| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is pldA [H]
Identifier: 119776025
GI number: 119776025
Start: 3435649
End: 3436533
Strand: Direct
Name: pldA [H]
Synonym: Sama_2893
Alternate gene names: 119776025
Gene position: 3435649-3436533 (Clockwise)
Preceding gene: 119776019
Following gene: 119776026
Centisome position: 79.78
GC content: 49.04
Gene sequence:
>885_bases ATGAAAAACTTAATGAGATATTTACTACCCCTGTTGTTTATTTCCCATGCTGCCTTGGCAGAAGAACCCTCTCTGGTGGA TGAAAGGGTGAAAGATGAGCTTGCTACCTCAGAGCAACCCTTCGTGATCACCCCCCATAAGGTGAACTACATATTGCCGG TGACCTACAACAGTTCCCCCAATATGAAGCCCTTCGAAGAAGAAGCGGCGGAGCATCCCTTCACCCTGGACGAGATGGAA GCCAAATTCCAGATAAGCTTTAAGTTTCCACTCTGGTATAACGTCTTTGGTGACAACGGCCACCTGTTTTTTGCCTATAC CAACCAGTCTTACTGGCAGGTATACAACAAAGACATTTCCTCGCCCTTTCGTGAAACCAACCACGAACCTGAGCTCTTTA TGTTGTTCAATAACGACTGGGAAGTGTTTGGCCTGACCAACTCCTTCTGGGGCTTTGGCGCCGTACACCAGTCAAATGGC AAGGCAGGTGATTTCTCCCGCAGCTGGAACCGCGTCTACGGCACCATGGTGTTCGACCGGGGCCCCCTGGCCATTGGCGC CAAGGTATGGTGGCGAATTCCGGAGGATGAAAAAGAATATGAAGGCGATCCCCATGGCGATGACAACCCGGATATCGAAG ATTACATGGGCAATTTTGAACTGCAGGCTGTGTATGGTCTGGAGGAACATCGTTTTACCATGCTGCTCAGAAACAATCTC GACAGCCCTAACCGGGGTGCCTTTGAGTTCACCTGGAGCTATCCCATCATAGGCAACCTGCGACTCTATACCCAATACTT CAATGGTTATGGTGAGAGCCTGATAGACTATAACGCTCACACCCAAAGGGTTGGTATTGGCATATCAATCAACGACTTAC TTTAA
Upstream 100 bases:
>100_bases AGCGACTTCACGTTGAGCCATGGGGAATTCTGGTAAATGCGCGGCGGGGGCGTTAATCTGCCCTACAACAAGATAGGCGC TATATGTTCATGGAAAGACA
Downstream 100 bases:
>100_bases GAGAACGCTAACCCATGAAGGCCTCTTCGGCCGGACAGCCAACCGCCACGCCACCCACCTTTGATGCTGTGTTGGCGGTG CTGGTCATTATCATTACCGT
Product: phospholipase A(1)
Products: NA
Alternate protein names: Detergent-resistant phospholipase A; DR-phospholipase A; Outer membrane phospholipase A; OM PLA; OMPLA; Phosphatidylcholine 1-acylhydrolase [H]
Number of amino acids: Translated: 294; Mature: 294
Protein sequence:
>294_residues MKNLMRYLLPLLFISHAALAEEPSLVDERVKDELATSEQPFVITPHKVNYILPVTYNSSPNMKPFEEEAAEHPFTLDEME AKFQISFKFPLWYNVFGDNGHLFFAYTNQSYWQVYNKDISSPFRETNHEPELFMLFNNDWEVFGLTNSFWGFGAVHQSNG KAGDFSRSWNRVYGTMVFDRGPLAIGAKVWWRIPEDEKEYEGDPHGDDNPDIEDYMGNFELQAVYGLEEHRFTMLLRNNL DSPNRGAFEFTWSYPIIGNLRLYTQYFNGYGESLIDYNAHTQRVGIGISINDLL
Sequences:
>Translated_294_residues MKNLMRYLLPLLFISHAALAEEPSLVDERVKDELATSEQPFVITPHKVNYILPVTYNSSPNMKPFEEEAAEHPFTLDEME AKFQISFKFPLWYNVFGDNGHLFFAYTNQSYWQVYNKDISSPFRETNHEPELFMLFNNDWEVFGLTNSFWGFGAVHQSNG KAGDFSRSWNRVYGTMVFDRGPLAIGAKVWWRIPEDEKEYEGDPHGDDNPDIEDYMGNFELQAVYGLEEHRFTMLLRNNL DSPNRGAFEFTWSYPIIGNLRLYTQYFNGYGESLIDYNAHTQRVGIGISINDLL >Mature_294_residues MKNLMRYLLPLLFISHAALAEEPSLVDERVKDELATSEQPFVITPHKVNYILPVTYNSSPNMKPFEEEAAEHPFTLDEME AKFQISFKFPLWYNVFGDNGHLFFAYTNQSYWQVYNKDISSPFRETNHEPELFMLFNNDWEVFGLTNSFWGFGAVHQSNG KAGDFSRSWNRVYGTMVFDRGPLAIGAKVWWRIPEDEKEYEGDPHGDDNPDIEDYMGNFELQAVYGLEEHRFTMLLRNNL DSPNRGAFEFTWSYPIIGNLRLYTQYFNGYGESLIDYNAHTQRVGIGISINDLL
Specific function: Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities [H]
COG id: COG2829
COG function: function code M; Outer membrane phospholipase A
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein. Note=One of the very few enzymes located there (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phospholipase A1 family [H]
Homologues:
Organism=Escherichia coli, GI2367300, Length=302, Percent_Identity=35.4304635761589, Blast_Score=182, Evalue=2e-47,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003187 [H]
Pfam domain/function: PF02253 PLA1 [H]
EC number: =3.1.1.32; =3.1.1.4 [H]
Molecular weight: Translated: 34244; Mature: 34244
Theoretical pI: Translated: 4.48; Mature: 4.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNLMRYLLPLLFISHAALAEEPSLVDERVKDELATSEQPFVITPHKVNYILPVTYNSSP CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEECCCCEEEEEEEEECCCC NMKPFEEEAAEHPFTLDEMEAKFQISFKFPLWYNVFGDNGHLFFAYTNQSYWQVYNKDIS CCCCCHHHHHCCCCCHHCCCEEEEEEEECCEEEEEECCCCEEEEEECCCCEEHHHHHHHC SPFRETNHEPELFMLFNNDWEVFGLTNSFWGFGAVHQSNGKAGDFSRSWNRVYGTMVFDR CHHHHCCCCCCEEEEECCCEEEEECCCCCCCCCEEECCCCCCCCCCCCHHHEEEEEEECC GPLAIGAKVWWRIPEDEKEYEGDPHGDDNPDIEDYMGNFELQAVYGLEEHRFTMLLRNNL CCEEECCEEEEECCCCHHHCCCCCCCCCCCCHHHHCCCEEEEEEECCCHHHEEEEEECCC DSPNRGAFEFTWSYPIIGNLRLYTQYFNGYGESLIDYNAHTQRVGIGISINDLL CCCCCCEEEEEECCCEECCEEEEEEHHHCCCCHHEECCCCCEEEEEEEEHHCCC >Mature Secondary Structure MKNLMRYLLPLLFISHAALAEEPSLVDERVKDELATSEQPFVITPHKVNYILPVTYNSSP CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEECCCCEEEEEEEEECCCC NMKPFEEEAAEHPFTLDEMEAKFQISFKFPLWYNVFGDNGHLFFAYTNQSYWQVYNKDIS CCCCCHHHHHCCCCCHHCCCEEEEEEEECCEEEEEECCCCEEEEEECCCCEEHHHHHHHC SPFRETNHEPELFMLFNNDWEVFGLTNSFWGFGAVHQSNGKAGDFSRSWNRVYGTMVFDR CHHHHCCCCCCEEEEECCCEEEEECCCCCCCCCEEECCCCCCCCCCCCHHHEEEEEEECC GPLAIGAKVWWRIPEDEKEYEGDPHGDDNPDIEDYMGNFELQAVYGLEEHRFTMLLRNNL CCEEECCEEEEECCCCHHHCCCCCCCCCCCCHHHHCCCEEEEEEECCCHHHEEEEEECCC DSPNRGAFEFTWSYPIIGNLRLYTQYFNGYGESLIDYNAHTQRVGIGISINDLL CCCCCCEEEEEECCCEECCEEEEEEHHHCCCCHHEECCCCCEEEEEEEEHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]