Click here to switch to the map view.

The map label for this gene is orn

Identifier: 119776164

GI number: 119776164

Start: 3608130

End: 3608675

Strand: Reverse

Name: orn

Synonym: Sama_3032

Alternate gene names: 119776164

Gene position: 3608675-3608130 (Counterclockwise)

Preceding gene: 119776170

Following gene: 119776163

Centisome position: 83.8

GC content: 50.0

Gene sequence:

>546_bases
ATGGCTGCAGACGCAAAAAATCTGATTTGGATTGATCTTGAGATGACAGGATTGGAGCCCGAAGTGGACCGGATCCTGGA
GATTGCCACCCTGGTAACCGATCAGGATCTGAACATCCTGGCCCAGGGGCCTGTGATAGCCATTCATCAGTCTGACGAGG
TGCTGGCGGCCATGGATGATTGGAATCAGCAGCACCACGGTGCCTCGGGTCTGATCGAACGTGTACGAAGCAGTCAATAC
ACCGAAGCCGACGCCATTGCCCAGACAATTGATTTCCTGTCGTTGCATGTCCCCAAGGGCGTTTCACCTATGTGTGGTAA
CAGCGTAGGGCAGGACAGACGTTTCCTGAACAAGTACATGCGCGAACTGGAAGATTTTTTCCACTACAGAAATATCGATG
TCAGCACTATCAAAGAGTTGGTAAAACGCTGGGATCCAGAAGTGATGAAAGGCTTCAAAAAGCAAGGTACCCACCAGGCG
CTGCTTGATATTCAGGAGTCCATCGCCGAACTGCAGTTCTATCGCGACAAAGTATTTAAAATTTGA

Upstream 100 bases:

>100_bases
TCGTCAATAATCTGATGTGGTTGGGGATAAAAAGCATTATGATACACGGTCTTTGACAAAAAAGCCTGAAAATACGGCAC
GGGAACCAAAAGGCAGGTAT

Downstream 100 bases:

>100_bases
GCAAACGATAGATAAATCTGTGGCGGGGGGTTGCAGGCCATGGAAATTTTCATATAATGCGGCCTCACCTTTGCAGTGGT
ACGCTGTGAAGGTGAATTCG

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MAADAKNLIWIDLEMTGLEPEVDRILEIATLVTDQDLNILAQGPVIAIHQSDEVLAAMDDWNQQHHGASGLIERVRSSQY
TEADAIAQTIDFLSLHVPKGVSPMCGNSVGQDRRFLNKYMRELEDFFHYRNIDVSTIKELVKRWDPEVMKGFKKQGTHQA
LLDIQESIAELQFYRDKVFKI

Sequences:

>Translated_181_residues
MAADAKNLIWIDLEMTGLEPEVDRILEIATLVTDQDLNILAQGPVIAIHQSDEVLAAMDDWNQQHHGASGLIERVRSSQY
TEADAIAQTIDFLSLHVPKGVSPMCGNSVGQDRRFLNKYMRELEDFFHYRNIDVSTIKELVKRWDPEVMKGFKKQGTHQA
LLDIQESIAELQFYRDKVFKI
>Mature_180_residues
AADAKNLIWIDLEMTGLEPEVDRILEIATLVTDQDLNILAQGPVIAIHQSDEVLAAMDDWNQQHHGASGLIERVRSSQYT
EADAIAQTIDFLSLHVPKGVSPMCGNSVGQDRRFLNKYMRELEDFFHYRNIDVSTIKELVKRWDPEVMKGFKKQGTHQAL
LDIQESIAELQFYRDKVFKI

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain

Homologues:

Organism=Homo sapiens, GI224496106, Length=176, Percent_Identity=50.5681818181818, Blast_Score=187, Evalue=5e-48,
Organism=Escherichia coli, GI87082382, Length=181, Percent_Identity=64.6408839779006, Blast_Score=253, Evalue=4e-69,
Organism=Caenorhabditis elegans, GI17557752, Length=174, Percent_Identity=52.2988505747126, Blast_Score=179, Evalue=6e-46,
Organism=Saccharomyces cerevisiae, GI6323088, Length=189, Percent_Identity=38.0952380952381, Blast_Score=122, Evalue=4e-29,
Organism=Drosophila melanogaster, GI21355135, Length=175, Percent_Identity=46.2857142857143, Blast_Score=173, Evalue=5e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ORN_SHEAM (A1SA28)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_928904.1
- ProteinModelPortal:   A1SA28
- SMR:   A1SA28
- STRING:   A1SA28
- GeneID:   4606022
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_3032
- NMPDR:   fig|326297.7.peg.2849
- eggNOG:   COG1949
- HOGENOM:   HBG448545
- OMA:   WNKGTHG
- PhylomeDB:   A1SA28
- ProtClustDB:   PRK05359
- GO:   GO:0005737
- HAMAP:   MF_00045
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337
- SMART:   SM00479

Pfam domain/function: PF00929 Exonuc_X-T; SSF53098 RNaseH_fold

EC number: 3.1.-.- [C]

Molecular weight: Translated: 20699; Mature: 20568

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: ACT_SITE 129-129

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAADAKNLIWIDLEMTGLEPEVDRILEIATLVTDQDLNILAQGPVIAIHQSDEVLAAMDD
CCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCCEEEEECCCCHHHHHHH
WNQQHHGASGLIERVRSSQYTEADAIAQTIDFLSLHVPKGVSPMCGNSVGQDRRFLNKYM
HCHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
RELEDFFHYRNIDVSTIKELVKRWDPEVMKGFKKQGTHQALLDIQESIAELQFYRDKVFK
HHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
I
C
>Mature Secondary Structure 
AADAKNLIWIDLEMTGLEPEVDRILEIATLVTDQDLNILAQGPVIAIHQSDEVLAAMDD
CCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCCEEEEECCCCHHHHHHH
WNQQHHGASGLIERVRSSQYTEADAIAQTIDFLSLHVPKGVSPMCGNSVGQDRRFLNKYM
HCHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
RELEDFFHYRNIDVSTIKELVKRWDPEVMKGFKKQGTHQALLDIQESIAELQFYRDKVFK
HHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
I
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA