Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776047

Identifier: 119776047

GI number: 119776047

Start: 3464523

End: 3465335

Strand: Direct

Name: 119776047

Synonym: Sama_2915

Alternate gene names: NA

Gene position: 3464523-3465335 (Clockwise)

Preceding gene: 119776046

Following gene: 119776048

Centisome position: 80.46

GC content: 54.12

Gene sequence:

>813_bases
ATGAAAAACAAAAGTAACCTAGTAACCAGCTTGTTCCTGGCAAGCCTGGGAGCAACAACACAGGTTTCTGCTGAAACCGT
CAATGTGGGCGTGAGCTTTGCGATACCGCCCTACGTGATTCAGCAGGAAAACAGCGGTCTGGAGCTGGATATACTGCGCC
AGGCGCTGGCCCGCCGGGGACACTATGCGGTGATCCATTACATGCCGCTGTCCCGCACCTTCCGCGAGCTCAAGGACGGT
AAGCTCGACGGCATCATCAACACCAAAGAGAATATGCTTGAGGGCGTGTTCTACAGCGATGAAGTCATCCGTTTCCATAA
CTGCGTTATCAGCCTTGCCTCCCGCAATCTGGACATCAACACCATTGGCGATTTGAAGGGCATGAGTGTGGTGGCCTTTC
AACAGGCGTCGCGGATTCTGGGAGAAGAGTTTGGCAGCACAGTCGCCAAATCGCCGTCTTACAGCGAAATTGCCGCCCAG
CGCCATCAAATTCATATGCTGTTCAAGGGCCGAACCGACGTGATAGTCATGGAAAAAAGTATCTTTGCCTACTATCGCAA
AAAAGAGCTGGAGGCCGGATTTACGGAGGCCGGGCTTGAGGTTCGTGAGGCCTGCATTTTCGAACCCACGGCCTACCGTT
TTGCCTTTCGCTCGGCCCGAATTCGGGATGACTTCAATCAGGGCCTGAGTTCAATACGGGAAGACGGCACCCTTGCCGCC
ATCTTGCAAAAATACAAGGCCATGATGACGGTGGAACCCGAAGAAGAGCCCTCCATAGACGAGATGCTGCAAGCCCAGCC
GGAGCACCCCTGA

Upstream 100 bases:

>100_bases
ACAGGGAGTGAACTAAACTCAATACTGACTCGACAACCCAAGACGGCCCGCCGACAGAGCGACTAAACAATAAAGCCGTC
TCCCTGAGAACTTAGTTAAA

Downstream 100 bases:

>100_bases
CATCAGGGCTTAAGCCGTCTCTTAGACTAAAATCCAGCACATTTCCCGGGGCACACATCTTGTGGCGCCCCGGGGGAATG
GCTATCTTGTCTGCCCCTGT

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: ABC-Type Amino Acid Transport/Signal Transduction Systems; Amino Acid ABC Transporter Periplasmic Protein; ABC Polar Amino Acid Transport System; Amino Acid Transporter; Signal Transduction Histidine Kinase-Like Protein

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MKNKSNLVTSLFLASLGATTQVSAETVNVGVSFAIPPYVIQQENSGLELDILRQALARRGHYAVIHYMPLSRTFRELKDG
KLDGIINTKENMLEGVFYSDEVIRFHNCVISLASRNLDINTIGDLKGMSVVAFQQASRILGEEFGSTVAKSPSYSEIAAQ
RHQIHMLFKGRTDVIVMEKSIFAYYRKKELEAGFTEAGLEVREACIFEPTAYRFAFRSARIRDDFNQGLSSIREDGTLAA
ILQKYKAMMTVEPEEEPSIDEMLQAQPEHP

Sequences:

>Translated_270_residues
MKNKSNLVTSLFLASLGATTQVSAETVNVGVSFAIPPYVIQQENSGLELDILRQALARRGHYAVIHYMPLSRTFRELKDG
KLDGIINTKENMLEGVFYSDEVIRFHNCVISLASRNLDINTIGDLKGMSVVAFQQASRILGEEFGSTVAKSPSYSEIAAQ
RHQIHMLFKGRTDVIVMEKSIFAYYRKKELEAGFTEAGLEVREACIFEPTAYRFAFRSARIRDDFNQGLSSIREDGTLAA
ILQKYKAMMTVEPEEEPSIDEMLQAQPEHP
>Mature_270_residues
MKNKSNLVTSLFLASLGATTQVSAETVNVGVSFAIPPYVIQQENSGLELDILRQALARRGHYAVIHYMPLSRTFRELKDG
KLDGIINTKENMLEGVFYSDEVIRFHNCVISLASRNLDINTIGDLKGMSVVAFQQASRILGEEFGSTVAKSPSYSEIAAQ
RHQIHMLFKGRTDVIVMEKSIFAYYRKKELEAGFTEAGLEVREACIFEPTAYRFAFRSARIRDDFNQGLSSIREDGTLAA
ILQKYKAMMTVEPEEEPSIDEMLQAQPEHP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30309; Mature: 30309

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKSNLVTSLFLASLGATTQVSAETVNVGVSFAIPPYVIQQENSGLELDILRQALARRG
CCCHHHHHHHHHHHHCCCCCEECCEEEEECEEECCCCEEEEECCCCCHHHHHHHHHHCCC
HYAVIHYMPLSRTFRELKDGKLDGIINTKENMLEGVFYSDEVIRFHNCVISLASRNLDIN
CEEEEEECCHHHHHHHHHCCCCCCEECCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCE
TIGDLKGMSVVAFQQASRILGEEFGSTVAKSPSYSEIAAQRHQIHMLFKGRTDVIVMEKS
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEEECCCCEEEEHHH
IFAYYRKKELEAGFTEAGLEVREACIFEPTAYRFAFRSARIRDDFNQGLSSIREDGTLAA
HHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ILQKYKAMMTVEPEEEPSIDEMLQAQPEHP
HHHHHHHHEEECCCCCCCHHHHHHCCCCCC
>Mature Secondary Structure
MKNKSNLVTSLFLASLGATTQVSAETVNVGVSFAIPPYVIQQENSGLELDILRQALARRG
CCCHHHHHHHHHHHHCCCCCEECCEEEEECEEECCCCEEEEECCCCCHHHHHHHHHHCCC
HYAVIHYMPLSRTFRELKDGKLDGIINTKENMLEGVFYSDEVIRFHNCVISLASRNLDIN
CEEEEEECCHHHHHHHHHCCCCCCEECCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCE
TIGDLKGMSVVAFQQASRILGEEFGSTVAKSPSYSEIAAQRHQIHMLFKGRTDVIVMEKS
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEEECCCCEEEEHHH
IFAYYRKKELEAGFTEAGLEVREACIFEPTAYRFAFRSARIRDDFNQGLSSIREDGTLAA
HHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ILQKYKAMMTVEPEEEPSIDEMLQAQPEHP
HHHHHHHHEEECCCCCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA