| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775983
Identifier: 119775983
GI number: 119775983
Start: 3390084
End: 3391622
Strand: Direct
Name: 119775983
Synonym: Sama_2851
Alternate gene names: NA
Gene position: 3390084-3391622 (Clockwise)
Preceding gene: 119775982
Following gene: 119775987
Centisome position: 78.73
GC content: 54.45
Gene sequence:
>1539_bases ATGAGTCAACCAACGAATCTTTCGGGCAACGACCTCAGCGAAGTCAAACAGCTCGGTATGTGGGCCTCCATCATGAGCCT GGGCTACATTTTCTGGCTGGTGGGCGGCATGGAGCTGGTGGAGCGCATTGCCTATTACGGCGTGAAGGCCAGTGCCGGCC TCTATGCCAAGGCGCCCGAATCCCAGGGTGGCCTGGGTATTTCCCTTTCTGACTACGGCATCATTATCTCGACCTGGGCG ATACTGCAAACCTTTATCCCGGTGTTTACCGGCGGTATCTCCGACCGGGTGGGCTACAAAGAAACCATCTTCGCCTCCAC CATCATTAAAATTGCCGGCTACCTGTGTATGGCCTTTTTCCCCAGCTTCTGGGGCTTTTTGGCAGGCGCCATGCTGCTGG CTGCCGGTACGGGTATCTTCAAGCCCGGTATTCAGGGCACCCTGGTACTGGCAACCCGCCGCGACAACAGTTCCATGGCC TGGGGGATTTTCTATCAGGTGGTGAATATCGGCGGCTTCCTCGGCCCCCTGGTTGCCGTGCATATGCGCCAACTCTCCTG GGACAATGTGTTTTACGCCTGCGCCGCGATTATCTCGCTTAACTTTCTGTTTTTGCTTACCTATAAAGAGCCCGGCAAAG AAGCACGTCTGGAGCGCCAGCGCAAAATCAAGGCGGGCGATCTGAAGCAGGACTTCCTGTGGAAAGACGCCTGGAATGAG CTGAAAAAGCCGGTGGTGATTTACTACATGCTGGTATTTGCCGGTTTCTGGTTTTTGTTCAACTCCCTCTTCGATGTGCT GCCCATTCACATTGCCGAATGGGTGGATACCAGCGTGATTGTTTCGACCCTGTTTGGCGAAGAAGGTACCCGCAACGGCA TTTTGCAGTTCTGGCTGGGACTGAATAACGAAGGCACCAAGGTGATGCCGGAAGGCATGCTGAACCTGAACGCGGGCCTG ATTATGACCAGCTGCTTTTTGGTGGCGGCCCTGACTGCCAAGTACCGCATCACCACTGCCATGCTGTGGGGCTGCCTCCT GTCTATCGGTGCCTTTGTGATGATTGGTGCCACCCACGCCGCCTGGTATATAGTGCTGGCGATTGCCATGTTCTCTTTGG GTGAAATGATGATAAGCCCCAAAAAGAACGAGTTTATGGGCAATATCGCCCCCGAAGGCAAAAAGGCCATGTACCTGGGC TTTGTAATGCTGCCACAGGGCATAGGCTGGGGTCTTGAGGGATATTTTGGTCCCAAGTTGTATGAGATGTATGCCTCAAA AGAGAAATTCGCCCGTCAGATGCTGGGAGAAGAAGGCATGAGCAGCGCCGATGTGGCCGCTATTCCCCAGGGTGAAGCCT TTACCCGACTGGTGGAATTTACCGGCCGCGGCAGCCGTGAGCTGACCGAAGTTCTCTATAACGCCCACAATATCGGTATG GCCTGGTACATCATTGCCGCCATTGGCACCCTCTCCGCGGTGGGTATTTTTATCTACGGCAAGTGGCTGTTTAAGATGCA GCAACAAAATCCGGCGTAA
Upstream 100 bases:
>100_bases CTGTAAAGTGGCCCTGCCGGTGGCAGACTCCCCCGGTGGCAGCGCTATTTGAACGTACAATAGCCGACGATAACAACAAT GACAGGATGAAAGACGGACT
Downstream 100 bases:
>100_bases ATCTGCCGTCAATAAAAGTTCAGTAATAAAAAAAGCTGCCATCGGCAGCTTTTTTTATTGGGATAAACCTTAGCCCGCGT ATTTCTTCAGCCACTTGGCA
Product: transporter
Products: NA
Alternate protein names: Facilitator Superfamily Permease
Number of amino acids: Translated: 512; Mature: 511
Protein sequence:
>512_residues MSQPTNLSGNDLSEVKQLGMWASIMSLGYIFWLVGGMELVERIAYYGVKASAGLYAKAPESQGGLGISLSDYGIIISTWA ILQTFIPVFTGGISDRVGYKETIFASTIIKIAGYLCMAFFPSFWGFLAGAMLLAAGTGIFKPGIQGTLVLATRRDNSSMA WGIFYQVVNIGGFLGPLVAVHMRQLSWDNVFYACAAIISLNFLFLLTYKEPGKEARLERQRKIKAGDLKQDFLWKDAWNE LKKPVVIYYMLVFAGFWFLFNSLFDVLPIHIAEWVDTSVIVSTLFGEEGTRNGILQFWLGLNNEGTKVMPEGMLNLNAGL IMTSCFLVAALTAKYRITTAMLWGCLLSIGAFVMIGATHAAWYIVLAIAMFSLGEMMISPKKNEFMGNIAPEGKKAMYLG FVMLPQGIGWGLEGYFGPKLYEMYASKEKFARQMLGEEGMSSADVAAIPQGEAFTRLVEFTGRGSRELTEVLYNAHNIGM AWYIIAAIGTLSAVGIFIYGKWLFKMQQQNPA
Sequences:
>Translated_512_residues MSQPTNLSGNDLSEVKQLGMWASIMSLGYIFWLVGGMELVERIAYYGVKASAGLYAKAPESQGGLGISLSDYGIIISTWA ILQTFIPVFTGGISDRVGYKETIFASTIIKIAGYLCMAFFPSFWGFLAGAMLLAAGTGIFKPGIQGTLVLATRRDNSSMA WGIFYQVVNIGGFLGPLVAVHMRQLSWDNVFYACAAIISLNFLFLLTYKEPGKEARLERQRKIKAGDLKQDFLWKDAWNE LKKPVVIYYMLVFAGFWFLFNSLFDVLPIHIAEWVDTSVIVSTLFGEEGTRNGILQFWLGLNNEGTKVMPEGMLNLNAGL IMTSCFLVAALTAKYRITTAMLWGCLLSIGAFVMIGATHAAWYIVLAIAMFSLGEMMISPKKNEFMGNIAPEGKKAMYLG FVMLPQGIGWGLEGYFGPKLYEMYASKEKFARQMLGEEGMSSADVAAIPQGEAFTRLVEFTGRGSRELTEVLYNAHNIGM AWYIIAAIGTLSAVGIFIYGKWLFKMQQQNPA >Mature_511_residues SQPTNLSGNDLSEVKQLGMWASIMSLGYIFWLVGGMELVERIAYYGVKASAGLYAKAPESQGGLGISLSDYGIIISTWAI LQTFIPVFTGGISDRVGYKETIFASTIIKIAGYLCMAFFPSFWGFLAGAMLLAAGTGIFKPGIQGTLVLATRRDNSSMAW GIFYQVVNIGGFLGPLVAVHMRQLSWDNVFYACAAIISLNFLFLLTYKEPGKEARLERQRKIKAGDLKQDFLWKDAWNEL KKPVVIYYMLVFAGFWFLFNSLFDVLPIHIAEWVDTSVIVSTLFGEEGTRNGILQFWLGLNNEGTKVMPEGMLNLNAGLI MTSCFLVAALTAKYRITTAMLWGCLLSIGAFVMIGATHAAWYIVLAIAMFSLGEMMISPKKNEFMGNIAPEGKKAMYLGF VMLPQGIGWGLEGYFGPKLYEMYASKEKFARQMLGEEGMSSADVAAIPQGEAFTRLVEFTGRGSRELTEVLYNAHNIGMA WYIIAAIGTLSAVGIFIYGKWLFKMQQQNPA
Specific function: Unknown
COG id: COG3104
COG function: function code E; Dipeptide/tripeptide permease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56546; Mature: 56415
Theoretical pI: Translated: 8.24; Mature: 8.24
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQPTNLSGNDLSEVKQLGMWASIMSLGYIFWLVGGMELVERIAYYGVKASAGLYAKAPE CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCC SQGGLGISLSDYGIIISTWAILQTFIPVFTGGISDRVGYKETIFASTIIKIAGYLCMAFF CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH PSFWGFLAGAMLLAAGTGIFKPGIQGTLVLATRRDNSSMAWGIFYQVVNIGGFLGPLVAV HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH HMRQLSWDNVFYACAAIISLNFLFLLTYKEPGKEARLERQRKIKAGDLKQDFLWKDAWNE HHHHCCHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH LKKPVVIYYMLVFAGFWFLFNSLFDVLPIHIAEWVDTSVIVSTLFGEEGTRNGILQFWLG HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEC LNNEGTKVMPEGMLNLNAGLIMTSCFLVAALTAKYRITTAMLWGCLLSIGAFVMIGATHA CCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH AWYIVLAIAMFSLGEMMISPKKNEFMGNIAPEGKKAMYLGFVMLPQGIGWGLEGYFGPKL HHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHH YEMYASKEKFARQMLGEEGMSSADVAAIPQGEAFTRLVEFTGRGSRELTEVLYNAHNIGM HHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCH AWYIIAAIGTLSAVGIFIYGKWLFKMQQQNPA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SQPTNLSGNDLSEVKQLGMWASIMSLGYIFWLVGGMELVERIAYYGVKASAGLYAKAPE CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCC SQGGLGISLSDYGIIISTWAILQTFIPVFTGGISDRVGYKETIFASTIIKIAGYLCMAFF CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH PSFWGFLAGAMLLAAGTGIFKPGIQGTLVLATRRDNSSMAWGIFYQVVNIGGFLGPLVAV HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH HMRQLSWDNVFYACAAIISLNFLFLLTYKEPGKEARLERQRKIKAGDLKQDFLWKDAWNE HHHHCCHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH LKKPVVIYYMLVFAGFWFLFNSLFDVLPIHIAEWVDTSVIVSTLFGEEGTRNGILQFWLG HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEC LNNEGTKVMPEGMLNLNAGLIMTSCFLVAALTAKYRITTAMLWGCLLSIGAFVMIGATHA CCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH AWYIVLAIAMFSLGEMMISPKKNEFMGNIAPEGKKAMYLGFVMLPQGIGWGLEGYFGPKL HHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHH YEMYASKEKFARQMLGEEGMSSADVAAIPQGEAFTRLVEFTGRGSRELTEVLYNAHNIGM HHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCH AWYIIAAIGTLSAVGIFIYGKWLFKMQQQNPA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA