| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776237
Identifier: 119776237
GI number: 119776237
Start: 3678128
End: 3678778
Strand: Direct
Name: 119776237
Synonym: Sama_3105
Alternate gene names: NA
Gene position: 3678128-3678778 (Clockwise)
Preceding gene: 119776235
Following gene: 119776238
Centisome position: 85.42
GC content: 56.22
Gene sequence:
>651_bases ATGACAGACTCCGCCCTGCTATACAGCTTTCGTCGCTGCCCCTACGCCATGCGCGCCCGTATGGCGCTGATATTATGCCA ATTGCCCGTCAGGGTAAGAGAGGTCGCCCTCAAAGATAAGCCCGCCGAGTTACTGGCACTCAATCCCAGGGGCACGGTCC CTGTATTGGTCAGCGGCGACACCCTGCTAACAGAAAGTCTCGATATTATGTTGTGGGCCACTGCGCAGTCCAGCCACCCT TATGCGTCCAGACTCAAACAGCAAGTCCCCGCAGCACTGGCCCTGATAACAGTGAACGACGAGGGCTTTAAACCCTGGCT CGACAAATACAAATACTTCGACCGCTATCCGCAATTCGACCAGAGCTACTACCGTGACAACGCCTGTGAATTTATTGCTG ATCTCGATAACAGGCTGCGTCACAGCAGTATGTTGCTGGGTGAAGAGCCAAGCCTCGCGGACGTGGCAATTTTCCCCTTT GTGCGGCAGTTTGCCGGTGTCGAGCCGGGCTGGCTCGCGGCCCGGTACCCCAAGGTCGCGCGCTGGCTGGATAAGCACTT GGCATCAAAGGCATTCTCAGCTTGTATGTACAAGTATCCCCTGTACCAGCAGCAGGGCAACACTCTGCCTTTGGTGCTGG CACAGGATTGA
Upstream 100 bases:
>100_bases ACTCCAAAATACGCTGTAGAAAGCGATAAAAAACGGCAAAGCACCGCCGCAACCATGACCCGTGTTAAAGTGGGGCCAGA TTCATTGCCAGCGTTTAAAC
Downstream 100 bases:
>100_bases GTGGCGGTGTCACCGGCAGCAGCTGTAGCGGCGTTGCCATAGGCGAGTACATCAGGACAGGTAAAACAGACAGAGCAGAT AAGAAGGCAGATGAAAACCG
Product: hypothetical protein
Products: NA
Alternate protein names: Glutathione S-Transferase; Glutathione S-Transferase Domain Protein; Glutathione S-Transferase-Like Protein; Glutathione S-Transferase N Terminus; Glutathione S-Transferase N-Terminal Domain; Glutaredoxin; Glutathione-S-Transferase Domain-Containing Protein; Rhodanese Domain Protein; Glutathione S-Transferase-Like; Glutathione S-Transferase Family Protein; Glutathione S-Transferase C-Terminal-Like Domain; Glutathione S-Transferase Domain; Glutathione-S-Transferase Domain Protein; Glutathione S-Transferase Omega Class; Rhodanese Domain-Containing Protein; Glutathione S-Transferase N-Terminal Domain Protein; Stringent Starvation Protein A; Glutathione S-Transferase N Terminal Domain Protein; GSH-Dependent Dehydroascorbate Reductase; Glutathione S-Transferase C-Terminal Domain Protein
Number of amino acids: Translated: 216; Mature: 215
Protein sequence:
>216_residues MTDSALLYSFRRCPYAMRARMALILCQLPVRVREVALKDKPAELLALNPRGTVPVLVSGDTLLTESLDIMLWATAQSSHP YASRLKQQVPAALALITVNDEGFKPWLDKYKYFDRYPQFDQSYYRDNACEFIADLDNRLRHSSMLLGEEPSLADVAIFPF VRQFAGVEPGWLAARYPKVARWLDKHLASKAFSACMYKYPLYQQQGNTLPLVLAQD
Sequences:
>Translated_216_residues MTDSALLYSFRRCPYAMRARMALILCQLPVRVREVALKDKPAELLALNPRGTVPVLVSGDTLLTESLDIMLWATAQSSHP YASRLKQQVPAALALITVNDEGFKPWLDKYKYFDRYPQFDQSYYRDNACEFIADLDNRLRHSSMLLGEEPSLADVAIFPF VRQFAGVEPGWLAARYPKVARWLDKHLASKAFSACMYKYPLYQQQGNTLPLVLAQD >Mature_215_residues TDSALLYSFRRCPYAMRARMALILCQLPVRVREVALKDKPAELLALNPRGTVPVLVSGDTLLTESLDIMLWATAQSSHPY ASRLKQQVPAALALITVNDEGFKPWLDKYKYFDRYPQFDQSYYRDNACEFIADLDNRLRHSSMLLGEEPSLADVAIFPFV RQFAGVEPGWLAARYPKVARWLDKHLASKAFSACMYKYPLYQQQGNTLPLVLAQD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24628; Mature: 24497
Theoretical pI: Translated: 8.56; Mature: 8.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDSALLYSFRRCPYAMRARMALILCQLPVRVREVALKDKPAELLALNPRGTVPVLVSGD CCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCEEEEEECC TLLTESLDIMLWATAQSSHPYASRLKQQVPAALALITVNDEGFKPWLDKYKYFDRYPQFD EEECCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCHH QSYYRDNACEFIADLDNRLRHSSMLLGEEPSLADVAIFPFVRQFAGVEPGWLAARYPKVA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH RWLDKHLASKAFSACMYKYPLYQQQGNTLPLVLAQD HHHHHHHHHHHHHHHHHHCCCHHCCCCEEEEEEECC >Mature Secondary Structure TDSALLYSFRRCPYAMRARMALILCQLPVRVREVALKDKPAELLALNPRGTVPVLVSGD CCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCEEEEEECC TLLTESLDIMLWATAQSSHPYASRLKQQVPAALALITVNDEGFKPWLDKYKYFDRYPQFD EEECCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCHH QSYYRDNACEFIADLDNRLRHSSMLLGEEPSLADVAIFPFVRQFAGVEPGWLAARYPKVA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH RWLDKHLASKAFSACMYKYPLYQQQGNTLPLVLAQD HHHHHHHHHHHHHHHHHHCCCHHCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA