| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776122
Identifier: 119776122
GI number: 119776122
Start: 3562175
End: 3564217
Strand: Direct
Name: 119776122
Synonym: Sama_2990
Alternate gene names: NA
Gene position: 3562175-3564217 (Clockwise)
Preceding gene: 119776121
Following gene: 119776123
Centisome position: 82.72
GC content: 55.75
Gene sequence:
>2043_bases ATGAGAAAATTCACCTCCAGAAAGCTGGCATATCTGGTAGCCCTGGTGCTGACCGGGGCTTTGGCAGGTTGCGGTGATGA TGGTAAAGATGGCGCAGACGGTGCACCCGGTGCCCCAGGTACACCCGGCACCCCAGGTACTCCGGGCGAGCCTTGGTCAC CACCACCTGTTACCACGTCCACAGTGACCAATCTGAAAGTGATCAACTATAGCTTCGAAGAGGGAGCTATCAGCTACGAA TTTGAGATCACCGATGAAAACAACAACCCAATCAATGGCCTGGTGAACGCACAGGCTAAAGTGGCGGCCCTGACTTCCAA AGGTTTTATCAATAACCGCGATGAAGCCGATATCAACGGCATCGCCGACAATGTTGCTATTGGCGGCGCGGCGACTCAGG CCACCGAAGGCGCGGTCCTGACTGTGATTGACGATGGTCATTACAAGTTCAGCGCCCCCATGAAAGGCGTTAATGCCGGT ACCGAAGGCATCGTCTGGCTGCGTGTTGGCGGTAACGATGGTATTGCCACCTCAGCACCTCTGGTGGTGAACAAGCCCGA AGGCACTCACTCCACCACGACAGAAGCCTGCTTCTCCTGCCACGTGGATTACTCCACCAGCCCACGCCGTCACTCAAGCT ACGTGGCACAGGGCATGGACGGCGAAGTTGATTTCGTTGAAGGCTGTCAGGTATGTCACGGCCAGGTGAGCCGCAATGTG GTGAACGAAGAAGGCTTCTCCGTTGGCGGTTATGCCAGAAATACTCTCTCCAAGATTGGTCACATCAATCACCAGGAGTT TGAAACCGGCTTTAGCGTGATGAACTGTAGCTCTTGCCACAGCGAGCCAACTATCAATGTCGGCCTCACCGGCCCTGGCT GTATCGACTGTCACGACACAGGCGGCATCCCAGGTGATATTATCCCCGGCAACGGTGCAGATCTGCGCAAGCTGCACGAA GGCAAGACTGCCATCACGTCCAACAAAGCGATTAACGACAGCTACAAGGTCACAGGTACTGCACCAGCCTGGTTCCCTGA TTCAGGTCTGGCAGGTCAATGGTGTACTACTCTGTCGCTGTATAAGGTAGATGCTCAGACCGGCGCTGAAACCCTGGTTG ACCTCCATGAGCTGTTTGATGATACCCAAACAACTCATAATCCTGACAAGCCAATCAACTACGTGGGTTCCTACCTGCAC GGCGTGTATAACGACAGCGTCGTTGGCCGTATCACCGAAGCCTATGATTACAGCTACGACGCCGAAGGTCGCAAGACCAT GTGTTATGCGCAATCTGCCGGTCACGGTGTGCCACATGTTGTCGGCACAACACCTGATCTGTCAGCTTGGACCGGTGCAG GCCTGATGGCATCACTGCGTGTCAGCTTCACCGCCAAAGACTTCACAGGCGCCGAATCTGATGTAGTGACTATCCATGGT TACACCGATGTGGCCGCTCAAGCCGATGGCGCTGTGACAGCTTACGAGCGTCGTCATAACGTCGACAGCGAGTCTTGCAC CACCTGTCACAACAGCGAAGCCAACTTCCACAAGAATGGTAACTTCGCCGAAGGTGGCCTGGGCTGTGTGGCCTGTCACA ACAACGGTCAGGACCGTCGTGCCGGTGGATCAGGCCCAGGCTTCGGCCCCATGGTTCACAGCAAGCACTGGGGTGTGGGC AGCAAGAGCGTAGATGCGGACGGAAACGAAGTATCCAACGCCGCCAGCGCCATTGCACCTGAAACCAGCTGTGTGGCCTG TCACGCCGATGGCGCCATGGACCTGAACGCGATCCCCAACCAGTTCATCAAGGCCCGCGCCTATGGTGTCAGCAACAAGA TGGCCAGCCCAGTAACGGCCAACTGCTATGCCTGTCACACCAAGGAATCGGCCCTGAGCCACATGAAGTCCATGGGCGGT ACCATCTCTGATGACGTACCTGCAACCGGTTGGTACACCCTGTCTACCCAGGAATCCTGTGCCGTTTGCCACAACCCTGG CAATAGCGCAGGCATTGAAAAGTATCACAAGTTTACTCGCTGA
Upstream 100 bases:
>100_bases CGTTTGTACGATGTGATCCACGGCGTCAGGTTCAGAGTCTTACCACTCTGCCTGGAGCGGGCGCCAAACATCACAACCTC TGGGGCAAAAGGAGATTATG
Downstream 100 bases:
>100_bases TACCGGGAGCTGAGCCAGAGCGATACCAAGGTAATACCTCAGTCGCTCTGGTCAGGCAGGTAAAAACGGTAATACAAAGC GCCTCCTGAATGGAGGCGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 680; Mature: 680
Protein sequence:
>680_residues MRKFTSRKLAYLVALVLTGALAGCGDDGKDGADGAPGAPGTPGTPGTPGEPWSPPPVTTSTVTNLKVINYSFEEGAISYE FEITDENNNPINGLVNAQAKVAALTSKGFINNRDEADINGIADNVAIGGAATQATEGAVLTVIDDGHYKFSAPMKGVNAG TEGIVWLRVGGNDGIATSAPLVVNKPEGTHSTTTEACFSCHVDYSTSPRRHSSYVAQGMDGEVDFVEGCQVCHGQVSRNV VNEEGFSVGGYARNTLSKIGHINHQEFETGFSVMNCSSCHSEPTINVGLTGPGCIDCHDTGGIPGDIIPGNGADLRKLHE GKTAITSNKAINDSYKVTGTAPAWFPDSGLAGQWCTTLSLYKVDAQTGAETLVDLHELFDDTQTTHNPDKPINYVGSYLH GVYNDSVVGRITEAYDYSYDAEGRKTMCYAQSAGHGVPHVVGTTPDLSAWTGAGLMASLRVSFTAKDFTGAESDVVTIHG YTDVAAQADGAVTAYERRHNVDSESCTTCHNSEANFHKNGNFAEGGLGCVACHNNGQDRRAGGSGPGFGPMVHSKHWGVG SKSVDADGNEVSNAASAIAPETSCVACHADGAMDLNAIPNQFIKARAYGVSNKMASPVTANCYACHTKESALSHMKSMGG TISDDVPATGWYTLSTQESCAVCHNPGNSAGIEKYHKFTR
Sequences:
>Translated_680_residues MRKFTSRKLAYLVALVLTGALAGCGDDGKDGADGAPGAPGTPGTPGTPGEPWSPPPVTTSTVTNLKVINYSFEEGAISYE FEITDENNNPINGLVNAQAKVAALTSKGFINNRDEADINGIADNVAIGGAATQATEGAVLTVIDDGHYKFSAPMKGVNAG TEGIVWLRVGGNDGIATSAPLVVNKPEGTHSTTTEACFSCHVDYSTSPRRHSSYVAQGMDGEVDFVEGCQVCHGQVSRNV VNEEGFSVGGYARNTLSKIGHINHQEFETGFSVMNCSSCHSEPTINVGLTGPGCIDCHDTGGIPGDIIPGNGADLRKLHE GKTAITSNKAINDSYKVTGTAPAWFPDSGLAGQWCTTLSLYKVDAQTGAETLVDLHELFDDTQTTHNPDKPINYVGSYLH GVYNDSVVGRITEAYDYSYDAEGRKTMCYAQSAGHGVPHVVGTTPDLSAWTGAGLMASLRVSFTAKDFTGAESDVVTIHG YTDVAAQADGAVTAYERRHNVDSESCTTCHNSEANFHKNGNFAEGGLGCVACHNNGQDRRAGGSGPGFGPMVHSKHWGVG SKSVDADGNEVSNAASAIAPETSCVACHADGAMDLNAIPNQFIKARAYGVSNKMASPVTANCYACHTKESALSHMKSMGG TISDDVPATGWYTLSTQESCAVCHNPGNSAGIEKYHKFTR >Mature_680_residues MRKFTSRKLAYLVALVLTGALAGCGDDGKDGADGAPGAPGTPGTPGTPGEPWSPPPVTTSTVTNLKVINYSFEEGAISYE FEITDENNNPINGLVNAQAKVAALTSKGFINNRDEADINGIADNVAIGGAATQATEGAVLTVIDDGHYKFSAPMKGVNAG TEGIVWLRVGGNDGIATSAPLVVNKPEGTHSTTTEACFSCHVDYSTSPRRHSSYVAQGMDGEVDFVEGCQVCHGQVSRNV VNEEGFSVGGYARNTLSKIGHINHQEFETGFSVMNCSSCHSEPTINVGLTGPGCIDCHDTGGIPGDIIPGNGADLRKLHE GKTAITSNKAINDSYKVTGTAPAWFPDSGLAGQWCTTLSLYKVDAQTGAETLVDLHELFDDTQTTHNPDKPINYVGSYLH GVYNDSVVGRITEAYDYSYDAEGRKTMCYAQSAGHGVPHVVGTTPDLSAWTGAGLMASLRVSFTAKDFTGAESDVVTIHG YTDVAAQADGAVTAYERRHNVDSESCTTCHNSEANFHKNGNFAEGGLGCVACHNNGQDRRAGGSGPGFGPMVHSKHWGVG SKSVDADGNEVSNAASAIAPETSCVACHADGAMDLNAIPNQFIKARAYGVSNKMASPVTANCYACHTKESALSHMKSMGG TISDDVPATGWYTLSTQESCAVCHNPGNSAGIEKYHKFTR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 71190; Mature: 71190
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51008 MULTIHEME_CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKFTSRKLAYLVALVLTGALAGCGDDGKDGADGAPGAPGTPGTPGTPGEPWSPPPVTTS CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TVTNLKVINYSFEEGAISYEFEITDENNNPINGLVNAQAKVAALTSKGFINNRDEADING CCCEEEEEEEECCCCCEEEEEEEECCCCCCCCCEECCCEEEEEEECCCCCCCCCCCCCCC IADNVAIGGAATQATEGAVLTVIDDGHYKFSAPMKGVNAGTEGIVWLRVGGNDGIATSAP CCCCEEECCCCCCCCCCEEEEEEECCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCC LVVNKPEGTHSTTTEACFSCHVDYSTSPRRHSSYVAQGMDGEVDFVEGCQVCHGQVSRNV EEEECCCCCCCCCCHHHEEEEECCCCCCCHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHH VNEEGFSVGGYARNTLSKIGHINHQEFETGFSVMNCSSCHSEPTINVGLTGPGCIDCHDT HCCCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEECCCCCCCCCEEEECCCCCEEECCCC GGIPGDIIPGNGADLRKLHEGKTAITSNKAINDSYKVTGTAPAWFPDSGLAGQWCTTLSL CCCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEE YKVDAQTGAETLVDLHELFDDTQTTHNPDKPINYVGSYLHGVYNDSVVGRITEAYDYSYD EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCC AEGRKTMCYAQSAGHGVPHVVGTTPDLSAWTGAGLMASLRVSFTAKDFTGAESDVVTIHG CCCCEEEEEECCCCCCCCEEECCCCCCCHHCCCCEEEEEEEEEEECCCCCCCCCEEEEEC YTDVAAQADGAVTAYERRHNVDSESCTTCHNSEANFHKNGNFAEGGLGCVACHNNGQDRR CHHHHHCCCCCEEHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC AGGSGPGFGPMVHSKHWGVGSKSVDADGNEVSNAASAIAPETSCVACHADGAMDLNAIPN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCHHCCH QFIKARAYGVSNKMASPVTANCYACHTKESALSHMKSMGGTISDDVPATGWYTLSTQESC HHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCE AVCHNPGNSAGIEKYHKFTR EEEECCCCCCHHHHHHHHCC >Mature Secondary Structure MRKFTSRKLAYLVALVLTGALAGCGDDGKDGADGAPGAPGTPGTPGTPGEPWSPPPVTTS CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TVTNLKVINYSFEEGAISYEFEITDENNNPINGLVNAQAKVAALTSKGFINNRDEADING CCCEEEEEEEECCCCCEEEEEEEECCCCCCCCCEECCCEEEEEEECCCCCCCCCCCCCCC IADNVAIGGAATQATEGAVLTVIDDGHYKFSAPMKGVNAGTEGIVWLRVGGNDGIATSAP CCCCEEECCCCCCCCCCEEEEEEECCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCC LVVNKPEGTHSTTTEACFSCHVDYSTSPRRHSSYVAQGMDGEVDFVEGCQVCHGQVSRNV EEEECCCCCCCCCCHHHEEEEECCCCCCCHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHH VNEEGFSVGGYARNTLSKIGHINHQEFETGFSVMNCSSCHSEPTINVGLTGPGCIDCHDT HCCCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEECCCCCCCCCEEEECCCCCEEECCCC GGIPGDIIPGNGADLRKLHEGKTAITSNKAINDSYKVTGTAPAWFPDSGLAGQWCTTLSL CCCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEE YKVDAQTGAETLVDLHELFDDTQTTHNPDKPINYVGSYLHGVYNDSVVGRITEAYDYSYD EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCC AEGRKTMCYAQSAGHGVPHVVGTTPDLSAWTGAGLMASLRVSFTAKDFTGAESDVVTIHG CCCCEEEEEECCCCCCCCEEECCCCCCCHHCCCCEEEEEEEEEEECCCCCCCCCEEEEEC YTDVAAQADGAVTAYERRHNVDSESCTTCHNSEANFHKNGNFAEGGLGCVACHNNGQDRR CHHHHHCCCCCEEHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC AGGSGPGFGPMVHSKHWGVGSKSVDADGNEVSNAASAIAPETSCVACHADGAMDLNAIPN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCHHCCH QFIKARAYGVSNKMASPVTANCYACHTKESALSHMKSMGGTISDDVPATGWYTLSTQESC HHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCE AVCHNPGNSAGIEKYHKFTR EEEECCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA