The gene/protein map for NC_012581 is currently unavailable.
Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119776122

Identifier: 119776122

GI number: 119776122

Start: 3562175

End: 3564217

Strand: Direct

Name: 119776122

Synonym: Sama_2990

Alternate gene names: NA

Gene position: 3562175-3564217 (Clockwise)

Preceding gene: 119776121

Following gene: 119776123

Centisome position: 82.72

GC content: 55.75

Gene sequence:

>2043_bases
ATGAGAAAATTCACCTCCAGAAAGCTGGCATATCTGGTAGCCCTGGTGCTGACCGGGGCTTTGGCAGGTTGCGGTGATGA
TGGTAAAGATGGCGCAGACGGTGCACCCGGTGCCCCAGGTACACCCGGCACCCCAGGTACTCCGGGCGAGCCTTGGTCAC
CACCACCTGTTACCACGTCCACAGTGACCAATCTGAAAGTGATCAACTATAGCTTCGAAGAGGGAGCTATCAGCTACGAA
TTTGAGATCACCGATGAAAACAACAACCCAATCAATGGCCTGGTGAACGCACAGGCTAAAGTGGCGGCCCTGACTTCCAA
AGGTTTTATCAATAACCGCGATGAAGCCGATATCAACGGCATCGCCGACAATGTTGCTATTGGCGGCGCGGCGACTCAGG
CCACCGAAGGCGCGGTCCTGACTGTGATTGACGATGGTCATTACAAGTTCAGCGCCCCCATGAAAGGCGTTAATGCCGGT
ACCGAAGGCATCGTCTGGCTGCGTGTTGGCGGTAACGATGGTATTGCCACCTCAGCACCTCTGGTGGTGAACAAGCCCGA
AGGCACTCACTCCACCACGACAGAAGCCTGCTTCTCCTGCCACGTGGATTACTCCACCAGCCCACGCCGTCACTCAAGCT
ACGTGGCACAGGGCATGGACGGCGAAGTTGATTTCGTTGAAGGCTGTCAGGTATGTCACGGCCAGGTGAGCCGCAATGTG
GTGAACGAAGAAGGCTTCTCCGTTGGCGGTTATGCCAGAAATACTCTCTCCAAGATTGGTCACATCAATCACCAGGAGTT
TGAAACCGGCTTTAGCGTGATGAACTGTAGCTCTTGCCACAGCGAGCCAACTATCAATGTCGGCCTCACCGGCCCTGGCT
GTATCGACTGTCACGACACAGGCGGCATCCCAGGTGATATTATCCCCGGCAACGGTGCAGATCTGCGCAAGCTGCACGAA
GGCAAGACTGCCATCACGTCCAACAAAGCGATTAACGACAGCTACAAGGTCACAGGTACTGCACCAGCCTGGTTCCCTGA
TTCAGGTCTGGCAGGTCAATGGTGTACTACTCTGTCGCTGTATAAGGTAGATGCTCAGACCGGCGCTGAAACCCTGGTTG
ACCTCCATGAGCTGTTTGATGATACCCAAACAACTCATAATCCTGACAAGCCAATCAACTACGTGGGTTCCTACCTGCAC
GGCGTGTATAACGACAGCGTCGTTGGCCGTATCACCGAAGCCTATGATTACAGCTACGACGCCGAAGGTCGCAAGACCAT
GTGTTATGCGCAATCTGCCGGTCACGGTGTGCCACATGTTGTCGGCACAACACCTGATCTGTCAGCTTGGACCGGTGCAG
GCCTGATGGCATCACTGCGTGTCAGCTTCACCGCCAAAGACTTCACAGGCGCCGAATCTGATGTAGTGACTATCCATGGT
TACACCGATGTGGCCGCTCAAGCCGATGGCGCTGTGACAGCTTACGAGCGTCGTCATAACGTCGACAGCGAGTCTTGCAC
CACCTGTCACAACAGCGAAGCCAACTTCCACAAGAATGGTAACTTCGCCGAAGGTGGCCTGGGCTGTGTGGCCTGTCACA
ACAACGGTCAGGACCGTCGTGCCGGTGGATCAGGCCCAGGCTTCGGCCCCATGGTTCACAGCAAGCACTGGGGTGTGGGC
AGCAAGAGCGTAGATGCGGACGGAAACGAAGTATCCAACGCCGCCAGCGCCATTGCACCTGAAACCAGCTGTGTGGCCTG
TCACGCCGATGGCGCCATGGACCTGAACGCGATCCCCAACCAGTTCATCAAGGCCCGCGCCTATGGTGTCAGCAACAAGA
TGGCCAGCCCAGTAACGGCCAACTGCTATGCCTGTCACACCAAGGAATCGGCCCTGAGCCACATGAAGTCCATGGGCGGT
ACCATCTCTGATGACGTACCTGCAACCGGTTGGTACACCCTGTCTACCCAGGAATCCTGTGCCGTTTGCCACAACCCTGG
CAATAGCGCAGGCATTGAAAAGTATCACAAGTTTACTCGCTGA

Upstream 100 bases:

>100_bases
CGTTTGTACGATGTGATCCACGGCGTCAGGTTCAGAGTCTTACCACTCTGCCTGGAGCGGGCGCCAAACATCACAACCTC
TGGGGCAAAAGGAGATTATG

Downstream 100 bases:

>100_bases
TACCGGGAGCTGAGCCAGAGCGATACCAAGGTAATACCTCAGTCGCTCTGGTCAGGCAGGTAAAAACGGTAATACAAAGC
GCCTCCTGAATGGAGGCGTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 680; Mature: 680

Protein sequence:

>680_residues
MRKFTSRKLAYLVALVLTGALAGCGDDGKDGADGAPGAPGTPGTPGTPGEPWSPPPVTTSTVTNLKVINYSFEEGAISYE
FEITDENNNPINGLVNAQAKVAALTSKGFINNRDEADINGIADNVAIGGAATQATEGAVLTVIDDGHYKFSAPMKGVNAG
TEGIVWLRVGGNDGIATSAPLVVNKPEGTHSTTTEACFSCHVDYSTSPRRHSSYVAQGMDGEVDFVEGCQVCHGQVSRNV
VNEEGFSVGGYARNTLSKIGHINHQEFETGFSVMNCSSCHSEPTINVGLTGPGCIDCHDTGGIPGDIIPGNGADLRKLHE
GKTAITSNKAINDSYKVTGTAPAWFPDSGLAGQWCTTLSLYKVDAQTGAETLVDLHELFDDTQTTHNPDKPINYVGSYLH
GVYNDSVVGRITEAYDYSYDAEGRKTMCYAQSAGHGVPHVVGTTPDLSAWTGAGLMASLRVSFTAKDFTGAESDVVTIHG
YTDVAAQADGAVTAYERRHNVDSESCTTCHNSEANFHKNGNFAEGGLGCVACHNNGQDRRAGGSGPGFGPMVHSKHWGVG
SKSVDADGNEVSNAASAIAPETSCVACHADGAMDLNAIPNQFIKARAYGVSNKMASPVTANCYACHTKESALSHMKSMGG
TISDDVPATGWYTLSTQESCAVCHNPGNSAGIEKYHKFTR

Sequences:

>Translated_680_residues
MRKFTSRKLAYLVALVLTGALAGCGDDGKDGADGAPGAPGTPGTPGTPGEPWSPPPVTTSTVTNLKVINYSFEEGAISYE
FEITDENNNPINGLVNAQAKVAALTSKGFINNRDEADINGIADNVAIGGAATQATEGAVLTVIDDGHYKFSAPMKGVNAG
TEGIVWLRVGGNDGIATSAPLVVNKPEGTHSTTTEACFSCHVDYSTSPRRHSSYVAQGMDGEVDFVEGCQVCHGQVSRNV
VNEEGFSVGGYARNTLSKIGHINHQEFETGFSVMNCSSCHSEPTINVGLTGPGCIDCHDTGGIPGDIIPGNGADLRKLHE
GKTAITSNKAINDSYKVTGTAPAWFPDSGLAGQWCTTLSLYKVDAQTGAETLVDLHELFDDTQTTHNPDKPINYVGSYLH
GVYNDSVVGRITEAYDYSYDAEGRKTMCYAQSAGHGVPHVVGTTPDLSAWTGAGLMASLRVSFTAKDFTGAESDVVTIHG
YTDVAAQADGAVTAYERRHNVDSESCTTCHNSEANFHKNGNFAEGGLGCVACHNNGQDRRAGGSGPGFGPMVHSKHWGVG
SKSVDADGNEVSNAASAIAPETSCVACHADGAMDLNAIPNQFIKARAYGVSNKMASPVTANCYACHTKESALSHMKSMGG
TISDDVPATGWYTLSTQESCAVCHNPGNSAGIEKYHKFTR
>Mature_680_residues
MRKFTSRKLAYLVALVLTGALAGCGDDGKDGADGAPGAPGTPGTPGTPGEPWSPPPVTTSTVTNLKVINYSFEEGAISYE
FEITDENNNPINGLVNAQAKVAALTSKGFINNRDEADINGIADNVAIGGAATQATEGAVLTVIDDGHYKFSAPMKGVNAG
TEGIVWLRVGGNDGIATSAPLVVNKPEGTHSTTTEACFSCHVDYSTSPRRHSSYVAQGMDGEVDFVEGCQVCHGQVSRNV
VNEEGFSVGGYARNTLSKIGHINHQEFETGFSVMNCSSCHSEPTINVGLTGPGCIDCHDTGGIPGDIIPGNGADLRKLHE
GKTAITSNKAINDSYKVTGTAPAWFPDSGLAGQWCTTLSLYKVDAQTGAETLVDLHELFDDTQTTHNPDKPINYVGSYLH
GVYNDSVVGRITEAYDYSYDAEGRKTMCYAQSAGHGVPHVVGTTPDLSAWTGAGLMASLRVSFTAKDFTGAESDVVTIHG
YTDVAAQADGAVTAYERRHNVDSESCTTCHNSEANFHKNGNFAEGGLGCVACHNNGQDRRAGGSGPGFGPMVHSKHWGVG
SKSVDADGNEVSNAASAIAPETSCVACHADGAMDLNAIPNQFIKARAYGVSNKMASPVTANCYACHTKESALSHMKSMGG
TISDDVPATGWYTLSTQESCAVCHNPGNSAGIEKYHKFTR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 71190; Mature: 71190

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51008 MULTIHEME_CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKFTSRKLAYLVALVLTGALAGCGDDGKDGADGAPGAPGTPGTPGTPGEPWSPPPVTTS
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TVTNLKVINYSFEEGAISYEFEITDENNNPINGLVNAQAKVAALTSKGFINNRDEADING
CCCEEEEEEEECCCCCEEEEEEEECCCCCCCCCEECCCEEEEEEECCCCCCCCCCCCCCC
IADNVAIGGAATQATEGAVLTVIDDGHYKFSAPMKGVNAGTEGIVWLRVGGNDGIATSAP
CCCCEEECCCCCCCCCCEEEEEEECCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCC
LVVNKPEGTHSTTTEACFSCHVDYSTSPRRHSSYVAQGMDGEVDFVEGCQVCHGQVSRNV
EEEECCCCCCCCCCHHHEEEEECCCCCCCHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHH
VNEEGFSVGGYARNTLSKIGHINHQEFETGFSVMNCSSCHSEPTINVGLTGPGCIDCHDT
HCCCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEECCCCCCCCCEEEECCCCCEEECCCC
GGIPGDIIPGNGADLRKLHEGKTAITSNKAINDSYKVTGTAPAWFPDSGLAGQWCTTLSL
CCCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEE
YKVDAQTGAETLVDLHELFDDTQTTHNPDKPINYVGSYLHGVYNDSVVGRITEAYDYSYD
EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
AEGRKTMCYAQSAGHGVPHVVGTTPDLSAWTGAGLMASLRVSFTAKDFTGAESDVVTIHG
CCCCEEEEEECCCCCCCCEEECCCCCCCHHCCCCEEEEEEEEEEECCCCCCCCCEEEEEC
YTDVAAQADGAVTAYERRHNVDSESCTTCHNSEANFHKNGNFAEGGLGCVACHNNGQDRR
CHHHHHCCCCCEEHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC
AGGSGPGFGPMVHSKHWGVGSKSVDADGNEVSNAASAIAPETSCVACHADGAMDLNAIPN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCHHCCH
QFIKARAYGVSNKMASPVTANCYACHTKESALSHMKSMGGTISDDVPATGWYTLSTQESC
HHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCE
AVCHNPGNSAGIEKYHKFTR
EEEECCCCCCHHHHHHHHCC
>Mature Secondary Structure
MRKFTSRKLAYLVALVLTGALAGCGDDGKDGADGAPGAPGTPGTPGTPGEPWSPPPVTTS
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TVTNLKVINYSFEEGAISYEFEITDENNNPINGLVNAQAKVAALTSKGFINNRDEADING
CCCEEEEEEEECCCCCEEEEEEEECCCCCCCCCEECCCEEEEEEECCCCCCCCCCCCCCC
IADNVAIGGAATQATEGAVLTVIDDGHYKFSAPMKGVNAGTEGIVWLRVGGNDGIATSAP
CCCCEEECCCCCCCCCCEEEEEEECCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCC
LVVNKPEGTHSTTTEACFSCHVDYSTSPRRHSSYVAQGMDGEVDFVEGCQVCHGQVSRNV
EEEECCCCCCCCCCHHHEEEEECCCCCCCHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHH
VNEEGFSVGGYARNTLSKIGHINHQEFETGFSVMNCSSCHSEPTINVGLTGPGCIDCHDT
HCCCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEECCCCCCCCCEEEECCCCCEEECCCC
GGIPGDIIPGNGADLRKLHEGKTAITSNKAINDSYKVTGTAPAWFPDSGLAGQWCTTLSL
CCCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEE
YKVDAQTGAETLVDLHELFDDTQTTHNPDKPINYVGSYLHGVYNDSVVGRITEAYDYSYD
EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
AEGRKTMCYAQSAGHGVPHVVGTTPDLSAWTGAGLMASLRVSFTAKDFTGAESDVVTIHG
CCCCEEEEEECCCCCCCCEEECCCCCCCHHCCCCEEEEEEEEEEECCCCCCCCCEEEEEC
YTDVAAQADGAVTAYERRHNVDSESCTTCHNSEANFHKNGNFAEGGLGCVACHNNGQDRR
CHHHHHCCCCCEEHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC
AGGSGPGFGPMVHSKHWGVGSKSVDADGNEVSNAASAIAPETSCVACHADGAMDLNAIPN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCHHCCH
QFIKARAYGVSNKMASPVTANCYACHTKESALSHMKSMGGTISDDVPATGWYTLSTQESC
HHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCE
AVCHNPGNSAGIEKYHKFTR
EEEECCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA