGGTACTCTTTGCCGGGCTTAACTACATCA
ATGCCCGTCAGAAAGCGGAAGAGCCCTCCACCAATGACTACATCATGGCCACCGGCGACCTGGTATCGTCACCTCTGGCC
GCCGCCCTCGACCCCCGTGTGGATATCGAATCAGTTCAGGAGCAGATGACCCCAACTGCCGGTGACGACATTGCCGATGC
CAATGCCTACATAGATGAGGATGACTATGTCGATGAGGGTGACAGCGCAGATAACGACATCAGCGACAATGATGAGCCAA
CCGGCGATATAGACAACGCCACCGACCAGCCCGACGCCTTTATCAACGAACAGGACTTTATCGCCGAACCCGAGCCTGCG
ATGGTTCAGGAGAAAGCACCTCCAGCGAATAGAGGGACGTCAACCGAAACTGAGCCAGAGGAGGTCCAGCCGGACGATTC
AGCCGAATCGAACTGGACTGCTGGCCCGAAGAGTAAAAGCTGA

Upstream 100 bases:

>100_bases
ACTCAAGATGGAGACCCAGCTCCCTTTTCTGTATGGATTCCAACAACCTGATGGGTCATTGTTGTTATACTCTCGTTGGC
ATTGTGACAAGGAGTAGTAG

Downstream 100 bases:

>100_bases
CAAACAGCTGATTTCGCAATTAATAAAAAAACAACCTCGCATCGGCGAGGTTGTTTTTTATACAGGACTGTCAGCGGGCC
ACGTTGGTGTAATCCGCCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 519

Protein sequence:

>520_residues
MTNPLRTFASLYSTTLLTVLAGGLLTTYLGLKLSAMQVPQIWIGAMMSAYYAGLVAGSKIGHRLIARVGHIRAFVASAGI
VTASALGHALVDDLSIWIVLRLLVGLGMMCQYMVLESWLNEQADNSQRGTVFASYMIVSYLALILGQGAISLYPDLGLEP
LLLIAICFALCIVPIALTRRIHPAPLVPAPLNVTHFFKKAPQALTTVAIGSMIVGSFYGLAPAYASNLGLDPQQVASFMT
ATIAAGLLAQWPMGKLSDRMSRSRLIRTNCLLLGVLTLGIAITPYQPTVALVMTFLFGILGFTLYPLATALANSRVEQSE
RVGLSATILLTFGLGACIGPLIASTLMQWLGNSMLYGFMSACTLVLFAGLNYINARQKAEEPSTNDYIMATGDLVSSPLA
AALDPRVDIESVQEQMTPTAGDDIADANAYIDEDDYVDEGDSADNDISDNDEPTGDIDNATDQPDAFINEQDFIAEPEPA
MVQEKAPPANRGTSTETEPEEVQPDDSAESNWTAGPKSKS

Sequences:

>Translated_520_residues
MTNPLRTFASLYSTTLLTVLAGGLLTTYLGLKLSAMQVPQIWIGAMMSAYYAGLVAGSKIGHRLIARVGHIRAFVASAGI
VTASALGHALVDDLSIWIVLRLLVGLGMMCQYMVLESWLNEQADNSQRGTVFASYMIVSYLALILGQGAISLYPDLGLEP
LLLIAICFALCIVPIALTRRIHPAPLVPAPLNVTHFFKKAPQALTTVAIGSMIVGSFYGLAPAYASNLGLDPQQVASFMT
ATIAAGLLAQWPMGKLSDRMSRSRLIRTNCLLLGVLTLGIAITPYQPTVALVMTFLFGILGFTLYPLATALANSRVEQSE
RVGLSATILLTFGLGACIGPLIASTLMQWLGNSMLYGFMSACTLVLFAGLNYINARQKAEEPSTNDYIMATGDLVSSPLA
AALDPRVDIESVQEQMTPTAGDDIADANAYIDEDDYVDEGDSADNDISDNDEPTGDIDNATDQPDAFINEQDFIAEPEPA
MVQEKAPPANRGTSTETEPEEVQPDDSAESNWTAGPKSKS
>Mature_519_residues
TNPLRTFASLYSTTLLTVLAGGLLTTYLGLKLSAMQVPQIWIGAMMSAYYAGLVAGSKIGHRLIARVGHIRAFVASAGIV
TASALGHALVDDLSIWIVLRLLVGLGMMCQYMVLESWLNEQADNSQRGTVFASYMIVSYLALILGQGAISLYPDLGLEPL
LLIAICFALCIVPIALTRRIHPAPLVPAPLNVTHFFKKAPQALTTVAIGSMIVGSFYGLAPAYASNLGLDPQQVASFMTA
TIAAGLLAQWPMGKLSDRMSRSRLIRTNCLLLGVLTLGIAITPYQPTVALVMTFLFGILGFTLYPLATALANSRVEQSER
VGLSATILLTFGLGACIGPLIASTLMQWLGNSMLYGFMSACTLVLFAGLNYINARQKAEEPSTNDYIMATGDLVSSPLAA
ALDPRVDIESVQEQMTPTAGDDIADANAYIDEDDYVDEGDSADNDISDNDEPTGDIDNATDQPDAFINEQDFIAEPEPAM
VQEKAPPANRGTSTETEPEEVQPDDSAESNWTAGPKSKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=325, Percent_Identity=27.3846153846154, Blast_Score=131, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 55531; Mature: 55399

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TNPLRTFASLYSTTLLTVLAGGLLTTYLGLKLSAMQVPQIWIGAMMSAYYAGLVAGSKI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GHRLIARVGHIRAFVASAGIVTASALGHALVDDLSIWIVLRLLVGLGMMCQYMVLESWLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQADNSQRGTVFASYMIVSYLALILGQGAISLYPDLGLEPLLLIAICFALCIVPIALTRR
HHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHC
IHPAPLVPAPLNVTHFFKKAPQALTTVAIGSMIVGSFYGLAPAYASNLGLDPQQVASFMT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ATIAAGLLAQWPMGKLSDRMSRSRLIRTNCLLLGVLTLGIAITPYQPTVALVMTFLFGIL
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
GFTLYPLATALANSRVEQSERVGLSATILLTFGLGACIGPLIASTLMQWLGNSMLYGFMS
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ACTLVLFAGLNYINARQKAEEPSTNDYIMATGDLVSSPLAAALDPRVDIESVQEQMTPTA
HHHHHHHHHCHHHHHHHHCCCCCCCCEEEECCHHHHCCHHHHCCCCCCHHHHHHHHCCCC
GDDIADANAYIDEDDYVDEGDSADNDISDNDEPTGDIDNATDQPDAFINEQDFIAEPEPA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
MVQEKAPPANRGTSTETEPEEVQPDDSAESNWTAGPKSKS
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]