Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776016

Identifier: 119776016

GI number: 119776016

Start: 3424840

End: 3425685

Strand: Direct

Name: 119776016

Synonym: Sama_2884

Alternate gene names: NA

Gene position: 3424840-3425685 (Clockwise)

Preceding gene: 119776015

Following gene: 119776017

Centisome position: 79.53

GC content: 58.16

Gene sequence:

>846_bases
ATGAGTAACACCGACAGCGAGCCGGAATTCAGCCTGACCTCAGCCAATAGCCAGAGCGACACCTCAGCCAGACGCAAGGC
CTTATTACTCGGGCGTATACTGGGGCTTGCCAGCGAAGAGGGCTATCGTCCATCCAATGTGTCGGTGGCAGAACGGGCGG
CGCACCGGGCCCGCAAAATGGCGGCTCAGCATCAGGCCAACGTAGAGTCTATTTACACCCTGGCGCTCAAGCACACGCCA
TCTGACATAGTCGGCGCCGACCCTGACCCCGACTGGCTGTATCAGTTTTTTCAGATGGCCGAGCAAATCCATAACCGCCG
TATGCAAGAGTTGTGGGCCCGCATATTGGCTAAAGAGCTGACCGAGCCGGGCAACTTCAGCTTAAGAACCCTGGAAACCT
TAAGACGCCTCACCTGGCGCGAGGCTCAGACACTGGAAAAGGCCCTCGCCGTGGCCGTGCGCGTGGGCAGCGACGACCGG
CTGAAAATTCTTTCCGGTTTCCGGGTCACCGGCGGTATAGGCCAGCTGTTTCGTAAATCCTCTTCTGTTACCCTGCCCTT
ATCCCAATTCGGCCTGCCCTACTCGGCTCTGGTCACCCTGATGGATTTGGGCATATTGCACAGCAGCGAATTTGAAACCG
GCGAGCTGGACCCCAAACGCAGCTTCTCGCTGATACTGCCCAAAACCGAGCTTAAGCTCACCCCCAAACACGGCCATCTG
CTGCTGTCTTACTACCGTTTTTCCACCGTGGGCGATGAGCTGGCCCATCTGGTACGCCCCCACACGGAGTCCAACTTCGG
CCCTGCCCTCAAGGGCATGCTCGCCAAGGACTTTGATGTGACCTGA

Upstream 100 bases:

>100_bases
CCAAGGCATCCCGCCCCCGGCAATGAAGTCTTGTTTCCAGCCAAGGCCCTGACACAACGACCTGACGCAGCGCAGTGACC
GAGTAAAAAGAGACCACGCC

Downstream 100 bases:

>100_bases
GTTGGCAGCTCAATCATCCCTCCCCCTGCGGCGGCTGTCCCATCCCAAGCGCCGCGGGTGGCCATCACCTGACATGCCAA
GACATTTAACCCGCCCACAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MSNTDSEPEFSLTSANSQSDTSARRKALLLGRILGLASEEGYRPSNVSVAERAAHRARKMAAQHQANVESIYTLALKHTP
SDIVGADPDPDWLYQFFQMAEQIHNRRMQELWARILAKELTEPGNFSLRTLETLRRLTWREAQTLEKALAVAVRVGSDDR
LKILSGFRVTGGIGQLFRKSSSVTLPLSQFGLPYSALVTLMDLGILHSSEFETGELDPKRSFSLILPKTELKLTPKHGHL
LLSYYRFSTVGDELAHLVRPHTESNFGPALKGMLAKDFDVT

Sequences:

>Translated_281_residues
MSNTDSEPEFSLTSANSQSDTSARRKALLLGRILGLASEEGYRPSNVSVAERAAHRARKMAAQHQANVESIYTLALKHTP
SDIVGADPDPDWLYQFFQMAEQIHNRRMQELWARILAKELTEPGNFSLRTLETLRRLTWREAQTLEKALAVAVRVGSDDR
LKILSGFRVTGGIGQLFRKSSSVTLPLSQFGLPYSALVTLMDLGILHSSEFETGELDPKRSFSLILPKTELKLTPKHGHL
LLSYYRFSTVGDELAHLVRPHTESNFGPALKGMLAKDFDVT
>Mature_280_residues
SNTDSEPEFSLTSANSQSDTSARRKALLLGRILGLASEEGYRPSNVSVAERAAHRARKMAAQHQANVESIYTLALKHTPS
DIVGADPDPDWLYQFFQMAEQIHNRRMQELWARILAKELTEPGNFSLRTLETLRRLTWREAQTLEKALAVAVRVGSDDRL
KILSGFRVTGGIGQLFRKSSSVTLPLSQFGLPYSALVTLMDLGILHSSEFETGELDPKRSFSLILPKTELKLTPKHGHLL
LSYYRFSTVGDELAHLVRPHTESNFGPALKGMLAKDFDVT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31363; Mature: 31232

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNTDSEPEFSLTSANSQSDTSARRKALLLGRILGLASEEGYRPSNVSVAERAAHRARKM
CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
AAQHQANVESIYTLALKHTPSDIVGADPDPDWLYQFFQMAEQIHNRRMQELWARILAKEL
HHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TEPGNFSLRTLETLRRLTWREAQTLEKALAVAVRVGSDDRLKILSGFRVTGGIGQLFRKS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHCCEECCCHHHHHHCC
SSVTLPLSQFGLPYSALVTLMDLGILHSSEFETGELDPKRSFSLILPKTELKLTPKHGHL
CCCEEEHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEECCCCCCE
LLSYYRFSTVGDELAHLVRPHTESNFGPALKGMLAKDFDVT
EEHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
SNTDSEPEFSLTSANSQSDTSARRKALLLGRILGLASEEGYRPSNVSVAERAAHRARKM
CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
AAQHQANVESIYTLALKHTPSDIVGADPDPDWLYQFFQMAEQIHNRRMQELWARILAKEL
HHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TEPGNFSLRTLETLRRLTWREAQTLEKALAVAVRVGSDDRLKILSGFRVTGGIGQLFRKS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHCCEECCCHHHHHHCC
SSVTLPLSQFGLPYSALVTLMDLGILHSSEFETGELDPKRSFSLILPKTELKLTPKHGHL
CCCEEEHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEECCCCCCE
LLSYYRFSTVGDELAHLVRPHTESNFGPALKGMLAKDFDVT
EEHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA