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The map label for this gene is kdsD [H]

Identifier: 119776215

GI number: 119776215

Start: 3660047

End: 3661024

Strand: Direct

Name: kdsD [H]

Synonym: Sama_3083

Alternate gene names: 119776215

Gene position: 3660047-3661024 (Clockwise)

Preceding gene: 119776214

Following gene: 119776216

Centisome position: 85.0

GC content: 53.99

Gene sequence:

>978_bases
ATGGTAGACAGAAAACAACTGCGCCAATGGGGCAGCAAGGTTATCGATATCGAAAAAGCTGCACTGGACAACCTGTACCA
GTTTGTCGACAGTGATGCCTTTGCCGACGCCTGCGAGCTTATCCTGCGCTGCACTGGCAAGGTTATCGTGATGGGTATGG
GTAAATCCGGCCACATTGGCAACAAGATTTCCGCTACTCTGGCAAGCACAGGTACGCCGGCGTTTTTTGTTCATCCGGGG
GAAGCGAGCCACGGTGATTTGGGCGTGCTCAGTGACAACGACATAGTGCTGGCCATCTCCAACTCCGGTGAGTCCAGTGA
GATCCTCACCCTGATGCCAGTGATTAAACGCCGTGGTATTCCTATCATCTCCATGACTGGCAAGCCTGAGTCCACCATGG
CCAAGCATTCCCTTTTGCACCTGTGTATCAAGGTGCCGGAAGAAGCCTGTCCCCTGGGGCTTGCCCCGACCTCATCCACC
ACAGCAACCCTGGTGATGGGTGATGCCCTGGCGGTCGCGCTGCTGCAGGCCAAAGGCTTTACCAAGGACGACTTTGCCAT
GTCACATCCCGGTGGTGCCCTGGGCCGCAAGTTACTGCTGCACGTCAGTGATGTCATGCATAAAGGAGACGAGCTGCCAC
TGGTACAGGATGATATCTGCATTACCGATGCCCTCTATGAAATCTCCAAGAAAGGCTTGGGAATGACGGCTATTGTGAAC
GCTTCTGGTGCCCTGGAAGGCATCTTTACCGACGGTGACCTGCGCCGGGTGATTGATGCGCAAATTAACCTGCGTCAAAC
CAGTATTGCCGATGTGATGACCCGCAACTGCATTACCATTGGTGAGCACATACTGGCTGCCGAAGCACTTAAACTGATGG
ACGAAAAAAATATCAACGGCCTGATTGTGATTGACGCCGAGCGACGCCCAATCGGCGCGCTCAACATGCTGGATATGGTT
AAAGCAGGGGTGATCTGA

Upstream 100 bases:

>100_bases
GGTTTATTCCTTGTGGTATTTATCGGTTATCAGTTCGTGCTGTTCCAGGCACACTGACCCTGATCTGTCGGTTTAATCCG
GCACAGACAGAGAGACAGAT

Downstream 100 bases:

>100_bases
TGCGCGAAGGACTCTACGGCCCCATTGATGATGCCATCTGGAACAAGGCCAAAGATATCAAGCTGCTCATTTGCGACGTA
GATGGGGTCTTTTCCGACGG

Product: arabinose-5-phosphate isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MVDRKQLRQWGSKVIDIEKAALDNLYQFVDSDAFADACELILRCTGKVIVMGMGKSGHIGNKISATLASTGTPAFFVHPG
EASHGDLGVLSDNDIVLAISNSGESSEILTLMPVIKRRGIPIISMTGKPESTMAKHSLLHLCIKVPEEACPLGLAPTSST
TATLVMGDALAVALLQAKGFTKDDFAMSHPGGALGRKLLLHVSDVMHKGDELPLVQDDICITDALYEISKKGLGMTAIVN
ASGALEGIFTDGDLRRVIDAQINLRQTSIADVMTRNCITIGEHILAAEALKLMDEKNINGLIVIDAERRPIGALNMLDMV
KAGVI

Sequences:

>Translated_325_residues
MVDRKQLRQWGSKVIDIEKAALDNLYQFVDSDAFADACELILRCTGKVIVMGMGKSGHIGNKISATLASTGTPAFFVHPG
EASHGDLGVLSDNDIVLAISNSGESSEILTLMPVIKRRGIPIISMTGKPESTMAKHSLLHLCIKVPEEACPLGLAPTSST
TATLVMGDALAVALLQAKGFTKDDFAMSHPGGALGRKLLLHVSDVMHKGDELPLVQDDICITDALYEISKKGLGMTAIVN
ASGALEGIFTDGDLRRVIDAQINLRQTSIADVMTRNCITIGEHILAAEALKLMDEKNINGLIVIDAERRPIGALNMLDMV
KAGVI
>Mature_325_residues
MVDRKQLRQWGSKVIDIEKAALDNLYQFVDSDAFADACELILRCTGKVIVMGMGKSGHIGNKISATLASTGTPAFFVHPG
EASHGDLGVLSDNDIVLAISNSGESSEILTLMPVIKRRGIPIISMTGKPESTMAKHSLLHLCIKVPEEACPLGLAPTSST
TATLVMGDALAVALLQAKGFTKDDFAMSHPGGALGRKLLLHVSDVMHKGDELPLVQDDICITDALYEISKKGLGMTAIVN
ASGALEGIFTDGDLRRVIDAQINLRQTSIADVMTRNCITIGEHILAAEALKLMDEKNINGLIVIDAERRPIGALNMLDMV
KAGVI

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=319, Percent_Identity=59.2476489028213, Blast_Score=385, Evalue=1e-108,
Organism=Escherichia coli, GI87082151, Length=294, Percent_Identity=46.2585034013605, Blast_Score=260, Evalue=7e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 34607; Mature: 34607

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDRKQLRQWGSKVIDIEKAALDNLYQFVDSDAFADACELILRCTGKVIVMGMGKSGHIG
CCCHHHHHHHCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCCC
NKISATLASTGTPAFFVHPGEASHGDLGVLSDNDIVLAISNSGESSEILTLMPVIKRRGI
CCCEEEEECCCCCEEEEECCCCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHCCC
PIISMTGKPESTMAKHSLLHLCIKVPEEACPLGLAPTSSTTATLVMGDALAVALLQAKGF
CEEEECCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCC
TKDDFAMSHPGGALGRKLLLHVSDVMHKGDELPLVQDDICITDALYEISKKGLGMTAIVN
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHCCCCEEEEEE
ASGALEGIFTDGDLRRVIDAQINLRQTSIADVMTRNCITIGEHILAAEALKLMDEKNING
CCCCEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
LIVIDAERRPIGALNMLDMVKAGVI
EEEEECCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MVDRKQLRQWGSKVIDIEKAALDNLYQFVDSDAFADACELILRCTGKVIVMGMGKSGHIG
CCCHHHHHHHCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCCC
NKISATLASTGTPAFFVHPGEASHGDLGVLSDNDIVLAISNSGESSEILTLMPVIKRRGI
CCCEEEEECCCCCEEEEECCCCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHCCC
PIISMTGKPESTMAKHSLLHLCIKVPEEACPLGLAPTSSTTATLVMGDALAVALLQAKGF
CEEEECCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCC
TKDDFAMSHPGGALGRKLLLHVSDVMHKGDELPLVQDDICITDALYEISKKGLGMTAIVN
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHCCCCEEEEEE
ASGALEGIFTDGDLRRVIDAQINLRQTSIADVMTRNCITIGEHILAAEALKLMDEKNING
CCCCEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
LIVIDAERRPIGALNMLDMVKAGVI
EEEEECCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]