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The map label for this gene is ydaM [H]

Identifier: 119776019

GI number: 119776019

Start: 3427315

End: 3428589

Strand: Direct

Name: ydaM [H]

Synonym: Sama_2887

Alternate gene names: 119776019

Gene position: 3427315-3428589 (Clockwise)

Preceding gene: 119776018

Following gene: 119776025

Centisome position: 79.59

GC content: 36.71

Gene sequence:

>1275_bases
ATGGTTAACTTAAATGGAGTGCTGAATATCAGCAATCTCTCTCGAGCTTTGTTAATTAGGATATTGTTTTTCAGCGGATT
CTTTACTCTACTGATTACGTCATTTCAGCTCTACTCTGACTATCAGCGTGGAGTATTAGATATCCAGCGTGAGGCAGAAC
TATCTATCAAACAAACAGAGGAGTCTCTGGCAGCTGCAGTTTTTGAGTTGTATGATGTTCGAGTTGAAAGCATATTGGAT
TCCATAAACAGCTTTAATGCTTTCGCTGAAGTAACGTTGATAGTTGACAGCAAACTCCCCGGCTACAATTCAATAAATTA
TGTAGTTACAAAAAAATGGAGCGAAGATGCCATAAAAAAAGAGTACAGCAAAGAATTAACATACAAAGCACTAAATATTA
AGATTGGGAAAATAAATTACAAGCTCAACTCATCTCCTTTGAAAGAAAAAATATTTAGTCAAGCATGGACAATTTTACTA
TCTCAGTTCATTAAGACTATTTTTGTTTCAGCATTCATCCTTCATATTTTTCAAAAGTTTGTCATAAAACATCTCGCTGA
GATTTCTACATGGTTAAACAATTTCAAACCTGACACCTCATATAACCCTAAAAATATCGATTTAGAGTCAGATAGTAGCA
ACGAGATGACAAAACTCAAATCTGCTATTCTTGAAATGGGGCAACAAGTATATAGACATACCATCGAACTCGAAAGCATG
GTTGCATTGAGAACGGCCGAACTGGAAAAACTCGCATATACTGATGGCCTGACAGGAATTGCGAATAGGTCAGCATTTTT
TAGCAGAGCCGAAGCAGAATTACGCAAATCTCATCGATTATCCTACGATGTGGGAATATTGATGTTAGATTTAGACCATT
TTAAATCTATTAATGATACCTTCGGCCACGAAGCCGGAGACAATGTATTAAAATTAGTTGCCGATACAATCAGTACTTGT
CTACGTGAGATAGACATGTTTGGAAGAGTTGGTGGTGAGGAGTTTGCGATTTTAGTTCCTGGTACAGATAAATTTGGCAT
GCAAGCCTTAGCAGAACGCCTGAAAAGCGCAGTATCGAATACCGATGTATCCTTTTTAGACGCCGAGAAAAAGATATCAG
TAAGCATTGGCTACACCAAAATTTATCCTAATGAATCATTAAAATCTGCACTAAAGAGAGCTGACGAGAATCTATATTCG
GCAAAAAGAAATGGCAGAAATTGCTATGTAACAGAGATAGATTTTTTACCCAAGGTAGTAAACCAAACAGATTGA

Upstream 100 bases:

>100_bases
TGGTAGAGCAGAACCACACTCACATCAAACTATACGACACAACCCAAATACATGCAGAGCAAGCAGTAGCTAAGGCGCTT
GAATAAAATAGGTGCGATAC

Downstream 100 bases:

>100_bases
TTAATTTAAGTTGGAGTGAGCAGAGGCCAAGTCCCCATCGAAGCCGCTTTGGATGTTGGGCTGAGGAAAACCAGCGAGCC
GAGATAGGGCGAGTGTCGCG

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MVNLNGVLNISNLSRALLIRILFFSGFFTLLITSFQLYSDYQRGVLDIQREAELSIKQTEESLAAAVFELYDVRVESILD
SINSFNAFAEVTLIVDSKLPGYNSINYVVTKKWSEDAIKKEYSKELTYKALNIKIGKINYKLNSSPLKEKIFSQAWTILL
SQFIKTIFVSAFILHIFQKFVIKHLAEISTWLNNFKPDTSYNPKNIDLESDSSNEMTKLKSAILEMGQQVYRHTIELESM
VALRTAELEKLAYTDGLTGIANRSAFFSRAEAELRKSHRLSYDVGILMLDLDHFKSINDTFGHEAGDNVLKLVADTISTC
LREIDMFGRVGGEEFAILVPGTDKFGMQALAERLKSAVSNTDVSFLDAEKKISVSIGYTKIYPNESLKSALKRADENLYS
AKRNGRNCYVTEIDFLPKVVNQTD

Sequences:

>Translated_424_residues
MVNLNGVLNISNLSRALLIRILFFSGFFTLLITSFQLYSDYQRGVLDIQREAELSIKQTEESLAAAVFELYDVRVESILD
SINSFNAFAEVTLIVDSKLPGYNSINYVVTKKWSEDAIKKEYSKELTYKALNIKIGKINYKLNSSPLKEKIFSQAWTILL
SQFIKTIFVSAFILHIFQKFVIKHLAEISTWLNNFKPDTSYNPKNIDLESDSSNEMTKLKSAILEMGQQVYRHTIELESM
VALRTAELEKLAYTDGLTGIANRSAFFSRAEAELRKSHRLSYDVGILMLDLDHFKSINDTFGHEAGDNVLKLVADTISTC
LREIDMFGRVGGEEFAILVPGTDKFGMQALAERLKSAVSNTDVSFLDAEKKISVSIGYTKIYPNESLKSALKRADENLYS
AKRNGRNCYVTEIDFLPKVVNQTD
>Mature_424_residues
MVNLNGVLNISNLSRALLIRILFFSGFFTLLITSFQLYSDYQRGVLDIQREAELSIKQTEESLAAAVFELYDVRVESILD
SINSFNAFAEVTLIVDSKLPGYNSINYVVTKKWSEDAIKKEYSKELTYKALNIKIGKINYKLNSSPLKEKIFSQAWTILL
SQFIKTIFVSAFILHIFQKFVIKHLAEISTWLNNFKPDTSYNPKNIDLESDSSNEMTKLKSAILEMGQQVYRHTIELESM
VALRTAELEKLAYTDGLTGIANRSAFFSRAEAELRKSHRLSYDVGILMLDLDHFKSINDTFGHEAGDNVLKLVADTISTC
LREIDMFGRVGGEEFAILVPGTDKFGMQALAERLKSAVSNTDVSFLDAEKKISVSIGYTKIYPNESLKSALKRADENLYS
AKRNGRNCYVTEIDFLPKVVNQTD

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=161, Percent_Identity=38.5093167701863, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI87082007, Length=170, Percent_Identity=40, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1787262, Length=173, Percent_Identity=36.9942196531792, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1786584, Length=162, Percent_Identity=32.7160493827161, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1787816, Length=153, Percent_Identity=32.0261437908497, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787541, Length=173, Percent_Identity=30.635838150289, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI145693134, Length=195, Percent_Identity=29.2307692307692, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788381, Length=164, Percent_Identity=31.0975609756098, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787802, Length=158, Percent_Identity=31.6455696202532, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI87081974, Length=152, Percent_Identity=34.2105263157895, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081977, Length=218, Percent_Identity=27.9816513761468, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788085, Length=166, Percent_Identity=31.3253012048193, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1788956, Length=172, Percent_Identity=31.3953488372093, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 47967; Mature: 47967

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNLNGVLNISNLSRALLIRILFFSGFFTLLITSFQLYSDYQRGVLDIQREAELSIKQTE
CCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESLAAAVFELYDVRVESILDSINSFNAFAEVTLIVDSKLPGYNSINYVVTKKWSEDAIKK
HHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEEEEECCCCCCCCCCEEEECCCCHHHHHH
EYSKELTYKALNIKIGKINYKLNSSPLKEKIFSQAWTILLSQFIKTIFVSAFILHIFQKF
HHHHHHHEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIKHLAEISTWLNNFKPDTSYNPKNIDLESDSSNEMTKLKSAILEMGQQVYRHTIELESM
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VALRTAELEKLAYTDGLTGIANRSAFFSRAEAELRKSHRLSYDVGILMLDLDHFKSINDT
HHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHCCCEECCEEEEEHHHHHCCHHH
FGHEAGDNVLKLVADTISTCLREIDMFGRVGGEEFAILVPGTDKFGMQALAERLKSAVSN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCC
TDVSFLDAEKKISVSIGYTKIYPNESLKSALKRADENLYSAKRNGRNCYVTEIDFLPKVV
CCCCEEECCCEEEEEECEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHH
NQTD
CCCC
>Mature Secondary Structure
MVNLNGVLNISNLSRALLIRILFFSGFFTLLITSFQLYSDYQRGVLDIQREAELSIKQTE
CCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESLAAAVFELYDVRVESILDSINSFNAFAEVTLIVDSKLPGYNSINYVVTKKWSEDAIKK
HHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEEEEECCCCCCCCCCEEEECCCCHHHHHH
EYSKELTYKALNIKIGKINYKLNSSPLKEKIFSQAWTILLSQFIKTIFVSAFILHIFQKF
HHHHHHHEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIKHLAEISTWLNNFKPDTSYNPKNIDLESDSSNEMTKLKSAILEMGQQVYRHTIELESM
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VALRTAELEKLAYTDGLTGIANRSAFFSRAEAELRKSHRLSYDVGILMLDLDHFKSINDT
HHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHCCCEECCEEEEEHHHHHCCHHH
FGHEAGDNVLKLVADTISTCLREIDMFGRVGGEEFAILVPGTDKFGMQALAERLKSAVSN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCC
TDVSFLDAEKKISVSIGYTKIYPNESLKSALKRADENLYSAKRNGRNCYVTEIDFLPKVV
CCCCEEECCCEEEEEECEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHH
NQTD
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]