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The map label for this gene is yiaD [H]

Identifier: 119776228

GI number: 119776228

Start: 3669787

End: 3670455

Strand: Reverse

Name: yiaD [H]

Synonym: Sama_3096

Alternate gene names: 119776228

Gene position: 3670455-3669787 (Counterclockwise)

Preceding gene: 119776231

Following gene: 119776227

Centisome position: 85.24

GC content: 56.8

Gene sequence:

>669_bases
ATGAACAAGAAAGCAATTCTTACCCTGACTGGCGTATTTGCCCTGGCTGCTATGGGCACTGGTTGCAGCACAGTGAACCC
CTATACCAATGAACAGCAAACTGCCAATGCCACCACTGGCGCCATCATAGGTGCTGTTGCAGGTGCTGCCGTGGGCGTAG
CCTCTTCCAGTAAGAGCGACCGCGGTAAAGGTGCGCTGATTGGCGCTGCATCGGGAGCGGCAGTCGGTGGCGGTATCGGT
TATTACATGGATGTGCAGGAAACCAAACTGCGTCAGCAGCTGCAGGCCAGCGGCGTCAGCGTGACCCGCAATGGTGACAA
CATCATTCTGAATATGCCAAACGACGTGACCTTTGCCGTGGACAAGACTGATCTGAGCCCACGCGCCATGCAGGTATTGG
ACTCGGTTGCTCTGGTGGCGAAAGAGTACAGCAAGACCCGTTTGAATGTACTGGGTTATACCGATTCAAGTGGCGCAGAC
AGCTACAACCTGCGTCTGTCTCAGGTACGGGCTTCGGAAGTGGGCAATTACCTGCTGAGCAAGGGGGTTGCTGCCGCGCG
TGTATCCACTCAGGGCATGGGCGAGGCCAGCCCCATCGCGTCTAACGCCACCGCAGAGGGCCGTGCCCAAAACCGCCGCG
TAGAAATTATCCTCACGCCTATTGGCTAA

Upstream 100 bases:

>100_bases
TGGAGGTAGAGCGTATAAGCATTGGGCAATCGCACGGCGTTCAGTTGCCTGTCATCTTGCAGTCGTTATACTGGCCACAA
AAATGACAAGAGGTATTTCC

Downstream 100 bases:

>100_bases
TACGGTAAGCGAATAATTAAAAAGGGAGGCTCTGTCTCCTTTTTTTATTGGTATCTTCCCATGCGTACAGGGTCAACCCA
AAGTTTGATAGGTCACAGGC

Product: OmpA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MNKKAILTLTGVFALAAMGTGCSTVNPYTNEQQTANATTGAIIGAVAGAAVGVASSSKSDRGKGALIGAASGAAVGGGIG
YYMDVQETKLRQQLQASGVSVTRNGDNIILNMPNDVTFAVDKTDLSPRAMQVLDSVALVAKEYSKTRLNVLGYTDSSGAD
SYNLRLSQVRASEVGNYLLSKGVAAARVSTQGMGEASPIASNATAEGRAQNRRVEIILTPIG

Sequences:

>Translated_222_residues
MNKKAILTLTGVFALAAMGTGCSTVNPYTNEQQTANATTGAIIGAVAGAAVGVASSSKSDRGKGALIGAASGAAVGGGIG
YYMDVQETKLRQQLQASGVSVTRNGDNIILNMPNDVTFAVDKTDLSPRAMQVLDSVALVAKEYSKTRLNVLGYTDSSGAD
SYNLRLSQVRASEVGNYLLSKGVAAARVSTQGMGEASPIASNATAEGRAQNRRVEIILTPIG
>Mature_222_residues
MNKKAILTLTGVFALAAMGTGCSTVNPYTNEQQTANATTGAIIGAVAGAAVGVASSSKSDRGKGALIGAASGAAVGGGIG
YYMDVQETKLRQQLQASGVSVTRNGDNIILNMPNDVTFAVDKTDLSPRAMQVLDSVALVAKEYSKTRLNVLGYTDSSGAD
SYNLRLSQVRASEVGNYLLSKGVAAARVSTQGMGEASPIASNATAEGRAQNRRVEIILTPIG

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=219, Percent_Identity=57.0776255707763, Blast_Score=211, Evalue=3e-56,
Organism=Escherichia coli, GI1787191, Length=118, Percent_Identity=37.2881355932203, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788957, Length=120, Percent_Identity=34.1666666666667, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22719; Mature: 22719

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKAILTLTGVFALAAMGTGCSTVNPYTNEQQTANATTGAIIGAVAGAAVGVASSSKSD
CCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
RGKGALIGAASGAAVGGGIGYYMDVQETKLRQQLQASGVSVTRNGDNIILNMPNDVTFAV
CCCEEEEECCCCCCCCCCEEEEECHHHHHHHHHHHHCCCEEEECCCEEEEECCCCEEEEE
DKTDLSPRAMQVLDSVALVAKEYSKTRLNVLGYTDSSGADSYNLRLSQVRASEVGNYLLS
ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHH
KGVAAARVSTQGMGEASPIASNATAEGRAQNRRVEIILTPIG
CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
>Mature Secondary Structure
MNKKAILTLTGVFALAAMGTGCSTVNPYTNEQQTANATTGAIIGAVAGAAVGVASSSKSD
CCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
RGKGALIGAASGAAVGGGIGYYMDVQETKLRQQLQASGVSVTRNGDNIILNMPNDVTFAV
CCCEEEEECCCCCCCCCCEEEEECHHHHHHHHHHHHCCCEEEECCCEEEEECCCCEEEEE
DKTDLSPRAMQVLDSVALVAKEYSKTRLNVLGYTDSSGADSYNLRLSQVRASEVGNYLLS
ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHH
KGVAAARVSTQGMGEASPIASNATAEGRAQNRRVEIILTPIG
CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]