| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776234
Identifier: 119776234
GI number: 119776234
Start: 3676130
End: 3676897
Strand: Reverse
Name: 119776234
Synonym: Sama_3102
Alternate gene names: NA
Gene position: 3676897-3676130 (Counterclockwise)
Preceding gene: 119776236
Following gene: 119776233
Centisome position: 85.39
GC content: 57.94
Gene sequence:
>768_bases ATGTACAAGCTTCATCGCCTCAAGGGCCATATCCAGACCATCTATCTTGCCGAGCACCCCCAGGGGCTGGTGCTGCTGGA TGGCTGTTGCCGTGCCGATGTTGCCCTGGTGTGCCATTTTATTCGCCACAAGCTCAAACGTTCCCTGGCTGAACTTAAGC TGGTGGTGGTGACCCATATGCATCCGGATCATGCCGGTGGCGCCCATGCCCTGCGGGCTAAAACCGGTGCCCGTATTGTT GCCGCCGACGTACCCGGCCACTGGTACCGGGGGCTGGATGGTATGGCTATGCACCTCACCGATATGGCGCTCGCTGCCTG GGTTGCCAAGCGGCTTGGCAAGCCGATGCGTTGGCTATGGTATTCCCGTAAACTCAGAGCCGATATCTTGCTGGGAGACG ATAGCCGTCTGCCTGAGTTTCCCGAGTGGCGGGTGTTTCATTGCCCCGGCCATACTGATCGGGATCTGGTGTTGCTTCAT GAAGAAGAAGGCTGTGCCTATGTGGCCGATCTGCTGGTGAAGGTGAAAGGCAGGTTCATTCCACCTTTTCCGCTGTTTTA TCCCAACCGTTACAAGAGCTCCCTGATGAAGCTCAAGTGTCTGGCACCTGCGCGGGTAATGCTGGCACACGGCGGCGAGG TCAGTCTGGCAGAGATAGATTTGGACCGGGTGCTGGCCGAGTCTCCCACCGTGCCCATGACCCACTGGCGCTCGGTGAAA ACCAAACTCAGGCAAATCCTCAATCGCCCTGAGCCACCTTCGGTATGA
Upstream 100 bases:
>100_bases AGGAGCTTCGACTAAAGAAGCAGCTTCCCACGCCCTGAGTAGACTTGAGTGGTCTGATGAGTTTGGCCATAATCATCTTT CCATGATTCAGGGAACGATT
Downstream 100 bases:
>100_bases TGCAAGGTTTTATACCGGGTGGCGCCTTTTGCGTTGAGACCCCGGGTATGCTGATACCCAGATAGCTCCCCTTGCGAAGG CCTGCATTCGTCGGCAAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: Metallo-Beta-Lactamase Family Protein; Beta-Lactamase Domain-Containing Protein; Beta-Lactamase-Like; Zinc Metallohydrolase
Number of amino acids: Translated: 255; Mature: 255
Protein sequence:
>255_residues MYKLHRLKGHIQTIYLAEHPQGLVLLDGCCRADVALVCHFIRHKLKRSLAELKLVVVTHMHPDHAGGAHALRAKTGARIV AADVPGHWYRGLDGMAMHLTDMALAAWVAKRLGKPMRWLWYSRKLRADILLGDDSRLPEFPEWRVFHCPGHTDRDLVLLH EEEGCAYVADLLVKVKGRFIPPFPLFYPNRYKSSLMKLKCLAPARVMLAHGGEVSLAEIDLDRVLAESPTVPMTHWRSVK TKLRQILNRPEPPSV
Sequences:
>Translated_255_residues MYKLHRLKGHIQTIYLAEHPQGLVLLDGCCRADVALVCHFIRHKLKRSLAELKLVVVTHMHPDHAGGAHALRAKTGARIV AADVPGHWYRGLDGMAMHLTDMALAAWVAKRLGKPMRWLWYSRKLRADILLGDDSRLPEFPEWRVFHCPGHTDRDLVLLH EEEGCAYVADLLVKVKGRFIPPFPLFYPNRYKSSLMKLKCLAPARVMLAHGGEVSLAEIDLDRVLAESPTVPMTHWRSVK TKLRQILNRPEPPSV >Mature_255_residues MYKLHRLKGHIQTIYLAEHPQGLVLLDGCCRADVALVCHFIRHKLKRSLAELKLVVVTHMHPDHAGGAHALRAKTGARIV AADVPGHWYRGLDGMAMHLTDMALAAWVAKRLGKPMRWLWYSRKLRADILLGDDSRLPEFPEWRVFHCPGHTDRDLVLLH EEEGCAYVADLLVKVKGRFIPPFPLFYPNRYKSSLMKLKCLAPARVMLAHGGEVSLAEIDLDRVLAESPTVPMTHWRSVK TKLRQILNRPEPPSV
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28954; Mature: 28954
Theoretical pI: Translated: 9.99; Mature: 9.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYKLHRLKGHIQTIYLAEHPQGLVLLDGCCRADVALVCHFIRHKLKRSLAELKLVVVTHM CCCHHHHCCCEEEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEC HPDHAGGAHALRAKTGARIVAADVPGHWYRGLDGMAMHLTDMALAAWVAKRLGKPMRWLW CCCCCCCCCEEECCCCCEEEEECCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHH YSRKLRADILLGDDSRLPEFPEWRVFHCPGHTDRDLVLLHEEEGCAYVADLLVKVKGRFI HHHHHEEEEEECCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCC PPFPLFYPNRYKSSLMKLKCLAPARVMLAHGGEVSLAEIDLDRVLAESPTVPMTHWRSVK CCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEEEEECHHHHHHCCCCCCHHHHHHHH TKLRQILNRPEPPSV HHHHHHHCCCCCCCC >Mature Secondary Structure MYKLHRLKGHIQTIYLAEHPQGLVLLDGCCRADVALVCHFIRHKLKRSLAELKLVVVTHM CCCHHHHCCCEEEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEC HPDHAGGAHALRAKTGARIVAADVPGHWYRGLDGMAMHLTDMALAAWVAKRLGKPMRWLW CCCCCCCCCEEECCCCCEEEEECCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHH YSRKLRADILLGDDSRLPEFPEWRVFHCPGHTDRDLVLLHEEEGCAYVADLLVKVKGRFI HHHHHEEEEEECCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCC PPFPLFYPNRYKSSLMKLKCLAPARVMLAHGGEVSLAEIDLDRVLAESPTVPMTHWRSVK CCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEEEEECHHHHHHCCCCCCHHHHHHHH TKLRQILNRPEPPSV HHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA