| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776163
Identifier: 119776163
GI number: 119776163
Start: 3606713
End: 3607168
Strand: Reverse
Name: 119776163
Synonym: Sama_3031
Alternate gene names: NA
Gene position: 3607168-3606713 (Counterclockwise)
Preceding gene: 119776164
Following gene: 119776162
Centisome position: 83.77
GC content: 44.52
Gene sequence:
>456_bases ATGCGTATTCAACAATTGCGTGAGCTTCTGGAGTACCTGGCAACATGCCGGCTGGAAATGGCTCAACTTTACAAAAGGCT GCATGCCCAAGCTGACTCTTCCAGGGTGAAATTGATGCTTGAGTACTTTCAGCAGCAACAAAAGCATATTGCAAAAAAAC TGGAAGACTATGTGGACGATGCGCCATCAAGACTTCTGGATACTTGGTATAAAGACCTTATTTTTGAAGACTTTATTAAA CGTTGTCAAAGCACTATGTTGCCAGCCAATATGCAGGAAGACGATGTGCTGAGTCTGCACCTGGATTTGGAAAACCGTTT GATTGCATTGCTGGAAAAAACCGCTGAAACATCGCAAACCGAAGAAATTCGCAGTGCCTTGGCCGATTTGGTCAGGGTAG AAAAGATTCAGCAGCAAAGACTCGTCCACAGTACCATCCGGATGGATGATATCTAG
Upstream 100 bases:
>100_bases ATGATGCAATTCAAATAATCCACCGATAAATGCTTCCATAATGGCACCAGACAGAATTGAAATTGGCCTTAACAGGGTCA TTGATGATGGAGGCAGTCCT
Downstream 100 bases:
>100_bases TGATGATTCCATCTTAAAAGACCGGCCTCATAGGCCGGTTTTTTTATGGATAACGCCAGAAGGGTCAATCACTTTGCATG ATTTACGTCAAAGTTTTCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 151; Mature: 151
Protein sequence:
>151_residues MRIQQLRELLEYLATCRLEMAQLYKRLHAQADSSRVKLMLEYFQQQQKHIAKKLEDYVDDAPSRLLDTWYKDLIFEDFIK RCQSTMLPANMQEDDVLSLHLDLENRLIALLEKTAETSQTEEIRSALADLVRVEKIQQQRLVHSTIRMDDI
Sequences:
>Translated_151_residues MRIQQLRELLEYLATCRLEMAQLYKRLHAQADSSRVKLMLEYFQQQQKHIAKKLEDYVDDAPSRLLDTWYKDLIFEDFIK RCQSTMLPANMQEDDVLSLHLDLENRLIALLEKTAETSQTEEIRSALADLVRVEKIQQQRLVHSTIRMDDI >Mature_151_residues MRIQQLRELLEYLATCRLEMAQLYKRLHAQADSSRVKLMLEYFQQQQKHIAKKLEDYVDDAPSRLLDTWYKDLIFEDFIK RCQSTMLPANMQEDDVLSLHLDLENRLIALLEKTAETSQTEEIRSALADLVRVEKIQQQRLVHSTIRMDDI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17938; Mature: 17938
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIQQLRELLEYLATCRLEMAQLYKRLHAQADSSRVKLMLEYFQQQQKHIAKKLEDYVDD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH APSRLLDTWYKDLIFEDFIKRCQSTMLPANMQEDDVLSLHLDLENRLIALLEKTAETSQT HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH EEIRSALADLVRVEKIQQQRLVHSTIRMDDI HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRIQQLRELLEYLATCRLEMAQLYKRLHAQADSSRVKLMLEYFQQQQKHIAKKLEDYVDD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH APSRLLDTWYKDLIFEDFIKRCQSTMLPANMQEDDVLSLHLDLENRLIALLEKTAETSQT HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH EEIRSALADLVRVEKIQQQRLVHSTIRMDDI HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA