| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776068
Identifier: 119776068
GI number: 119776068
Start: 3489296
End: 3489988
Strand: Direct
Name: 119776068
Synonym: Sama_2936
Alternate gene names: NA
Gene position: 3489296-3489988 (Clockwise)
Preceding gene: 119776067
Following gene: 119776069
Centisome position: 81.03
GC content: 54.4
Gene sequence:
>693_bases ATGACAATCAAAGACAGAAACGACTATGGACAATTTGATCCCCACCGGCTGGTGTTTCATATGTCCATTGGTGGGGTGAT GATTTGCGCCTTCGGTGCGGCTGTCTCCATTATGTCTGTACTGGGTACCCTTGGGTGGCAGGTAATTAATCTGCGAATCG ATCGTCTGGGAGACTACCTGAGCTCCCCTCTTGCCTACGTGTACAACATCTGTCTTTTATTCGCCGGTGCCAGTTTTGTG ATAGCCATGCTGGGCCTCTTCAGCATGCGCTATAACAATTTCAGCCGCTACATTGCCATCATTGGCGGCTGCACCGGGCT TGGCATCATGCTGCTTGGCATATATCCCTATAACGACGCCGATTCCCACCGACTGGCGGCGCTGGTTTTTGTCAACTCCA GCCTGGCCATGTTTGTACTGCTGATATTTACCCGCCGCAACAATCAGGAACTGTGCAGCCTTCCCATGTTCTTTGTGGCC CTGGTTGGGCTGGCCTCCAGCATAGGTTTGCTCGCTCAGATTGACCCGGATACCCTGGATTACCTGTCCTGCGGTTCGCT GGAACAATTCTGTCCGGTGGCCATGACCATGTGGATACACACCTCAGCCACCATGCTGGCCGGAGTCGGCCTGGCCCTGA TGGCCCGCTCCCTCATCCATCAGGCGCTGGAAGAGCGCCGTCTCAAACCTTGA
Upstream 100 bases:
>100_bases CTATGCATGGTACTGCATGATATTGGCGCTGGTAGCCGTTCTGATCGTGACATTCAGACAACGTCACTGAGGATCAGGAG ACTGCCACCCGGGAAAACCT
Downstream 100 bases:
>100_bases GTGACTGCGCCATATCCAAAGGCACTCGCCTGTGTAAATACCTTGCCGAGGCGGGCGTGGCCTCACGGCGCGGTGCATCA CGCCTGATAGAAACGGGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 230; Mature: 229
Protein sequence:
>230_residues MTIKDRNDYGQFDPHRLVFHMSIGGVMICAFGAAVSIMSVLGTLGWQVINLRIDRLGDYLSSPLAYVYNICLLFAGASFV IAMLGLFSMRYNNFSRYIAIIGGCTGLGIMLLGIYPYNDADSHRLAALVFVNSSLAMFVLLIFTRRNNQELCSLPMFFVA LVGLASSIGLLAQIDPDTLDYLSCGSLEQFCPVAMTMWIHTSATMLAGVGLALMARSLIHQALEERRLKP
Sequences:
>Translated_230_residues MTIKDRNDYGQFDPHRLVFHMSIGGVMICAFGAAVSIMSVLGTLGWQVINLRIDRLGDYLSSPLAYVYNICLLFAGASFV IAMLGLFSMRYNNFSRYIAIIGGCTGLGIMLLGIYPYNDADSHRLAALVFVNSSLAMFVLLIFTRRNNQELCSLPMFFVA LVGLASSIGLLAQIDPDTLDYLSCGSLEQFCPVAMTMWIHTSATMLAGVGLALMARSLIHQALEERRLKP >Mature_229_residues TIKDRNDYGQFDPHRLVFHMSIGGVMICAFGAAVSIMSVLGTLGWQVINLRIDRLGDYLSSPLAYVYNICLLFAGASFVI AMLGLFSMRYNNFSRYIAIIGGCTGLGIMLLGIYPYNDADSHRLAALVFVNSSLAMFVLLIFTRRNNQELCSLPMFFVAL VGLASSIGLLAQIDPDTLDYLSCGSLEQFCPVAMTMWIHTSATMLAGVGLALMARSLIHQALEERRLKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25281; Mature: 25150
Theoretical pI: Translated: 7.42; Mature: 7.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 5.7 %Met (Translated Protein) 8.3 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 7.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIKDRNDYGQFDPHRLVFHMSIGGVMICAFGAAVSIMSVLGTLGWQVINLRIDRLGDYL CCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SSPLAYVYNICLLFAGASFVIAMLGLFSMRYNNFSRYIAIIGGCTGLGIMLLGIYPYNDA HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHEEECCCCC DSHRLAALVFVNSSLAMFVLLIFTRRNNQELCSLPMFFVALVGLASSIGLLAQIDPDTLD CCCCEEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHH YLSCGSLEQFCPVAMTMWIHTSATMLAGVGLALMARSLIHQALEERRLKP HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TIKDRNDYGQFDPHRLVFHMSIGGVMICAFGAAVSIMSVLGTLGWQVINLRIDRLGDYL CCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SSPLAYVYNICLLFAGASFVIAMLGLFSMRYNNFSRYIAIIGGCTGLGIMLLGIYPYNDA HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHEEECCCCC DSHRLAALVFVNSSLAMFVLLIFTRRNNQELCSLPMFFVALVGLASSIGLLAQIDPDTLD CCCCEEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHH YLSCGSLEQFCPVAMTMWIHTSATMLAGVGLALMARSLIHQALEERRLKP HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA