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The map label for this gene is yhcM [H]

Identifier: 119776204

GI number: 119776204

Start: 3650039

End: 3651148

Strand: Reverse

Name: yhcM [H]

Synonym: Sama_3072

Alternate gene names: 119776204

Gene position: 3651148-3650039 (Counterclockwise)

Preceding gene: 119776207

Following gene: 119776203

Centisome position: 84.79

GC content: 54.41

Gene sequence:

>1110_bases
GTGTCACAACTGACCCCCTGGCAGCATTATCAACAGGACTTGTTAAAAGAAGGCTTTTCCCACGATCCGGCCCAAGAGCA
GGCAGTAAAGGCGTTGCAAAAAGTGTACGAAGAGCTTATTGCCAGTGCACCGGCCGCCGGACTTTTTGGTCGCCTTGGCA
GTAAACTGGGATTCGGTAAAAAGCGCCATGTCAGGGGGCTCTATCTGTGGGGCGGCGTTGGCCGTGGTAAAACCTACCTG
ATGGACACCTTTTACGAAGCCTTGCCCTTTGACGCCAAGCTCAGGGCGCACTTCCACCGTTTTATGCATCAGGTGCATCT
GGATCTCGATCGCCTCAAGGGCACCCGCGATCCTTTAGTGGTGATTGCCAAAGAGATGGCTGCCAAGGTTCGGGTGATTT
GCTTTGATGAGTTTTTCGTCTCGGATATCACAGATGCCATGTTGCTTGGCACCCTGTTTGAAGCCCTGTTTGATGAAGGC
GTAGTACTGGTTGCCACTTCCAACATCATCCCAGATGACCTGTATCGAAACGGGCTACAGCGGGCGCGCTTTTTGCCGGC
CATAGCACTGATTAACCGCCACTGCGCCGTGCTGAATGTGGACTCCGGCATCGACTATCGCCTGCGTACGCTTGAGCAGG
CCGAGATTTACCATTTTCCCCTGGATGCCCAGTCCGAGACCAACCTGCTTAAATATTTTGACCAGCTGACCCCTGAGTCT
GAGGTGCAGACGGCTCCCATTGAAGTGGAAGGCCGTCAGCTGAGCATTCGTAAACAGGCCCAGGGAGTTCTCCTCGCAGA
CTTTCGAGCACTGTGCGATGGGCCGCGTAGCCAGCGTGACTATATGGAGCTTGCAAGGCTGTATCACACGGTATTGCTGT
CGGGCGTCGAGCAGATGGGTGCCCGGGAAACCGGAGATGACATAGCTCGCCGATTCCTGGCGTTGGTGGATGAGTTTTAC
GAACGCCACGTGAAACTCATCATTTCTGCCGAGGTTGCCCTGGAAGATATCTATAGTGAAGGCCTGCTCAGTTTCGAGTT
TCGTCGCTGCCGTTCCCGGTTAATTGAAATGCAGTCTCACGACTACCTGGCGCTGGAGCATCTGCCCTAG

Upstream 100 bases:

>100_bases
ATTCAGGCGACGTTTGTCGGGTACGTCGGCTATTACCTTGGTCGCCCCGGCATGTTAACATTCACCCAATTTCATATATG
TCCCCCAGAGAATAATTCAA

Downstream 100 bases:

>100_bases
AAAAGAAAAGCGAGCAAAGGGCACCGAAGGCGCGGCCGATCCCGCCGCTGTAAAGCGCCAAGCGCCGGATCCTCGCGATC
TTTTTTGATTTTGATTTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MSQLTPWQHYQQDLLKEGFSHDPAQEQAVKALQKVYEELIASAPAAGLFGRLGSKLGFGKKRHVRGLYLWGGVGRGKTYL
MDTFYEALPFDAKLRAHFHRFMHQVHLDLDRLKGTRDPLVVIAKEMAAKVRVICFDEFFVSDITDAMLLGTLFEALFDEG
VVLVATSNIIPDDLYRNGLQRARFLPAIALINRHCAVLNVDSGIDYRLRTLEQAEIYHFPLDAQSETNLLKYFDQLTPES
EVQTAPIEVEGRQLSIRKQAQGVLLADFRALCDGPRSQRDYMELARLYHTVLLSGVEQMGARETGDDIARRFLALVDEFY
ERHVKLIISAEVALEDIYSEGLLSFEFRRCRSRLIEMQSHDYLALEHLP

Sequences:

>Translated_369_residues
MSQLTPWQHYQQDLLKEGFSHDPAQEQAVKALQKVYEELIASAPAAGLFGRLGSKLGFGKKRHVRGLYLWGGVGRGKTYL
MDTFYEALPFDAKLRAHFHRFMHQVHLDLDRLKGTRDPLVVIAKEMAAKVRVICFDEFFVSDITDAMLLGTLFEALFDEG
VVLVATSNIIPDDLYRNGLQRARFLPAIALINRHCAVLNVDSGIDYRLRTLEQAEIYHFPLDAQSETNLLKYFDQLTPES
EVQTAPIEVEGRQLSIRKQAQGVLLADFRALCDGPRSQRDYMELARLYHTVLLSGVEQMGARETGDDIARRFLALVDEFY
ERHVKLIISAEVALEDIYSEGLLSFEFRRCRSRLIEMQSHDYLALEHLP
>Mature_368_residues
SQLTPWQHYQQDLLKEGFSHDPAQEQAVKALQKVYEELIASAPAAGLFGRLGSKLGFGKKRHVRGLYLWGGVGRGKTYLM
DTFYEALPFDAKLRAHFHRFMHQVHLDLDRLKGTRDPLVVIAKEMAAKVRVICFDEFFVSDITDAMLLGTLFEALFDEGV
VLVATSNIIPDDLYRNGLQRARFLPAIALINRHCAVLNVDSGIDYRLRTLEQAEIYHFPLDAQSETNLLKYFDQLTPESE
VQTAPIEVEGRQLSIRKQAQGVLLADFRALCDGPRSQRDYMELARLYHTVLLSGVEQMGARETGDDIARRFLALVDEFYE
RHVKLIISAEVALEDIYSEGLLSFEFRRCRSRLIEMQSHDYLALEHLP

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=407, Percent_Identity=36.6093366093366, Blast_Score=240, Evalue=1e-63,
Organism=Escherichia coli, GI1789627, Length=375, Percent_Identity=51.7333333333333, Blast_Score=361, Evalue=1e-101,
Organism=Caenorhabditis elegans, GI17505769, Length=307, Percent_Identity=36.4820846905537, Blast_Score=211, Evalue=6e-55,
Organism=Saccharomyces cerevisiae, GI6320783, Length=415, Percent_Identity=30.3614457831325, Blast_Score=161, Evalue=2e-40,
Organism=Drosophila melanogaster, GI20129913, Length=430, Percent_Identity=33.7209302325581, Blast_Score=189, Evalue=3e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42149; Mature: 42018

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQLTPWQHYQQDLLKEGFSHDPAQEQAVKALQKVYEELIASAPAAGLFGRLGSKLGFGK
CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
KRHVRGLYLWGGVGRGKTYLMDTFYEALPFDAKLRAHFHRFMHQVHLDLDRLKGTRDPLV
HHCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
VIAKEMAAKVRVICFDEFFVSDITDAMLLGTLFEALFDEGVVLVATSNIIPDDLYRNGLQ
HHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHH
RARFLPAIALINRHCAVLNVDSGIDYRLRTLEQAEIYHFPLDAQSETNLLKYFDQLTPES
HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHEEECCCCCCCCHHHHHHHHHCCCCC
EVQTAPIEVEGRQLSIRKQAQGVLLADFRALCDGPRSQRDYMELARLYHTVLLSGVEQMG
CCCCCCEEECCCEEEHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
ARETGDDIARRFLALVDEFYERHVKLIISAEVALEDIYSEGLLSFEFRRCRSRLIEMQSH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC
DYLALEHLP
CEEEECCCC
>Mature Secondary Structure 
SQLTPWQHYQQDLLKEGFSHDPAQEQAVKALQKVYEELIASAPAAGLFGRLGSKLGFGK
CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
KRHVRGLYLWGGVGRGKTYLMDTFYEALPFDAKLRAHFHRFMHQVHLDLDRLKGTRDPLV
HHCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
VIAKEMAAKVRVICFDEFFVSDITDAMLLGTLFEALFDEGVVLVATSNIIPDDLYRNGLQ
HHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHH
RARFLPAIALINRHCAVLNVDSGIDYRLRTLEQAEIYHFPLDAQSETNLLKYFDQLTPES
HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHEEECCCCCCCCHHHHHHHHHCCCCC
EVQTAPIEVEGRQLSIRKQAQGVLLADFRALCDGPRSQRDYMELARLYHTVLLSGVEQMG
CCCCCCEEECCCEEEHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
ARETGDDIARRFLALVDEFYERHVKLIISAEVALEDIYSEGLLSFEFRRCRSRLIEMQSH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC
DYLALEHLP
CEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]